Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!
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Current Database
- EMDB [19736]
Current status
- REL [19736]
Sample type
- Complex [18572]
- Protein [14843]
- Ligand [9268]
- RNA [2269]
- DNA [2103]
- Sample [915]
- Cellular component [488]
- Cell [166]
- Virus [136]
- Other [84]
- Tissue [6]
Organism
- Homo sapiens [9329]
- Synthetic construct [1765]
- Mus musculus [1595]
- Severe acute respiratory syndrome coronavirus [1321]
- Escherichia coli [1206]
- Saccharomyces cerevisiae [1148]
- Human immunodeficiency virus 1 [597]
- Bos taurus [511]
- Rattus norvegicus [510]
- Sus scrofa [506]
- Saccharomyces cerevisiae [478]
- Oryctolagus cuniculus [475]
- Lama glama [433]
- Escherichia coli [423]
- Xenopus laevis [332]
- Macaca mulatta [316]
- Influenza a virus [182]
- Arabidopsis thaliana [143]
- Vicugna pacos [128]
- Drosophila melanogaster [125]
- Mycolicibacterium smegmatis [116]
- Bacillus subtilis [114]
- Mycobacterium tuberculosis [111]
- Gallus gallus [107]
- Escherichia coli [100]
- Ovis aries [98]
- Staphylococcus aureus [83]
- Chlamydomonas reinhardtii [78]
- Chaetomium thermophilum [76]
- Chaetomium thermophilum [74]
- Streptococcus pyogenes [70]
- Macaca fascicularis [65]
- Pseudomonas aeruginosa [61]
- Plasmodium falciparum [61]
- Danio rerio [60]
- Mycobacterium tuberculosis [60]
- Severe acute respiratory syndrome coronavirus [59]
- Thermus thermophilus [57]
- Enterobacteria phage t4 [53]
- Cricetulus griseus [52]
- Bacillus subtilis [52]
- Human immunodeficiency virus [51]
- Lassa mammarenavirus [50]
- Caenorhabditis elegans [50]
- Amanita phalloides [48]
- Salmonella enterica [43]
- Human herpesvirus 1 [42]
- African swine fever virus [42]
- Plasmodium falciparum [42]
- Middle east respiratory syndrome-related coronavirus [41]
- Schizosaccharomyces pombe [41]
- (no species) [41]
- Salmonella enterica [39]
- Zaire ebolavirus [37]
- Clostridium botulinum [37]
- Thermus thermophilus [36]
- Enterobacteria phage t4 [35]
- Pseudomonas aeruginosa [34]
- Yarrowia lipolytica [34]
- Klebsiella pneumoniae [33]
- Monkeypox virus [31]
- Dna molecule [31]
- Dictyostelium discoideum [31]
- Komagataella phaffii [31]
- Canis lupus [31]
- Schizosaccharomyces pombe [30]
- Escherichia virus t7 [29]
- Aequorea victoria [29]
- Shigella flexneri [29]
- Human cytomegalovirus [28]
- Zaire ebolavirus [28]
- Kluyveromyces lactis [28]
- (no species) [27]
- Tetrahymena thermophila [27]
- Influenza a virus [27]
- Thermotoga maritima [26]
- Chikungunya virus [26]
- Komagataella phaffii [26]
- Sus scrofa [26]
- Unidentified adenovirus [24]
- Nipah virus [24]
- (no species) [23]
- Semliki forest virus [23]
- Synechocystis sp. pcc 6803 [23]
- Listeria innocua [22]
- Spodoptera frugiperda [22]
- Human herpesvirus 1 [21]
- Epstein-barr virus (strain gd1) [21]
- Acetivibrio thermocellus [21]
- Betacoronavirus 1 [21]
- Vibrio cholerae [21]
- Trichoplusia ni [21]
- Synechocystis sp. pcc 6803 [20]
- Enterovirus b [20]
- (no species) [20]
- Saccharolobus solfataricus [20]
- Escherichia phage lambda [20]
- Spinacia oleracea [20]
- Saccharomyces cerevisiae [20]
- Streptomyces coelicolor [19]
EM Method
- Single-particle [18957]
- Subtomogram averaging [409]
- Helical reconstruction [302]
- Tomography [64]
- Electron Crystallography [4]
Resolution
- < 2Å [48]
- ≥ 2Å and < 3Å [4130]
- ≥ 3Å and < 4Å [9247]
- ≥ 4Å and < 5Å [2157]
- ≥ 5Å and < 6Å [444]
- ≥ 6Å and < 8Å [897]
- ≥ 8Å and < 12Å [636]
- ≥ 12Å and < 16Å [289]
- ≥ 16Å and < 20Å [332]
- ≥ 20Å and < 30Å [1160]
- ≥ 30Å [340]
Model molecular weight
- 0-50 kDa [127]
- 50-100 kDa [728]
- 100-250 kDa [4572]
- 250-500 kDa [3552]
- 500-1000 kDa [2151]
- 1-2 MDa [899]
- 2-5 MDa [873]
- 5-10 MDa [135]
- > 10 MDa [70]
Release Date
- 2026 [30]
