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sample_name:"Lysozyme"

Filter By

Current Database

  • EMDB [37]

Current status

  • REL [37]

Sample type

  • Protein [36]
  • Complex [28]
  • Ligand [18]
  • Sample [8]
  • Cellular component [1]
  • Other [1]

Organism

  • Gallus gallus [18]
  • Homo sapiens [5]
  • Meiothermus taiwanensis [4]
  • Tetrahymena thermophila [4]
  • Escherichia coli [4]
  • Methanocaldococcus jannaschii [3]
  • Algoriphagus machipongonensis [2]
  • Lama glama [2]
  • Tetrahymena thermophila [1]

EM Method

  • Single-particle [22]
  • Electron Crystallography [10]
  • Helical reconstruction [5]

Resolution

  • < 2Å [4]
  • ≥ 2Å and < 3Å [12]
  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [6]
  • ≥ 8Å and < 12Å [2]
  • ≥ 12Å and < 16Å [2]

Model molecular weight

  • 0-50 kDa [10]
  • 50-100 kDa [2]
  • 100-250 kDa [2]
  • 250-500 kDa [7]
  • 500-1000 kDa [5]
  • 2-5 MDa [3]
  • 5-10 MDa [2]
  • > 10 MDa [1]

Release Date

  • 2025 [7]
  • 2024 [9]
  • 2023 [5]
  • 2022 [5]
  • 2020 [1]
  • 2019 [1]
  • 2016 [3]
  • 2015 [4]
  • 2011 [2]

Author by name

  • Gonen T [8]
  • Chang C [4]
  • Chang CI [4]
  • Gao Y [4]
  • Gong Q [4]
  • Hattne J [4]
  • Hsieh K [4]
  • Hsieh KY [4]
  • Li M [4]
  • Li S [4]
  • Liu H [4]
  • Martynowycz MW [4]
  • Nannenga BL [4]
  • Shi D [4]
  • Zhang K [4]
  • Zhang S [4]
  • Clabbers MTB [3]
  • Miller AP [3]
  • Reichow SL [3]
  • Agard DA [2]
  • Amunts A [2]
  • Arakawa A [2]
  • Baradaran R [2]
  • Canellas F [2]
  • Cao Y [2]
  • Carrique L [2]
  • Cereghetti G [2]
  • Clausen T [2]
  • Davis BG [2]
  • Duerr K [2]
  • Duerr KL [2]
  • Ehrmann M [2]
  • Eisenstein F [2]
  • Ericson C [2]
  • Ericson CF [2]
  • Fairhead M [2]
  • Feldmuller M [2]
  • Flygaard RK [2]
  • Frey L [2]
  • Gilbert RJC [2]
  • Greenwald J [2]
  • Gruhl T [2]
  • Haapanen O [2]
  • Han F [2]
  • Han FZ [2]
  • He Z [2]
  • Heo Y [2]
  • Hu Y [2]
  • Hu YQ [2]
  • Ishimoto N [2]
  • Jeon H [2]
  • Kadavath H [2]
  • Kawabata H [2]
  • King N [2]
  • Kock Flygaard R [2]
  • Lee I-G [2]
  • Lee YH [2]
  • Leslie AG [2]
  • Leslie AGW [2]
  • Li H [2]
  • Li Y [2]
  • Lien YW [2]
  • Lin Y [2]
  • Liu Y [2]
  • Malet H [2]
  • Mamalis D [2]
  • Marechal A [2]
  • Meier BH [2]
  • Mezzenga R [2]
  • Muhleip A [2]
  • Park JH [2]
  • Park SY [2]
  • Peter M [2]
  • Pilhofer M [2]
  • Pokharna A [2]
  • Rhyner D [2]
  • Riek R [2]
  • Rutaganira FUN [2]
  • Saibil HR [2]
  • Sauer DB [2]
  • Sawa J [2]
  • Sharma V [2]
  • Shirouzu M [2]
  • Thalassinos K [2]
  • Tian H [2]
  • Tobiasson V [2]
  • Verba KA [2]
  • Wang RYR [2]
  • Weber ME [2]
  • Wenchel L [2]
  • Wu M [2]
  • Wu MC [2]
  • Xu J [2]
  • Yan J [2]
  • Ye M [2]
  • Yi G [2]
  • Yokoyama S [2]
  • Yun Y [2]
  • Zhang P [2]
  • Zhou J [2]

