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sample_name:"Dinoroseobacter phage vB_DshS-R4C"

Filter By

Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Virus [7]
  • Protein [5]

Organism

  • Dinoroseobacter phage vb_dshs-r4c [7]

EM Method

  • Single-particle [6]
  • Helical reconstruction [1]

Resolution

  • ≥ 3Å and < 4Å [2]
  • ≥ 4Å and < 5Å [2]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 500-1000 kDa [2]
  • > 10 MDa [1]

Release Date

  • 2023 [7]

Author by name

  • Cai L [7]
  • Chen Z [7]
  • Gu Y [7]
  • Huang Y [7]
  • Jiang Y [7]
  • Kong Z [7]
  • Li S [7]
  • Li T [7]
  • Liu L [7]
  • Que Y [7]
  • Sun H [7]
  • Wei S [7]
  • Xia N [7]
  • Xin J [7]
  • Yu H [7]
  • Zhang J [7]
  • Zhang R [7]
  • Zheng Q [7]

Author by ORCID

  • Cai L [7]
  • Gu Y [7]
  • Li S [7]
  • Zhang J [7]
  • Zheng Q [7]
  • Li T [7]
  • Xia N [7]
  • Zhang R [7]

Journal

  • NAT COMMUN [7]

Microscope

  • FEI TECNAI F30 [7]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • FEI FALCON III 4K X 4K [7]

External links

  • PDB [5]
  • UniProt [5]
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EMD-34247
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3D View
Cryo-EM structure of the marine siphophage vB_Dshs-R4C capsid
Release date: July 12, 2023
Resolution: 3.63 Å
EM Method: Single-particle
Fitted PDBs: 8gta
Q-score: 0.475

Huang Y, Sun H, Wei S, Cai L, Liu L, Jiang Y, Xin J, Chen Z, Que Y, Kong Z, Li T, Yu H, Zhang J, Gu Y, Zheng Q, Li S, Zhang R, Xia N

Nat Commun (2023) 14 pp. 3609-3609 [ Pubmed: 37330604 DOI: doi:10.1038/s41467-023-39220-y ]

EMD-34248
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3D View
Cryo-EM structure of the marine siphophage vB_DshS-R4C tail tube protein
Release date: July 12, 2023
Resolution: 3.43 Å
EM Method: Helical reconstruction
Fitted PDBs: 8gtb
Q-score: 0.02

Huang Y, Sun H, Wei S, Cai L, Liu L, Jiang Y, Xin J, Chen Z, Que Y, Kong Z, Li T, Yu H, Zhang J, Gu Y, Zheng Q, Li S, Zhang R, Xia N

Nat Commun (2023) 14 pp. 3609-3609 [ Pubmed: 37330604 DOI: doi:10.1038/s41467-023-39220-y ]

EMD-34249
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3D View
Cryo-EM model of the marine siphophage vB_DshS-R4C baseplate-tail complex
Release date: July 12, 2023
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8gtc
Q-score: 0.275

Huang Y, Sun H, Wei S, Cai L, Liu L, Jiang Y, Xin J, Chen Z, Que Y, Kong Z, Li T, Yu H, Zhang J, Gu Y, Zheng Q, Li S, Zhang R, Xia N

Nat Commun (2023) 14 pp. 3609-3609 [ Pubmed: 37330604 DOI: doi:10.1038/s41467-023-39220-y ]

EMD-34250
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3D View
Cryo-EM model of the marine siphophage vB_DshS-R4C portal-adaptor complex
Release date: July 12, 2023
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 8gtd
Q-score: 0.238

Huang Y, Sun H, Wei S, Cai L, Liu L, Jiang Y, Xin J, Chen Z, Que Y, Kong Z, Li T, Yu H, Zhang J, Gu Y, Zheng Q, Li S, Zhang R, Xia N

Nat Commun (2023) 14 pp. 3609-3609 [ Pubmed: 37330604 DOI: doi:10.1038/s41467-023-39220-y ]

EMD-34252
Download Map
3D View
Cryo-EM model of the marine siphophage vB_DshS-R4C stopper-terminator complex
Release date: July 12, 2023
Resolution: 6.6 Å
EM Method: Single-particle
Fitted PDBs: 8gtf
Q-score: 0.16

Huang Y, Sun H, Wei S, Cai L, Liu L, Jiang Y, Xin J, Chen Z, Que Y, Kong Z, Li T, Yu H, Zhang J, Gu Y, Zheng Q, Li S, Zhang R, Xia N

Nat Commun (2023) 14 pp. 3609-3609 [ Pubmed: 37330604 DOI: doi:10.1038/s41467-023-39220-y ]

EMD-34253
Download Map
3D View
Dinoroseobacter phage vB_DshS-R4C C1 portal vertex
Release date: July 12, 2023
Resolution: 11.5 Å
EM Method: Single-particle

Huang Y, Sun H, Wei S, Cai L, Liu L, Jiang Y, Xin J, Chen Z, Que Y, Kong Z, Li T, Yu H, Zhang J, Gu Y, Zheng Q, Li S, Zhang R, Xia N

Nat Commun (2023) 14 pp. 3609-3609 [ Pubmed: 37330604 DOI: doi:10.1038/s41467-023-39220-y ]

EMD-34254
Download Map
3D View
Dinoroseobacter phage vB_DshS-R4C C5 portal vertex
Release date: July 12, 2023
Resolution: 6.6 Å
EM Method: Single-particle

Huang Y, Sun H, Wei S, Cai L, Liu L, Jiang Y, Xin J, Chen Z, Que Y, Kong Z, Li T, Yu H, Zhang J, Gu Y, Zheng Q, Li S, Zhang R, Xia N

Nat Commun (2023) 14 pp. 3609-3609 [ Pubmed: 37330604 DOI: doi:10.1038/s41467-023-39220-y ]

Sort by: Download
Showing 1 - 7 of 7. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Virus [7]
  • Protein [5]

Organism

  • Dinoroseobacter phage vb_dshs-r4c [7]

EM Method

  • Single-particle [6]
  • Helical reconstruction [1]

Resolution

  • ≥ 3Å and < 4Å [2]
  • ≥ 4Å and < 5Å [2]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 500-1000 kDa [2]
  • > 10 MDa [1]

Release Date

  • 2023 [7]

Author by name

  • Cai L [7]
  • Chen Z [7]
  • Gu Y [7]
  • Huang Y [7]
  • Jiang Y [7]
  • Kong Z [7]
  • Li S [7]
  • Li T [7]
  • Liu L [7]
  • Que Y [7]
  • Sun H [7]
  • Wei S [7]
  • Xia N [7]
  • Xin J [7]
  • Yu H [7]
  • Zhang J [7]
  • Zhang R [7]
  • Zheng Q [7]

Author by ORCID

  • Cai L [7]
  • Gu Y [7]
  • Li S [7]
  • Zhang J [7]
  • Zheng Q [7]
  • Li T [7]
  • Xia N [7]
  • Zhang R [7]

Journal

  • NAT COMMUN [7]

Microscope

  • FEI TECNAI F30 [7]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • FEI FALCON III 4K X 4K [7]

External links

  • PDB [5]
  • UniProt [5]