- 2025 [4607]
- 2024 [3845]
- 2023 [2847]
- 2022 [2349]
- 2021 [1756]
- 2020 [1453]
- 2019 [833]
- 2018 [550]
- 2017 [322]
- 2016 [379]
- 2015 [195]
- 2014 [121]
- 2013 [128]
- 2012 [91]
- 2011 [68]
- 2010 [46]
- 2009 [36]
- 2008 [9]
- 2007 [29]
- 2006 [21]
- 2005 [4]
- 2004 [10]
- 2003 [7]
Author by name
- Ward AB [1195]
- Wang Y [787]
- Zhang Y [737]
- Wang X [603]
- Zhang Z [565]
- Liu Y [564]
- Zhang X [550]
- Li Y [508]
- Zhang L [467]
- Li J [433]
- Li X [419]
- Ozorowski G [410]
- Gao Y [408]
- Wang J [402]
- Li Z [381]
- Liu L [373]
- Han J [369]
- Li H [368]
- Wang L [364]
- Chen Y [360]
- Wang H [354]
- Burton DR [351]
- Cottrell CA [349]
- Torres JL [348]
- Zhang J [337]
- Wang C [332]
- Li S [326]
- Shi Y [322]
- Chen X [317]
- Wilson IA [317]
- Richey ST [315]
- Jiang Y [308]
- Xu Y [308]
- Sanders RW [307]
- Wang Q [294]
- Chen Z [288]
- Zhang S [276]
- Zhang H [268]
- Yuan Q [261]
- Yu X [254]
- Zhang C [253]
- Zhou Q [252]
- Liu C [250]
- Skiniotis G [250]
- Sewall LM [243]
- Chen J [240]
- Zhu Y [239]
- Wang S [238]
- Li W [235]
- Kwong PD [233]
- Kobilka BK [228]
- Liu X [228]
- Xu HE [228]
- Li T [227]
- Yang Y [227]
- Lu Y [226]
- Zhao Y [219]
- Liu Z [217]
- Zhang B [217]
- Cramer P [216]
- Yang YR [215]
- Huang Y [214]
- Montefiori DC [214]
- Zhu X [213]
- Liu J [210]
- Liu S [210]
- Marks AR [209]
- Van Gils Mj [208]
- Turner HL [206]
- Lee WH [205]
- Gao H [204]
- Silvestri G [201]
- Zhou Y [201]
- Crispin M [200]
- Zheng Q [199]
- Jackson AM [196]
- Rodriguez AJ [196]
- Yang X [196]
- Seven AB [193]
- Yu J [193]
- Wang Z [190]
- Papasergi-scott MM [189]
- Gmeiner P [188]
- Panova O [188]
- Carnathan DG [187]
- Crotty S [187]
- Xu J [187]
- He F [186]
- Nureki O [184]
- Copps J [183]
- Miotto MC [183]
- Beckmann R [182]
- Schief WR [178]
- Krammer F [177]
- Wu Y [176]
- Li L [175]
- Moore JP [175]
- Zhao J [174]
- Allen JD [172]
- Hilger D [172]
Author by ORCID
- Ward AB [618]
- Torres JL [300]
- Ozorowski G [261]
- Skiniotis G [240]
- Cottrell CA [221]
- Kobilka BK [214]
- Crispin M [200]
- Kwong PD [197]
- Burton DR [187]
- Gmeiner P [185]
- He F [182]
- Gao Y [181]
- Papasergi-scott MM [181]
- Allen JD [172]
- Hilger D [166]
- Panova O [162]
- Batebi H [160]
- Perez-hernandez G [160]
- Hildebrand PW [160]
- Van Gils Mj [159]
- Miotto MC [153]
- Xu HE [142]
- Copps J [138]
- Li H [135]
- Sanders RW [135]
- Kanekiyo M [134]
- Crotty S [132]
- Weninger G [126]
- Raunser S [125]
- Perrett HR [123]
- Hirst J [121]
- Nureki O [121]
- Beckmann R [121]
- Han J [118]
- Schmitz AJ [117]
- Gao N [112]
- Krammer F [112]
- Crowe Jr Je [111]
- Sewall LM [111]
- Schief WR [107]
- Wilson IA [106]
- Lee WH [105]
- Cheng Y [103]
- Wronska A [102]
- Zheng Q [100]
- Zhang Y [100]
- Steyaert J [99]
- Yuan M [98]
- Gao GF [98]
- Urlaub H [97]
- Yang W [96]
- Subramaniam S [95]
- Georgeson E [94]
- Irvine DJ [94]
- Rubinstein JL [94]
- Yang D [91]
- Pardon E [90]
- Wang MW [89]
- King NP [89]
- Wang X [89]
- Bridges HR [86]
- Yin Z [86]
- Yang M [86]
- Sok D [86]
- Hummer G [85]
- Sun JP [85]
- Dridi H [83]
- Hurley JH [82]
- Blaza JN [82]
- Cramer P [82]
- Nogal B [81]
- Xu Y [81]
- Labranche C [81]
- Xiao P [81]
- Silvestri G [80]
- Aricescu AR [79]
- Barford D [78]
- Venugopal H [77]
- Leon AN [77]
- Chung I [77]
- Zhou Q [77]
- Van Schooten J [76]
- Wilson DN [75]
- Gu J [74]
- Kosinski J [74]
- Sano FK [74]
- Chopde A [74]
- Bjorkman PJ [73]
- Bai XC [73]
- Moore JP [73]
- Zhao M [72]
- Kravchuk V [72]
- Sazanov L [72]
- Marks AR [72]
- Turner JS [72]
- Muller CW [71]
- Wootten D [71]
- Malinauskas T [70]
- Yan R [70]
- Xia N [70]
Journal
- NAT COMMUN [3450]
- NATURE [2177]
- TO BE PUBLISHED [1760]
- NAT STRUCT MOL BIOL [1212]
- SCIENCE [1204]
- CELL [984]
- PNAS [943]
- MOL CELL [938]
- BIORXIV [818]