Author by ORCID

  • Hattne J [4]
  • Reichow SL [3]
  • Nannenga BL [3]
  • Martynowycz MW [3]
  • Thalassinos K [2]
  • Rutaganira FUN [2]
  • Cereghetti G [2]
  • Tobiasson V [2]
  • Weber ME [2]
  • Pokharna A [2]
  • Frey L [2]
  • Eisenstein F [2]
  • Feldmuller M [2]
  • Zhou L [2]
  • Muhleip A [2]
  • Ehrmann M [2]
  • Haapanen O [2]
  • Peter M [2]
  • Liu Y [2]
  • Malet H [2]
  • Ericson CF [2]
  • Pilhofer M [2]
  • Kadavath H [2]
  • Hu Y [2]
  • Leslie AG [2]
  • Amunts A [2]
  • Mezzenga R [2]
  • Gruhl T [2]
  • Baradaran R [2]
  • Riek R [2]
  • Sharma V [2]
  • Clausen T [2]
  • Xu J [2]
  • Lien YW [2]
  • Yokoyama S [2]
  • Marechal A [2]
  • Agard DA [2]
  • Zhou J [2]
  • Wenchel L [2]
  • Wiese S [1]
  • Iadanza MG [1]
  • Bucker R [1]
  • Gevorkov Y [1]
  • Yan CY [1]
  • Schulz EC [1]
  • Hogan-lamarre P [1]
  • Schonland SO [1]
  • Xie T [1]
  • Zhou H [1]
  • De La Cruz Mj [1]
  • Gonen T [1]
  • Schmidt M [1]
  • Sawaya MR [1]
  • Dwayne Miller Rj [1]
  • Hegenbart U [1]
  • Shi YG [1]
  • Fandrich M [1]
  • Karimi-farsijani S [1]
  • Mehrabi P [1]
  • Sharma K [1]
  • Schwierz N [1]
  • Pfeiffer PB [1]

Journal

  • NAT COMMUN [9]
  • TO BE PUBLISHED [5]
  • FUNDAM RES [4]
  • NAT METHODS [4]
  • J STRUCT BIOL [2]
  • NAT CHEM BIOL [2]
  • NAT MICROBIOL [2]
  • NAT STRUCT MOL BIOL [2]
  • NATURE [2]
  • SCIENCE [2]
  • BIORXIV [1]
  • ELIFE [1]
  • J STRUCT BIOL X [1]
  • PNAS [1]

Software

  • CRYOSPARC [8]
  • RELION [6]
  • AIMLESS [4]
  • CHIMERA [3]
  • REFMAC [3]
  • CHIMERA, FLEX-EM [2]
  • FLEX-EM [2]
  • IMAGIC-5, SPIDER [2]
  • MODELLER, CHIMERA, FLEX-EM [1]
  • MOLREP [1]
  • POINTLESS [1]

Microscope

  • FEI TITAN KRIOS [19]
  • FEI TECNAI F20 [8]
  • TFS KRIOS [6]
  • FEI TECNAI F30 [2]
  • TFS GLACIOS [1]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [37]

Film or detector model

  • FEI FALCON IV 4K X 4K [9]
  • GATAN K3 6K X 4K [7]
  • TVIPS TEMCAM-F416 4K X 4K [4]
  • GATAN K2 QUANTUM 4K X 4K [3]
  • GATAN K3 BIOCONTINUUM 6K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • KODAK SO-163 FILM [2]
  • DIRECT ELECTRON DE-12 4K X 3K [1]
  • FEI CETA 4K X 4K [1]
  • GATAN ULTRASCAN 4000 4K X 4K [1]
  • OTHER [1]

External links

  • AlphaFold DB [33]
  • PDBe-Kb [33]
  • UniProt [33]
  • PDB [32]
  • Gene Ontology [27]
  • InterPro [26]
  • Pfam [26]
  • ChEBI [16]
  • ChEMBL [12]
  • DrugBank [12]
  • EMPIAR [5]
  • CATH [1]
Sort by: Download
Showing 1 - 10 of 37. Page 1 of 4
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Preview first 10
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EMD-61056
Download Map
3D View
Cryo-EM Structure of Lysozyme Type 1 Amyloid Fibrils
Release date: Aug. 6, 2025
Resolution: 2.29 Å
EM Method: Helical reconstruction
Fitted PDBs: 9j0l

