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sample_name:"F-ATP synthase"

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Current Database

  • EMDB [57]

Current status

  • REL [57]

Sample type

  • Protein [57]
  • Complex [56]
  • Ligand [55]
  • Cell [1]

Organism

  • Polytomella sp. pringsheim 198.80 [54]
  • Mycolicibacterium smegmatis [3]
  • (no species) [1]

EM Method

  • Single-particle [56]
  • Subtomogram averaging [1]

Resolution

  • ≥ 2Å and < 3Å [10]
  • ≥ 3Å and < 4Å [38]
  • ≥ 4Å and < 5Å [7]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [7]
  • 500-1000 kDa [48]
  • 1-2 MDa [1]

Release Date

  • 2024 [1]
  • 2022 [3]
  • 2019 [53]

Author by name

  • Kuhlbrandt W [54]
  • Klusch N [53]
  • Langer J [53]
  • Mills DJ [53]
  • Murphy BJ [53]
  • Yildiz O [53]
  • Basak S [3]
  • Dick T [3]
  • Gruber G [3]
  • Grueber G [3]
  • Kerk HW [3]
  • Litty D [3]
  • Muller V [3]
  • Noji H [3]
  • Ragunathan P [3]
  • Sano M [3]
  • Saw W-G [3]
  • Saw WG [3]
  • Ueno H [3]
  • Wong CF [3]
  • Agip AA [1]
  • Agip ANA [1]
  • Dietrich L [1]
  • Kuehlbrandt W [1]
  • Kunz C [1]
  • Schwarz A [1]

Author by ORCID

  • Kuhlbrandt W [54]
  • Murphy BJ [53]
  • Langer J [53]
  • Mills DJ [53]
  • Klusch N [53]
  • Ueno H [3]
  • Muller V [3]
  • Saw WG [3]
  • Wong CF [3]
  • Gruber G [3]
  • Dick T [3]
  • Basak S [3]
  • Agip AA [1]
  • Dietrich L [1]
  • Schwarz A [1]

Journal

  • SCIENCE [54]
  • ANTIMICROB.AGENTS CHEMOTHER. [3]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • PROTEIN SCI [1]

Software

  • RELION [57]
  • COOT [1]
  • CTFFIND [1]
  • STOPGAP [1]

Microscope

  • FEI TITAN KRIOS [57]

Electron Source

  • FIELD EMISSION GUN [57]

Film or detector model

  • FEI FALCON III 4K X 4K [53]
  • GATAN K2 QUANTUM 4K X 4K [3]
  • GATAN K3 6K X 4K [1]

External links

  • AlphaFold DB [57]
  • Gene Ontology [57]
  • InterPro [57]
  • PDB [57]
  • PDBe-Kb [57]
  • Pfam [57]
  • UniProt [57]
  • ChEBI [55]
  • ChEMBL [55]
  • DrugBank [55]
  • EMPIAR [53]
  • SCOP2 [1]
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Showing 1 - 10 of 57. Page 1 of 6
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EMD-19999
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3D View
In situ structure of the peripheral stalk of the mitochondrial ATPsynthase in whole Polytomella cells
Release date: Sept. 18, 2024
Resolution: 5.6 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9evd
Q-score: 0.192

Dietrich L, Agip AA, Kunz C, Schwarz A, Kuhlbrandt W

Science (2024) 385 pp. 1086-1090 [ DOI: doi:10.1126/science.adp4640 Pubmed: 39236170 ]

EMD-33615
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3D View
Cryo-EM structure of F-ATP synthase from Mycolicibacterium smegmatis rotational state 1
Release date: Nov. 23, 2022
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7y5b
Q-score: 0.395

Wong CF, Saw WG, Basak S, Sano M, Ueno H, Kerk HW, Litty D, Ragunathan P, Dick T, Muller V, Noji H, Gruber G

Antimicrob.Agents Chemother. (2022) 66 pp. e0105622-e0105622 [ DOI: doi:10.1128/aac.01056-22 Pubmed: 36445139 ]

EMD-33616
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3D View
Cryo-EM structure of F-ATP synthase from Mycolicibacterium smegmatis rotational state 2
Release date: Nov. 23, 2022
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 7y5c
Q-score: 0.294

Wong CF, Saw WG, Basak S, Sano M, Ueno H, Kerk HW, Litty D, Ragunathan P, Dick T, Muller V, Noji H, Gruber G

Antimicrob.Agents Chemother. (2022) 66 pp. e0105622-e0105622 [ DOI: doi:10.1128/aac.01056-22 Pubmed: 36445139 ]

EMD-33617
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Cryo-EM structure of F-ATP synthase from Mycolicibacterium smegmatis rotational state 3 backbone
Release date: Nov. 23, 2022
Resolution: 7.3 Å
EM Method: Single-particle
Fitted PDBs: 7y5d
Q-score: 0.236

Wong CF, Saw WG, Basak S, Sano M, Ueno H, Kerk HW, Litty D, Ragunathan P, Dick T, Muller V, Noji H, Gruber G

Antimicrob.Agents Chemother. (2022) 66 pp. e0105622-e0105622 [ DOI: doi:10.1128/aac.01056-22 Pubmed: 36445139 ]

EMD-4805
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3D View
Raw data
EMPIAR-10375
CryoEM structure of Polytomella F-ATP synthase, Full dimer, composite map
Release date: July 3, 2019
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6rd4
Q-score: 0.557