- SCI ADV [672]
- CELL REP [619]
- ELIFE [549]
- NUCLEIC ACIDS RES [349]
- STRUCTURE [332]
- CELL RES [327]
- EMBO J [241]
- CELL DISCOV [238]
- PLOS PATHOG [193]
- NAT CHEM BIOL [190]
- IMMUNITY [175]
- COMMUN BIOL [170]
- J MOL BIOL [158]
- J VIROL [153]
- J BIOL CHEM [148]
- MBIO [114]
- ACTA CRYSTALLOGR D STRUCT BIOL [113]
- NAT MICROBIOL [104]
- CELL HOST MICROBE [99]
- NPJ VACCINES [97]
- SCI TRANSL MED [83]
- PROTEIN CELL [71]
- EMBO REP [70]
- PLOS BIOL [66]
- J AM CHEM SOC [62]
- NAT PLANTS [61]
- SCI IMMUNOL [61]
- J STRUCT BIOL [45]
- SCI REP [43]
- ISCIENCE [41]
- SIGNAL TRANSDUCT TARGET THER [41]
- J CLIN INV [40]
- J MED CHEM [37]
- EBIOMEDICINE [35]
- J CELL BIOL [34]
- PLOS ONE [32]
- ADV SCI [31]
- INT J BIOL MACROMOL [31]
- IUCRJ [29]
- PROTEIN SCI [27]
- PNAS NEXUS [25]
- NAT IMMUNOL [24]
- BIOCHEMISTRY [23]
- BLOOD [23]
- NAT METHODS [23]
- RES SQ [23]
- EMERG MICROBES INFECT [22]
- NEURON [21]
- DEV CELL [19]
- VIRUSES [19]
- BIOCHEM BIOPHYS RES COMMUN [18]
- LIFE SCI ALLIANCE [18]
- ANGEW CHEM INT ED ENGL [17]
- CELL REP MED [17]
- NAT CATAL [17]
- NAT CELL BIOL [17]
- BIOCHEM J [16]
- FRONT IMMUNOL [16]
- J EXP MED [16]
- J STRUCT BIOL X [16]
- NAT BIOMED ENG [15]
- GENES DEV [14]
- PLANT CELL [14]
- INT J MOL SCI [13]
- MEDCOMM (2020) [12]
- NAT BIOTECHNOL [12]
- NPJ VIRUSES [12]
- ACTA PHARMACOL.SIN. [11]
- HLIFE [11]
- MOL MICROBIOL [11]
- MOL PLANT [11]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [10]
- FEBS J [10]
- J HEPATOL [10]
- NAT CHEM [10]
- NATL SCI REV [10]
- CELL CHEM BIOL [9]
- MSPHERE [9]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [8]
- CURR BIOL [8]
- J GEN PHYSIOL [8]
- MOL BIOL CELL [8]
- PLANT COMMUN. [8]
- RNA [8]
- CELL METAB. [7]
- J LIPID RES [7]
- NAT MED [7]
- PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES USA [7]
- SCI BULL (BEIJING) [7]
- SCI SIGNAL [7]
- ACS INFECT DIS. [6]
Software
- CRYOSPARC [5197]
- RELION [5033]
- CTFFIND [746]
- GCTF [434]
- CISTEM [152]
- SPIDER [145]
- COOT [144]
- CHIMERA [134]
- EMAN2 [107]
- FREALIGN [101]
- WARP [96]
- IMOD [73]
- EMAN [66]
- SPHIRE [66]
- NOVASTA [52]
- IMAGIC [50]
- PHENIX [50]
- UCSF CHIMERA [47]
- UCSF CHIMERAX [47]
- DYNAMO [41]
- SPARX [36]
- PEET [22]
- TOM [21]
- XMIPP [19]
- AV3 [16]
- IMAGIC, CUSTOM, SPIDER [16]
- NOVACTF [16]
- EMAN2, RELION [15]
- SIMPLE [15]
- PYTOM [14]
- SPIDER, RELION [14]
- TOMOCTF [14]
- MDFF [13]
- SITUS [13]
- CRYOLO [12]
- IMAGIC, SPIDER [12]
- JSPR [12]
- CTFFIND3, RELION [11]
- SIGNATURE, CTFFIND3, SPIDER, SPARX [11]
- CTFFIND3 [10]
- EM3DR2 [10]
- EMAN2, SPARX [10]
- CHIMERA, MDFF [9]
- EMCLARITY [9]
- EMFIT [9]
- ISOLDE [9]
- AUTO3DEM [8]
- CTFFIND4 [8]
- RELION, FREALIGN [8]
- SPIDER, EMAN [8]
- SPIDER, EMAN2 [8]
- CTFIND3 [7]
- EMAN2, IMAGIC, RELION-1.3 [7]
- IMAGIC-5, SPIDER [7]
- IMOD, TOM, AV3 [7]
- O [7]
- SPARX/EMAN2 [7]
- AMIRA [6]
- APPION [6]
- CHIMERA, COOT [6]
- CHIMERA, PHENIX [6]
- EMAN2, FREALIGN [6]
- EMAN2, SPIDER, BESPOKE-2D-ALIGNMENT, BESPOKE-X-AND-Y-SHIFTING [6]
- IPET [6]
- MPSA [6]
- MRC, IMAGIC, SPIDER [6]
- SPIDER, PACKAGE [6]
- SPIDER, TOM_TOOLBOX [6]
- TOM TOOLBOX [6]
- UNBLUR, CTFFIND4, FREALIGN [6]
- CHIMERA, REFMAC [5]
- CHIMERA, ROSETTA, PHENIX, COOT [5]
- CHIMERA, SITUS [5]
- COMET [5]
- COOT, SPDBV, REFMAC5 [5]
- CTFFIND3, EMAN2, RELION [5]
- EMAN, EMAN2, XMIPP [5]
- EMAN2, RELION1.2 [5]
- EMAN2/SPARX [5]
- GAP [5]
- IHRSR [5]
- IMAGIC, EMAN, FREALIGN, SPIDER, GAP [5]
- IMOD, TOM, PACKAGE, MATLAB [5]
- J3DR [5]
- MATLAB [5]
- SPIDER, SPARX [5]
- STOPGAP [5]
- BSOFT [4]
- CHIMERA, EMFIT, COOT [4]
- CTFPHASEFLIP [4]
- DIREX [4]
- EMAN, SPIDER [4]
- EMAN2, XMIPP, IMAGIC [4]
- FLEX-EM [4]
- IMAGIC V [4]
- IMAGIC-5 [4]
- JSPR, EMAN, EMAN2 [4]
- SCIPION [4]
- XMIPP, EMAN2, SPARX [4]
- CHIMERA, COOT, REFMAC [3]
Microscope