Kawabata H, Li Y, Lin Y, Ishimoto N, Yun Y, Heo Y, Park JH, Lee YH, Park SY

To Be Published

EMD-61057
Download Map
3D View
Cryo-EM Structure of Lysozyme Type 2 Amyloid Fibrils
Release date: Aug. 6, 2025
Resolution: 3.21 Å
EM Method: Helical reconstruction
Fitted PDBs: 9j0m

Kawabata H, Li Y, Umezawa H, Lin Y, Ishimoto N, Yun Y, Heo Y, Park JH, Lee YH, Park SY

To Be Published

EMD-50432
Download Map
3D View
Cryo-EM structure of Lysozyme homo-dimer assembled by homo Di-Gluebody
Release date: June 11, 2025
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 9fgx
Q-score: 0.266

Yi G, Mamalis D, Ye M, Carrique L, Fairhead M, Li H, Duerr KL, Zhang P, Sauer DB, von Delft F, Davis BG, Gilbert RJC

Nat Chem Biol (2026) 22 pp. 69-76 [ Pubmed: 40817135 DOI: doi:10.1038/s41589-025-01972-7 ]

EMD-50433
Download Map
3D View
Cryo-EM structure of Lysozyme homo-dimer assembled by homo Di-Gluebody - Local refinement
Release date: June 11, 2025
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 9fgy
Q-score: 0.37

Yi G, Mamalis D, Ye M, Carrique L, Fairhead M, Li H, Duerr KL, Zhang P, Sauer DB, von Delft F, Davis BG, Gilbert RJC

Nat Chem Biol (2026) 22 pp. 69-76 [ Pubmed: 40817135 DOI: doi:10.1038/s41589-025-01972-7 ]

EMD-49836
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3D View
Raw data
EMPIAR-12643
mjHSP16.5 32mer lysozyme, 75C
Release date: April 16, 2025
Resolution: 4.37 Å
EM Method: Single-particle
Fitted PDBs: 9nvi
Q-score: 0.223

Miller AP, Reichow SL

Nat Commun (2025) 16 pp. 3635-3635 [ DOI: doi:10.1038/s41467-025-58964-3 Pubmed: 40240363 ]

EMD-49837
Download Map
3D View
Raw data
EMPIAR-12643
mjHSP16.5 34mer lysozyme, 75C
Release date: April 16, 2025
Resolution: 4.71 Å
EM Method: Single-particle
Fitted PDBs: 9nvj
Q-score: 0.243

Miller AP, Reichow SL

Nat Commun (2025) 16 pp. 3635-3635 [ DOI: doi:10.1038/s41467-025-58964-3 Pubmed: 40240363 ]

EMD-49838
Download Map
3D View
Raw data
EMPIAR-12643
mjHSP16.5 36mer lysozyme, 75C
Release date: April 16, 2025
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 9nvk
Q-score: 0.336

Miller AP, Reichow SL

Nat Commun (2025) 16 pp. 3635-3635 [ DOI: doi:10.1038/s41467-025-58964-3 Pubmed: 40240363 ]

EMD-18883
Download Map
3D View
Raw data
EMPIAR-11785
Cryo-EM structure of the D87G lysozyme amyloid fibril
Release date: Nov. 20, 2024
Resolution: 2.8 Å
EM Method: Helical reconstruction
Fitted PDBs: 8r4a
Q-score: 0.599

Karimi-Farsijani S, Sharma K, Ugrina M, Kuhn L, Pfeiffer PB, Haupt C, Wiese S, Hegenbart U, Schonland SO, Schwierz N, Schmidt M, Fandrich M

Nat Commun (2024) 15 pp. 9648-9648 [ DOI: doi:10.1038/s41467-024-54091-7 Pubmed: 39511224 ]

EMD-18663
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3D View
Cryo-EM structure of the heat-irreversible amyloid fibrils of human lysozyme
Release date: Sept. 18, 2024
Resolution: 2.8 Å
EM Method: Helical reconstruction
Fitted PDBs: 8qut
Q-score: 0.539

Frey L, Zhou J, Cereghetti G, Weber ME, Rhyner D, Pokharna A, Wenchel L, Kadavath H, Cao Y, Meier BH, Peter M, Greenwald J, Riek R, Mezzenga R

Nat Commun (2024) 15 pp. 8448-8448 [ DOI: doi:10.1038/s41467-024-52681-z Pubmed: 39349464 ]

EMD-18669
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3D View
Cryo-EM structure of the heat-irreversible amyloid fibrils of hen egg-white lysozyme
Release date: Sept. 18, 2024
Resolution: 3.26 Å
EM Method: Helical reconstruction
Fitted PDBs: 8qv8
Q-score: 0.518