Murphy BJ, Klusch N, Langer J, Mills DJ, Yildiz O, Kuhlbrandt W

Science (2019) 364 [ Pubmed: 31221832 DOI: doi:10.1126/science.aaw9128 ]

EMD-4806
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Raw data
EMPIAR-10375
CryoEM structure of Polytomella F-ATP synthase, focussed refinement of Fo and peripheral stalk, C2 symmetry
Release date: July 3, 2019
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 6rd5
Q-score: 0.601

Murphy BJ, Klusch N, Langer J, Mills DJ, Yildiz O, Kuhlbrandt W

Science (2019) 364 [ Pubmed: 31221832 DOI: doi:10.1126/science.aaw9128 ]

EMD-4807
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3D View
Raw data
EMPIAR-10375
CryoEM structure of Polytomella F-ATP synthase, focussed refinement of upper peripheral stalk
Release date: July 3, 2019
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 6rd6
Q-score: 0.587

Murphy BJ, Klusch N, Langer J, Mills DJ, Yildiz O, Kuhlbrandt W

Science (2019) 364 [ Pubmed: 31221832 DOI: doi:10.1126/science.aaw9128 ]

EMD-4808
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3D View
Raw data
EMPIAR-10375
CryoEM structure of Polytomella F-ATP synthase, c-ring position 1, focussed refinement of Fo and peripheral stalk
Release date: July 3, 2019
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 6rd7
Q-score: 0.571

Murphy BJ, Klusch N, Langer J, Mills DJ, Yildiz O, Kuhlbrandt W

Science (2019) 364 [ Pubmed: 31221832 DOI: doi:10.1126/science.aaw9128 ]

EMD-4809
Download Map
3D View
Raw data
EMPIAR-10375
CryoEM structure of Polytomella F-ATP synthase, c-ring position 2, focussed refinement of Fo and peripheral stalk
Release date: July 3, 2019
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 6rd8
Q-score: 0.548

Murphy BJ, Klusch N, Langer J, Mills DJ, Yildiz O, Kuhlbrandt W

Science (2019) 364 [ Pubmed: 31221832 DOI: doi:10.1126/science.aaw9128 ]

EMD-4810
Download Map
3D View
Raw data
EMPIAR-10375
CryoEM structure of Polytomella F-ATP synthase, Primary rotary state 1, composite map
Release date: July 3, 2019
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6rd9
Q-score: 0.57

Murphy BJ, Klusch N, Langer J, Mills DJ, Yildiz O, Kuhlbrandt W

Science (2019) 364 [ Pubmed: 31221832 DOI: doi:10.1126/science.aaw9128 ]

Sort by: Download
Showing 1 - 10 of 57. Page 1 of 6
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [57]

Current status

  • REL [57]

Sample type

  • Protein [57]
  • Complex [56]
  • Ligand [55]
  • Cell [1]

Organism

  • Polytomella sp. pringsheim 198.80 [54]
  • Mycolicibacterium smegmatis [3]
  • (no species) [1]

EM Method

  • Single-particle [56]
  • Subtomogram averaging [1]

Resolution

  • ≥ 2Å and < 3Å [10]
  • ≥ 3Å and < 4Å [38]
  • ≥ 4Å and < 5Å [7]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [7]
  • 500-1000 kDa [48]
  • 1-2 MDa [1]

Release Date

  • 2024 [1]
  • 2022 [3]
  • 2019 [53]

Author by name

  • Kuhlbrandt W [54]
  • Klusch N [53]
  • Langer J [53]
  • Mills DJ [53]
  • Murphy BJ [53]
  • Yildiz O [53]
  • Basak S [3]
  • Dick T [3]
  • Gruber G [3]
  • Grueber G [3]
  • Kerk HW [3]
  • Litty D [3]
  • Muller V [3]
  • Noji H [3]
  • Ragunathan P [3]
  • Sano M [3]
  • Saw W-G [3]
  • Saw WG [3]
  • Ueno H [3]
  • Wong CF [3]
  • Agip AA [1]
  • Agip ANA [1]
  • Dietrich L [1]
  • Kuehlbrandt W [1]
  • Kunz C [1]
  • Schwarz A [1]

Author by ORCID

  • Kuhlbrandt W [54]
  • Murphy BJ [53]
  • Langer J [53]
  • Mills DJ [53]
  • Klusch N [53]
  • Ueno H [3]
  • Muller V [3]
  • Saw WG [3]
  • Wong CF [3]
  • Gruber G [3]
  • Dick T [3]
  • Basak S [3]
  • Agip AA [1]
  • Dietrich L [1]
  • Schwarz A [1]

Journal

  • SCIENCE [54]
  • ANTIMICROB.AGENTS CHEMOTHER. [3]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • PROTEIN SCI [1]

Software

  • RELION [57]
  • COOT [1]
  • CTFFIND [1]
  • STOPGAP [1]

Microscope

  • FEI TITAN KRIOS [57]

Electron Source

  • FIELD EMISSION GUN [57]

Film or detector model

  • FEI FALCON III 4K X 4K [53]
  • GATAN K2 QUANTUM 4K X 4K [3]
  • GATAN K3 6K X 4K [1]

External links

  • AlphaFold DB [57]
  • Gene Ontology [57]
  • InterPro [57]
  • PDB [57]
  • PDBe-Kb [57]
  • Pfam [57]
  • UniProt [57]
  • ChEBI [55]
  • ChEMBL [55]
  • DrugBank [55]
  • EMPIAR [53]
  • SCOP2 [1]