- FEI TITAN KRIOS [11505]
- TFS KRIOS [3702]
- FEI TALOS ARCTICA [1093]
- TFS GLACIOS [629]
- FEI TECNAI F20 [444]
- FEI TECNAI SPIRIT [443]
- FEI POLARA 300 [322]
- FEI TITAN [234]
- FEI TECNAI F30 [204]
- JEOL CRYO ARM 300 [203]
- FEI TECNAI ARCTICA [131]
- FEI TECNAI 20 [116]
- FEI TECNAI 12 [102]
- TFS TALOS [93]
- FEI/PHILIPS CM200FEG [77]
- TFS TALOS L120C [50]
- JEOL 2100F [47]
- TFS TALOS F200C [43]
- FEI/PHILIPS EM420 [41]
- JEOL 2010F [39]
- JEOL 3200FSC [39]
- JEOL 2100 [27]
- JEOL 2200FS [19]
- JEOL 3200FS [19]
- FEI/PHILIPS CM300FEG/T [12]
- JEOL 1200EXII [12]
- JEOL CRYO ARM 200 [12]
- TFS TITAN THEMIS [12]
- JEOL 1230 [11]
- JEOL 1400 [10]
- FEI/PHILIPS CM300FEG/HE [8]
- ZEISS LIBRA120PLUS [8]
- FEI MORGAGNI [6]
- FEI/PHILIPS CM120T [5]
- JEOL 3100FFC [5]
- OTHER [5]
- FEI TECNAI 10 [4]
- FEI/PHILIPS CM200FEG/ST [3]
- FEI/PHILIPS CM200FEG/UT [3]
- JEOL 2200FSC [3]
- JEOL 3000SFF [3]
- FEI/PHILIPS CM300FEG/ST [2]
- JEOL 1010 [2]
- JEOL 1200EX [2]
- JEOL 4000EX [2]
- JEOL KYOTO-3000SFF [2]
- FEI/PHILIPS CM12 [1]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- JEOL 100CX [1]
- JEOL 1200 [1]
- JEOL 1400/HR YPS FEG [1]
- JEOL 2010 [1]
- JEOL 2010HC [1]
- SHUIMU TOTEM 300S [1]
Electron Source
- FIELD EMISSION GUN [18871]
- LAB6 [677]
- OTHER [148]
- TUNGSTEN HAIRPIN [41]
Film or detector model
- GATAN K3 6K X 4K [5501]
- GATAN K3 BIOQUANTUM 6K X 4K [4099]
- GATAN K2 SUMMIT 4K X 4K [3831]
- FEI FALCON IV 4K X 4K [1664]
- FEI FALCON III 4K X 4K [1028]
- GATAN K2 QUANTUM 4K X 4K [653]
- FEI FALCON II 4K X 4K [476]
- TVIPS TEMCAM-F416 4K X 4K [432]
- TFS FALCON 4I 4K X 4K [344]
- FEI EAGLE 4K X 4K [289]
- FEI CETA 4K X 4K [226]
- KODAK SO-163 FILM [210]
- GATAN ULTRASCAN 4000 4K X 4K [186]
- OTHER [154]
- GATAN K3 BIOCONTINUUM 6K X 4K [149]
- GATAN K2 BASE 4K X 4K [87]
- GATAN K2 4K X 4K [59]
- TVIPS TEMCAM-F415 4K X 4K [43]
- GENERIC CCD [30]
- GATAN ULTRASCAN 1000 2K X 2K [29]
- GENERIC TVIPS 4K X 4K [28]
- GENERIC GATAN 4K X 4K [26]
- DIRECT ELECTRON DE-20 5K X 3K [24]
- FEI EAGLE 2K X 2K [24]
- GENERIC GATAN [19]
- TVIPS TEMCAM-F816 8K X 8K [15]
- DIRECT ELECTRON DE-16 4K X 4K [12]
- DIRECT ELECTRON DE-64 8K X 8K [12]
- FEI FALCON I 4K X 4K [12]
- GATAN K2 IS 4K X 4K [12]
- DIRECT ELECTRON APOLLO 4K X 4K [10]
- DIRECT ELECTRON DE-10 5K X 4K [9]
- GATAN MULTISCAN [9]
- GENERIC FILM [6]
- TVIPS TEMCAM-F224 2K X 2K [6]
- DIRECT ELECTRON DE-12 4K X 3K [5]
- GATAN ALPINE 2.3K X 3.2K [3]
- GENERIC GATAN 2K X 2K [3]
- GENERIC TVIPS [3]
- GENERIC IMAGE PLATES [2]
- KODAK 4489 FILM [2]
- DECTRIS SINGLA 1K X 1K [1]
- GATAN ORIUS SC200 2K X 2K [1]
- GATAN ORIUS SC600 2.7K X 2.7K [1]
- GENERIC TVIPS 2K X 2K [1]
External links
- UniProt [13758]
- PDB [13165]
- PDBe-Kb [12778]
- AlphaFold DB [12477]
- Pfam [11372]
- Gene Ontology [10626]
- InterPro [10057]
- ChEBI [8650]
- ChEMBL [8049]
- DrugBank [6920]
- Complex Portal [4692]
- EMPIAR [1376]
- SCOP2 [292]
- CATH [185]
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 8y71
Q-score: 0.508
Luo P, Xu Y, Wang Y, Zhuang Y, Xu HE
To Be Published
Resolution: 2.36 Å
EM Method: Single-particle
Whyms C, Zhao Y, Addo-Yobo D, He H, Whittington AC, Trasanidou D, Salazar CRP, Staals RHJ, Li H
EMBO J (2025) 44 pp. 6919-6943 [ Pubmed: 41107544 DOI: doi:10.1038/s44318-025-00578-y ]
Resolution: 2.53 Å
EM Method: Single-particle
Whyms C, Zhao Y, Addo-Yobo D, He H, Whittington AC, Trasanidou D, Salazar CRP, Staals RHJ, Li H
EMBO J (2025) 44 pp. 6919-6943 [ Pubmed: 41107544 DOI: doi:10.1038/s44318-025-00578-y ]
Resolution: 2.31 Å
EM Method: Single-particle
Whyms C, Zhao Y, Addo-Yobo D, He H, Whittington AC, Trasanidou D, Salazar CRP, Staals RHJ, Li H
EMBO J (2025) 44 pp. 6919-6943 [ Pubmed: 41107544 DOI: doi:10.1038/s44318-025-00578-y ]
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 9ebt