Frey L, Zhou J, Cereghetti G, Weber ME, Rhyner D, Pokharna A, Wenchel L, Kadavath H, Cao Y, Meier BH, Peter M, Greenwald J, Riek R, Mezzenga R

Nat Commun (2024) 15 pp. 8448-8448 [ DOI: doi:10.1038/s41467-024-52681-z Pubmed: 39349464 ]

Sort by: Download
Showing 1 - 10 of 37. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [37]

Current status

  • REL [37]

Sample type

  • Protein [36]
  • Complex [28]
  • Ligand [18]
  • Sample [8]
  • Cellular component [1]
  • Other [1]

Organism

  • Gallus gallus [18]
  • Homo sapiens [5]
  • Meiothermus taiwanensis [4]
  • Tetrahymena thermophila [4]
  • Escherichia coli [4]
  • Methanocaldococcus jannaschii [3]
  • Algoriphagus machipongonensis [2]
  • Lama glama [2]
  • Tetrahymena thermophila [1]

EM Method

  • Single-particle [22]
  • Electron Crystallography [10]
  • Helical reconstruction [5]

Resolution

  • < 2Å [4]
  • ≥ 2Å and < 3Å [12]
  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [6]
  • ≥ 8Å and < 12Å [2]
  • ≥ 12Å and < 16Å [2]

Model molecular weight

  • 0-50 kDa [10]
  • 50-100 kDa [2]
  • 100-250 kDa [2]
  • 250-500 kDa [7]
  • 500-1000 kDa [5]
  • 2-5 MDa [3]
  • 5-10 MDa [2]
  • > 10 MDa [1]

Release Date

  • 2025 [7]
  • 2024 [9]
  • 2023 [5]
  • 2022 [5]
  • 2020 [1]
  • 2019 [1]
  • 2016 [3]
  • 2015 [4]
  • 2011 [2]

Author by name

  • Gonen T [8]
  • Chang C [4]
  • Chang CI [4]
  • Gao Y [4]
  • Gong Q [4]
  • Hattne J [4]
  • Hsieh K [4]
  • Hsieh KY [4]
  • Li M [4]
  • Li S [4]
  • Liu H [4]
  • Martynowycz MW [4]
  • Nannenga BL [4]
  • Shi D [4]
  • Zhang K [4]
  • Zhang S [4]
  • Clabbers MTB [3]
  • Miller AP [3]
  • Reichow SL [3]
  • Agard DA [2]
  • Amunts A [2]
  • Arakawa A [2]
  • Baradaran R [2]
  • Canellas F [2]
  • Cao Y [2]
  • Carrique L [2]
  • Cereghetti G [2]
  • Clausen T [2]
  • Davis BG [2]
  • Duerr K [2]
  • Duerr KL [2]
  • Ehrmann M [2]
  • Eisenstein F [2]
  • Ericson C [2]
  • Ericson CF [2]
  • Fairhead M [2]
  • Feldmuller M [2]
  • Flygaard RK [2]
  • Frey L [2]
  • Gilbert RJC [2]
  • Greenwald J [2]
  • Gruhl T [2]
  • Haapanen O [2]
  • Han F [2]
  • Han FZ [2]
  • He Z [2]
  • Heo Y [2]
  • Hu Y [2]
  • Hu YQ [2]
  • Ishimoto N [2]
  • Jeon H [2]
  • Kadavath H [2]
  • Kawabata H [2]
  • King N [2]
  • Kock Flygaard R [2]
  • Lee I-G [2]
  • Lee YH [2]
  • Leslie AG [2]
  • Leslie AGW [2]
  • Li H [2]
  • Li Y [2]
  • Lien YW [2]
  • Lin Y [2]
  • Liu Y [2]
  • Malet H [2]
  • Mamalis D [2]
  • Marechal A [2]
  • Meier BH [2]
  • Mezzenga R [2]
  • Muhleip A [2]
  • Park JH [2]
  • Park SY [2]
  • Peter M [2]
  • Pilhofer M [2]
  • Pokharna A [2]
  • Rhyner D [2]
  • Riek R [2]
  • Rutaganira FUN [2]
  • Saibil HR [2]
  • Sauer DB [2]
  • Sawa J [2]
  • Sharma V [2]
  • Shirouzu M [2]
  • Thalassinos K [2]
  • Tian H [2]
  • Tobiasson V [2]
  • Verba KA [2]
  • Wang RYR [2]
  • Weber ME [2]
  • Wenchel L [2]
  • Wu M [2]
  • Wu MC [2]
  • Xu J [2]
  • Yan J [2]
  • Ye M [2]
  • Yi G [2]
  • Yokoyama S [2]
  • Yun Y [2]
  • Zhang P [2]
  • Zhou J [2]