Q-score: 0.664
Whyms C, Zhao Y, Addo-Yobo D, He H, Whittington AC, Trasanidou D, Salazar CRP, Staals RHJ, Li H
EMBO J (2025) 44 pp. 6919-6943 [ Pubmed: 41107544 DOI: doi:10.1038/s44318-025-00578-y ]
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9eka
Q-score: 0.351
Whyms C, Zhao Y, Addo-Yobo D, He H, Whittington AC, Trasanidou D, Salazar CRP, Staals RHJ, Li H
EMBO J (2025) 44 pp. 6919-6943 [ Pubmed: 41107544 DOI: doi:10.1038/s44318-025-00578-y ]
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 9mu7
Q-score: 0.393
Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache J-P, Murakami K
To Be Published
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 9l76
Q-score: 0.506
Zhu J, Zhang K, Gennis RB, Li J
To Be Published
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 9lbw
Q-score: 0.523
Kuang M, Chen SL
To Be Published
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 9lco
Q-score: 0.315
Wei C, Jialiang W, Zhijun W
To Be Published
Filter By
Current Database
- EMDB [19736]
Current status
- REL [19736]
Sample type
- Complex [18572]
- Protein [14843]
- Ligand [9268]
- RNA [2269]
- DNA [2103]
- Sample [915]
- Cellular component [488]
- Cell [166]
- Virus [136]
- Other [84]
- Tissue [6]
Organism
- Homo sapiens [9329]
- Synthetic construct [1765]
- Mus musculus [1595]
- Severe acute respiratory syndrome coronavirus [1321]
- Escherichia coli [1206]
- Saccharomyces cerevisiae [1148]
- Human immunodeficiency virus 1 [597]
- Bos taurus [511]
- Rattus norvegicus [510]
- Sus scrofa [506]
- Saccharomyces cerevisiae [478]
- Oryctolagus cuniculus [475]
- Lama glama [433]
- Escherichia coli [423]
- Xenopus laevis [332]
- Macaca mulatta [316]
- Influenza a virus [182]
- Arabidopsis thaliana [143]
- Vicugna pacos [128]
- Drosophila melanogaster [125]
- Mycolicibacterium smegmatis [116]
- Bacillus subtilis [114]
- Mycobacterium tuberculosis [111]
- Gallus gallus [107]
- Escherichia coli [100]
- Ovis aries [98]
- Staphylococcus aureus [83]
- Chlamydomonas reinhardtii [78]
- Chaetomium thermophilum [76]
- Chaetomium thermophilum [74]
- Streptococcus pyogenes [70]
- Macaca fascicularis [65]
- Pseudomonas aeruginosa [61]
- Plasmodium falciparum [61]
- Danio rerio [60]
- Mycobacterium tuberculosis [60]
- Severe acute respiratory syndrome coronavirus [59]
- Thermus thermophilus [57]
- Enterobacteria phage t4 [53]
- Cricetulus griseus [52]
- Bacillus subtilis [52]
- Human immunodeficiency virus [51]
- Lassa mammarenavirus [50]
- Caenorhabditis elegans [50]
- Amanita phalloides [48]
- Salmonella enterica [43]
- Human herpesvirus 1 [42]
- African swine fever virus [42]
- Plasmodium falciparum [42]
- Middle east respiratory syndrome-related coronavirus [41]
- Schizosaccharomyces pombe [41]
- (no species) [41]
- Salmonella enterica [39]
- Zaire ebolavirus [37]
- Clostridium botulinum [37]
- Thermus thermophilus [36]
- Enterobacteria phage t4 [35]
- Pseudomonas aeruginosa [34]
- Yarrowia lipolytica [34]
- Klebsiella pneumoniae [33]
- Monkeypox virus [31]
- Dna molecule [31]
- Dictyostelium discoideum [31]
- Komagataella phaffii [31]
- Canis lupus [31]
- Schizosaccharomyces pombe [30]
- Escherichia virus t7 [29]
- Aequorea victoria [29]
- Shigella flexneri [29]
- Human cytomegalovirus [28]
- Zaire ebolavirus [28]
- Kluyveromyces lactis [28]
- (no species) [27]
- Tetrahymena thermophila [27]
- Influenza a virus [27]
- Thermotoga maritima [26]
- Chikungunya virus [26]
- Komagataella phaffii [26]
- Sus scrofa [26]
- Unidentified adenovirus [24]
- Nipah virus [24]
- (no species) [23]
- Semliki forest virus [23]
- Synechocystis sp. pcc 6803 [23]
- Listeria innocua [22]
- Spodoptera frugiperda [22]
- Human herpesvirus 1 [21]
- Epstein-barr virus (strain gd1) [21]
- Acetivibrio thermocellus [21]
- Betacoronavirus 1 [21]
- Vibrio cholerae [21]
- Trichoplusia ni [21]
- Synechocystis sp. pcc 6803 [20]
- Enterovirus b [20]
- (no species) [20]
- Saccharolobus solfataricus [20]
- Escherichia phage lambda [20]
- Spinacia oleracea [20]
- Saccharomyces cerevisiae [20]
- Streptomyces coelicolor [19]
EM Method
- Single-particle [18957]
- Subtomogram averaging [409]
- Helical reconstruction [302]
- Tomography [64]
- Electron Crystallography [4]
Resolution
- < 2Å [48]
- ≥ 2Å and < 3Å [4130]
- ≥ 3Å and < 4Å [9247]
- ≥ 4Å and < 5Å [2157]
- ≥ 5Å and < 6Å [444]
- ≥ 6Å and < 8Å [897]
- ≥ 8Å and < 12Å [636]
- ≥ 12Å and < 16Å [289]
- ≥ 16Å and < 20Å [332]
- ≥ 20Å and < 30Å [1160]
- ≥ 30Å [340]
Model molecular weight
- 0-50 kDa [127]
- 50-100 kDa [728]
- 100-250 kDa [4572]
- 250-500 kDa [3552]
- 500-1000 kDa [2151]
- 1-2 MDa [899]
- 2-5 MDa [873]
- 5-10 MDa [135]
- > 10 MDa [70]
Release Date
- 2026 [30]
- 2025 [4607]
- 2024 [3845]
- 2023 [2847]
- 2022 [2349]
- 2021 [1756]
- 2020 [1453]
- 2019 [833]
- 2018 [550]
- 2017 [322]
- 2016 [379]
- 2015 [195]
- 2014 [121]
- 2013 [128]
- 2012 [91]
- 2011 [68]
- 2010 [46]
- 2009 [36]
- 2008 [9]
- 2007 [29]
- 2006 [21]
- 2005 [4]
- 2004 [10]
- 2003 [7]
Author by name
- Ward AB [1195]
- Wang Y [787]
- Zhang Y [737]
- Wang X [603]
- Zhang Z [565]
- Liu Y [564]
- Zhang X [550]
- Li Y [508]
- Zhang L [467]
- Li J [433]
- Li X [419]
- Ozorowski G [410]
- Gao Y [408]
- Wang J [402]
- Li Z [381]
- Liu L [373]
- Han J [369]
- Li H [368]
- Wang L [364]
- Chen Y [360]
- Wang H [354]
- Burton DR [351]
- Cottrell CA [349]
- Torres JL [348]
- Zhang J [337]
- Wang C [332]
- Li S [326]
- Shi Y [322]
- Chen X [317]
- Wilson IA [317]
- Richey ST [315]
- Jiang Y [308]
- Xu Y [308]
- Sanders RW [307]
- Wang Q [294]
- Chen Z [288]
- Zhang S [276]
- Zhang H [268]
- Yuan Q [261]
- Yu X [254]
- Zhang C [253]
- Zhou Q [252]
- Liu C [250]
- Skiniotis G [250]
- Sewall LM [243]
- Chen J [240]
- Zhu Y [239]
- Wang S [238]
- Li W [235]
- Kwong PD [233]
- Kobilka BK [228]
- Liu X [228]
- Xu HE [228]
- Li T [227]
- Yang Y [227]
- Lu Y [226]
- Zhao Y [219]
- Liu Z [217]
- Zhang B [217]
- Cramer P [216]
- Yang YR [215]
- Huang Y [214]
- Montefiori DC [214]
- Zhu X [213]
- Liu J [210]
- Liu S [210]
- Marks AR [209]
- Van Gils Mj [208]
- Turner HL [206]
- Lee WH [205]
- Gao H [204]
- Silvestri G [201]
- Zhou Y [201]
- Crispin M [200]
- Zheng Q [199]
- Jackson AM [196]
- Rodriguez AJ [196]
- Yang X [196]
- Seven AB [193]
- Yu J [193]
- Wang Z [190]
- Papasergi-scott MM [189]
- Gmeiner P [188]
- Panova O [188]
- Carnathan DG [187]
- Crotty S [187]
- Xu J [187]
- He F [186]
- Nureki O [184]
- Copps J [183]
- Miotto MC [183]
- Beckmann R [182]
- Schief WR [178]
- Krammer F [177]
- Wu Y [176]
- Li L [175]
- Moore JP [175]
- Zhao J [174]
- Allen JD [172]
- Hilger D [172]
Author by ORCID
- Ward AB [618]
- Torres JL [300]
- Ozorowski G [261]
- Skiniotis G [240]
- Cottrell CA [221]
- Kobilka BK [214]
- Crispin M [200]
- Kwong PD [197]
- Burton DR [187]
- Gmeiner P [185]
- He F [182]
- Gao Y [181]
- Papasergi-scott MM [181]
- Allen JD [172]
- Hilger D [166]
- Panova O [162]
- Batebi H [160]
- Perez-hernandez G [160]
- Hildebrand PW [160]
- Van Gils Mj [159]
- Miotto MC [153]
- Xu HE [142]
- Copps J [138]
- Li H [135]
- Sanders RW [135]
- Kanekiyo M [134]
- Crotty S [132]
- Weninger G [126]
- Raunser S [125]
- Perrett HR [123]
- Hirst J [121]
- Nureki O [121]
- Beckmann R [121]
- Han J [118]
- Schmitz AJ [117]
- Gao N [112]
- Krammer F [112]
- Crowe Jr Je [111]
- Sewall LM [111]
- Schief WR [107]
- Wilson IA [106]
- Lee WH [105]
- Cheng Y [103]
- Wronska A [102]
- Zheng Q [100]
- Zhang Y [100]
- Steyaert J [99]
- Yuan M [98]
- Gao GF [98]
- Urlaub H [97]
- Yang W [96]
- Subramaniam S [95]
- Georgeson E [94]
- Irvine DJ [94]
- Rubinstein JL [94]
- Yang D [91]
- Pardon E [90]