Author by ORCID

  • Hattne J [4]
  • Reichow SL [3]
  • Nannenga BL [3]
  • Martynowycz MW [3]
  • Thalassinos K [2]
  • Rutaganira FUN [2]
  • Cereghetti G [2]
  • Tobiasson V [2]
  • Weber ME [2]
  • Pokharna A [2]
  • Frey L [2]
  • Eisenstein F [2]
  • Feldmuller M [2]
  • Zhou L [2]
  • Muhleip A [2]
  • Ehrmann M [2]
  • Haapanen O [2]
  • Peter M [2]
  • Liu Y [2]
  • Malet H [2]
  • Ericson CF [2]
  • Pilhofer M [2]
  • Kadavath H [2]
  • Hu Y [2]
  • Leslie AG [2]
  • Amunts A [2]
  • Mezzenga R [2]
  • Gruhl T [2]
  • Baradaran R [2]
  • Riek R [2]
  • Sharma V [2]
  • Clausen T [2]
  • Xu J [2]
  • Lien YW [2]
  • Yokoyama S [2]
  • Marechal A [2]
  • Agard DA [2]
  • Zhou J [2]
  • Wenchel L [2]
  • Wiese S [1]
  • Iadanza MG [1]
  • Bucker R [1]
  • Gevorkov Y [1]
  • Yan CY [1]
  • Schulz EC [1]
  • Hogan-lamarre P [1]
  • Schonland SO [1]
  • Xie T [1]
  • Zhou H [1]
  • De La Cruz Mj [1]
  • Gonen T [1]
  • Schmidt M [1]
  • Sawaya MR [1]
  • Dwayne Miller Rj [1]
  • Hegenbart U [1]
  • Shi YG [1]
  • Fandrich M [1]
  • Karimi-farsijani S [1]
  • Mehrabi P [1]
  • Sharma K [1]
  • Schwierz N [1]
  • Pfeiffer PB [1]

Journal

  • NAT COMMUN [9]
  • TO BE PUBLISHED [5]
  • FUNDAM RES [4]
  • NAT METHODS [4]
  • J STRUCT BIOL [2]
  • NAT CHEM BIOL [2]
  • NAT MICROBIOL [2]
  • NAT STRUCT MOL BIOL [2]
  • NATURE [2]
  • SCIENCE [2]
  • BIORXIV [1]
  • ELIFE [1]
  • J STRUCT BIOL X [1]
  • PNAS [1]

Software

  • CRYOSPARC [8]
  • RELION [6]
  • AIMLESS [4]
  • CHIMERA [3]
  • REFMAC [3]
  • CHIMERA, FLEX-EM [2]
  • FLEX-EM [2]
  • IMAGIC-5, SPIDER [2]
  • MODELLER, CHIMERA, FLEX-EM [1]
  • MOLREP [1]
  • POINTLESS [1]

Microscope

  • FEI TITAN KRIOS [19]
  • FEI TECNAI F20 [8]
  • TFS KRIOS [6]
  • FEI TECNAI F30 [2]
  • TFS GLACIOS [1]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [37]

Film or detector model

  • FEI FALCON IV 4K X 4K [9]
  • GATAN K3 6K X 4K [7]
  • TVIPS TEMCAM-F416 4K X 4K [4]
  • GATAN K2 QUANTUM 4K X 4K [3]
  • GATAN K3 BIOCONTINUUM 6K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • KODAK SO-163 FILM [2]
  • DIRECT ELECTRON DE-12 4K X 3K [1]
  • FEI CETA 4K X 4K [1]
  • GATAN ULTRASCAN 4000 4K X 4K [1]
  • OTHER [1]

External links

  • AlphaFold DB [33]
  • PDBe-Kb [33]
  • UniProt [33]
  • PDB [32]
  • Gene Ontology [27]
  • InterPro [26]
  • Pfam [26]
  • ChEBI [16]
  • ChEMBL [12]
  • DrugBank [12]
  • EMPIAR [5]
  • CATH [1]