- Wang MW [89]
- King NP [89]
- Wang X [89]
- Bridges HR [86]
- Yin Z [86]
- Yang M [86]
- Sok D [86]
- Hummer G [85]
- Sun JP [85]
- Dridi H [83]
- Hurley JH [82]
- Blaza JN [82]
- Cramer P [82]
- Nogal B [81]
- Xu Y [81]
- Labranche C [81]
- Xiao P [81]
- Silvestri G [80]
- Aricescu AR [79]
- Barford D [78]
- Venugopal H [77]
- Leon AN [77]
- Chung I [77]
- Zhou Q [77]
- Van Schooten J [76]
- Wilson DN [75]
- Gu J [74]
- Kosinski J [74]
- Sano FK [74]
- Chopde A [74]
- Bjorkman PJ [73]
- Bai XC [73]
- Moore JP [73]
- Zhao M [72]
- Kravchuk V [72]
- Sazanov L [72]
- Marks AR [72]
- Turner JS [72]
- Muller CW [71]
- Wootten D [71]
- Malinauskas T [70]
- Yan R [70]
- Xia N [70]
Journal
- NAT COMMUN [3450]
- NATURE [2177]
- TO BE PUBLISHED [1760]
- NAT STRUCT MOL BIOL [1212]
- SCIENCE [1204]
- CELL [984]
- PNAS [943]
- MOL CELL [938]
- BIORXIV [818]
- SCI ADV [672]
- CELL REP [619]
- ELIFE [549]
- NUCLEIC ACIDS RES [349]
- STRUCTURE [332]
- CELL RES [327]
- EMBO J [241]
- CELL DISCOV [238]
- PLOS PATHOG [193]
- NAT CHEM BIOL [190]
- IMMUNITY [175]
- COMMUN BIOL [170]
- J MOL BIOL [158]
- J VIROL [153]
- J BIOL CHEM [148]
- MBIO [114]
- ACTA CRYSTALLOGR D STRUCT BIOL [113]
- NAT MICROBIOL [104]
- CELL HOST MICROBE [99]
- NPJ VACCINES [97]
- SCI TRANSL MED [83]
- PROTEIN CELL [71]
- EMBO REP [70]
- PLOS BIOL [66]
- J AM CHEM SOC [62]
- NAT PLANTS [61]
- SCI IMMUNOL [61]
- J STRUCT BIOL [45]
- SCI REP [43]
- ISCIENCE [41]
- SIGNAL TRANSDUCT TARGET THER [41]
- J CLIN INV [40]
- J MED CHEM [37]
- EBIOMEDICINE [35]
- J CELL BIOL [34]
- PLOS ONE [32]
- ADV SCI [31]
- INT J BIOL MACROMOL [31]
- IUCRJ [29]
- PROTEIN SCI [27]
- PNAS NEXUS [25]
- NAT IMMUNOL [24]
- BIOCHEMISTRY [23]
- BLOOD [23]
- NAT METHODS [23]
- RES SQ [23]
- EMERG MICROBES INFECT [22]
- NEURON [21]
- DEV CELL [19]
- VIRUSES [19]
- BIOCHEM BIOPHYS RES COMMUN [18]
- LIFE SCI ALLIANCE [18]
- ANGEW CHEM INT ED ENGL [17]
- CELL REP MED [17]
- NAT CATAL [17]
- NAT CELL BIOL [17]
- BIOCHEM J [16]
- FRONT IMMUNOL [16]
- J EXP MED [16]
- J STRUCT BIOL X [16]
- NAT BIOMED ENG [15]
- GENES DEV [14]
- PLANT CELL [14]
- INT J MOL SCI [13]
- MEDCOMM (2020) [12]
- NAT BIOTECHNOL [12]
- NPJ VIRUSES [12]
- ACTA PHARMACOL.SIN. [11]
- HLIFE [11]
- MOL MICROBIOL [11]
- MOL PLANT [11]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [10]
- FEBS J [10]
- J HEPATOL [10]
- NAT CHEM [10]
- NATL SCI REV [10]
- CELL CHEM BIOL [9]
- MSPHERE [9]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [8]
- CURR BIOL [8]
- J GEN PHYSIOL [8]
- MOL BIOL CELL [8]
- PLANT COMMUN. [8]
- RNA [8]
- CELL METAB. [7]
- J LIPID RES [7]
- NAT MED [7]
- PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES USA [7]
- SCI BULL (BEIJING) [7]
- SCI SIGNAL [7]
- ACS INFECT DIS. [6]
Software
- CRYOSPARC [5197]
- RELION [5033]
- CTFFIND [746]
- GCTF [434]
- CISTEM [152]
- SPIDER [145]
- COOT [144]
- CHIMERA [134]
- EMAN2 [107]
- FREALIGN [101]
- WARP [96]
- IMOD [73]
- EMAN [66]
- SPHIRE [66]
- NOVASTA [52]
- IMAGIC [50]
- PHENIX [50]
- UCSF CHIMERA [47]
- UCSF CHIMERAX [47]
- DYNAMO [41]
- SPARX [36]
- PEET [22]
- TOM [21]
- XMIPP [19]
- AV3 [16]
- IMAGIC, CUSTOM, SPIDER [16]
- NOVACTF [16]
- EMAN2, RELION [15]
- SIMPLE [15]
- PYTOM [14]
- SPIDER, RELION [14]
- TOMOCTF [14]
- MDFF [13]
- SITUS [13]
- CRYOLO [12]
- IMAGIC, SPIDER [12]
- JSPR [12]
- CTFFIND3, RELION [11]
- SIGNATURE, CTFFIND3, SPIDER, SPARX [11]
- CTFFIND3 [10]
- EM3DR2 [10]
- EMAN2, SPARX [10]
- CHIMERA, MDFF [9]
- EMCLARITY [9]
- EMFIT [9]
- ISOLDE [9]
- AUTO3DEM [8]
- CTFFIND4 [8]
- RELION, FREALIGN [8]
- SPIDER, EMAN [8]
- SPIDER, EMAN2 [8]
- CTFIND3 [7]
- EMAN2, IMAGIC, RELION-1.3 [7]
- IMAGIC-5, SPIDER [7]
- IMOD, TOM, AV3 [7]
- O [7]
- SPARX/EMAN2 [7]
- AMIRA [6]
- APPION [6]
- CHIMERA, COOT [6]
- CHIMERA, PHENIX [6]
- EMAN2, FREALIGN [6]
- EMAN2, SPIDER, BESPOKE-2D-ALIGNMENT, BESPOKE-X-AND-Y-SHIFTING [6]
- IPET [6]
- MPSA [6]
- MRC, IMAGIC, SPIDER [6]
- SPIDER, PACKAGE [6]
- SPIDER, TOM_TOOLBOX [6]
- TOM TOOLBOX [6]
- UNBLUR, CTFFIND4, FREALIGN [6]
- CHIMERA, REFMAC [5]
- CHIMERA, ROSETTA, PHENIX, COOT [5]
- CHIMERA, SITUS [5]
- COMET [5]
- COOT, SPDBV, REFMAC5 [5]
- CTFFIND3, EMAN2, RELION [5]
- EMAN, EMAN2, XMIPP [5]
- EMAN2, RELION1.2 [5]
- EMAN2/SPARX [5]
- GAP [5]
- IHRSR [5]
- IMAGIC, EMAN, FREALIGN, SPIDER, GAP [5]
- IMOD, TOM, PACKAGE, MATLAB [5]
- J3DR [5]
- MATLAB [5]
- SPIDER, SPARX [5]
- STOPGAP [5]
- BSOFT [4]
- CHIMERA, EMFIT, COOT [4]
- CTFPHASEFLIP [4]
- DIREX [4]
- EMAN, SPIDER [4]
- EMAN2, XMIPP, IMAGIC [4]
- FLEX-EM [4]
- IMAGIC V [4]
- IMAGIC-5 [4]
- JSPR, EMAN, EMAN2 [4]
- SCIPION [4]
- XMIPP, EMAN2, SPARX [4]
- CHIMERA, COOT, REFMAC [3]
Microscope
- FEI TITAN KRIOS [11505]
- TFS KRIOS [3702]
- FEI TALOS ARCTICA [1093]
- TFS GLACIOS [629]
- FEI TECNAI F20 [444]
- FEI TECNAI SPIRIT [443]
- FEI POLARA 300 [322]
- FEI TITAN [234]
- FEI TECNAI F30 [204]
- JEOL CRYO ARM 300 [203]
- FEI TECNAI ARCTICA [131]
- FEI TECNAI 20 [116]
- FEI TECNAI 12 [102]
- TFS TALOS [93]
- FEI/PHILIPS CM200FEG [77]
- TFS TALOS L120C [50]
- JEOL 2100F [47]
- TFS TALOS F200C [43]
- FEI/PHILIPS EM420 [41]
- JEOL 2010F [39]
- JEOL 3200FSC [39]
- JEOL 2100 [27]
- JEOL 2200FS [19]
- JEOL 3200FS [19]
- FEI/PHILIPS CM300FEG/T [12]
- JEOL 1200EXII [12]
- JEOL CRYO ARM 200 [12]
- TFS TITAN THEMIS [12]
- JEOL 1230 [11]
- JEOL 1400 [10]
- FEI/PHILIPS CM300FEG/HE [8]
- ZEISS LIBRA120PLUS [8]
- FEI MORGAGNI [6]
- FEI/PHILIPS CM120T [5]
- JEOL 3100FFC [5]
- OTHER [5]
- FEI TECNAI 10 [4]
- FEI/PHILIPS CM200FEG/ST [3]
- FEI/PHILIPS CM200FEG/UT [3]
- JEOL 2200FSC [3]
- JEOL 3000SFF [3]
- FEI/PHILIPS CM300FEG/ST [2]
- JEOL 1010 [2]
- JEOL 1200EX [2]
- JEOL 4000EX [2]
- JEOL KYOTO-3000SFF [2]
- FEI/PHILIPS CM12 [1]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- JEOL 100CX [1]
- JEOL 1200 [1]
- JEOL 1400/HR YPS FEG [1]
- JEOL 2010 [1]
- JEOL 2010HC [1]
- SHUIMU TOTEM 300S [1]
Electron Source
- FIELD EMISSION GUN [18871]
- LAB6 [677]
- OTHER [148]
- TUNGSTEN HAIRPIN [41]
Film or detector model
- GATAN K3 6K X 4K [5501]
- GATAN K3 BIOQUANTUM 6K X 4K [4099]
- GATAN K2 SUMMIT 4K X 4K [3831]
- FEI FALCON IV 4K X 4K [1664]
- FEI FALCON III 4K X 4K [1028]
- GATAN K2 QUANTUM 4K X 4K [653]
- FEI FALCON II 4K X 4K [476]
- TVIPS TEMCAM-F416 4K X 4K [432]
- TFS FALCON 4I 4K X 4K [344]
- FEI EAGLE 4K X 4K [289]
- FEI CETA 4K X 4K [226]
- KODAK SO-163 FILM [210]
- GATAN ULTRASCAN 4000 4K X 4K [186]
- OTHER [154]
- GATAN K3 BIOCONTINUUM 6K X 4K [149]
- GATAN K2 BASE 4K X 4K [87]
- GATAN K2 4K X 4K [59]
- TVIPS TEMCAM-F415 4K X 4K [43]
- GENERIC CCD [30]
- GATAN ULTRASCAN 1000 2K X 2K [29]
- GENERIC TVIPS 4K X 4K [28]
- GENERIC GATAN 4K X 4K [26]
- DIRECT ELECTRON DE-20 5K X 3K [24]
- FEI EAGLE 2K X 2K [24]
- GENERIC GATAN [19]
- TVIPS TEMCAM-F816 8K X 8K [15]
- DIRECT ELECTRON DE-16 4K X 4K [12]
- DIRECT ELECTRON DE-64 8K X 8K [12]
- FEI FALCON I 4K X 4K [12]
- GATAN K2 IS 4K X 4K [12]
- DIRECT ELECTRON APOLLO 4K X 4K [10]
- DIRECT ELECTRON DE-10 5K X 4K [9]
- GATAN MULTISCAN [9]
- GENERIC FILM [6]
- TVIPS TEMCAM-F224 2K X 2K [6]
- DIRECT ELECTRON DE-12 4K X 3K [5]
- GATAN ALPINE 2.3K X 3.2K [3]
- GENERIC GATAN 2K X 2K [3]
- GENERIC TVIPS [3]
- GENERIC IMAGE PLATES [2]
- KODAK 4489 FILM [2]
- DECTRIS SINGLA 1K X 1K [1]
- GATAN ORIUS SC200 2K X 2K [1]
- GATAN ORIUS SC600 2.7K X 2.7K [1]
- GENERIC TVIPS 2K X 2K [1]
External links
- UniProt [13758]
- PDB [13165]
- PDBe-Kb [12778]
- AlphaFold DB [12477]
- Pfam [11372]
- Gene Ontology [10626]
- InterPro [10057]
- ChEBI [8650]
- ChEMBL [8049]
- DrugBank [6920]
- Complex Portal [4692]
- EMPIAR [1376]
- SCOP2 [292]
- CATH [185]