Filter By
Current Database
- EMDB [54621]
Current status
- REL [54621]
Sample type
- Complex [46348]
- Protein [37622]
- Ligand [21850]
- RNA [5195]
- DNA [3589]
- Virus [3524]
- Cellular component [3029]
- Sample [1661]
- Cell [1018]
- Tissue [276]
- Other [262]
- Em label [1]
Organism
- Homo sapiens [20466]
- Synthetic construct [3944]
- Mus musculus [3536]
- Escherichia coli [3132]
- Severe acute respiratory syndrome coronavirus [2566]
- Saccharomyces cerevisiae [2354]
- Rattus norvegicus [1173]
- Escherichia coli [1153]
- Bos taurus [1067]
- Human immunodeficiency virus 1 [1021]
- Oryctolagus cuniculus [958]
- Sus scrofa [875]
- Saccharomyces cerevisiae [821]
- Lama glama [650]
- Xenopus laevis [631]
- Arabidopsis thaliana [581]
- Macaca mulatta [459]
- Chlamydomonas reinhardtii [370]
- Drosophila melanogaster [330]
- Mycolicibacterium smegmatis [322]
- Influenza a virus [320]
- Mycobacterium tuberculosis [251]
- Bacillus subtilis [248]
- Gallus gallus [221]
- Escherichia coli [199]
- Pseudomonas aeruginosa [189]
- Vicugna pacos [186]
- Tetrahymena thermophila [186]
- Staphylococcus aureus [178]
- Danio rerio [168]
- Thermus thermophilus [167]
- Caenorhabditis elegans [167]
- Enterobacteria phage m13 [166]
- Chaetomium thermophilum [163]
- Mycobacterium tuberculosis [143]
- Saccharomyces cerevisiae [137]
- Chaetomium thermophilum [136]
- Leishmania tarentolae [136]
- Ovis aries [132]
- Geobacillus stearothermophilus [130]
- Bacillus subtilis [126]
- Enterobacteria phage t4 [119]
- Plasmodium falciparum [118]
- Aequorea victoria [118]
- Salmonella enterica [115]
- Bacillus sp. (strain ps3) [113]
- Synechocystis sp. pcc 6803 [112]
- Escherichia virus t7 [111]
- Pseudomonas aeruginosa [104]
- Mycolicibacterium smegmatis [102]
- Streptococcus pyogenes [101]
- Schizosaccharomyces pombe [101]
- Severe acute respiratory syndrome coronavirus [100]
- Vibrio cholerae [97]
- Trypanosoma brucei [91]
- Plasmodium falciparum [91]
- Mycoplasma pneumoniae [87]
- African swine fever virus [86]
- Spinacia oleracea [80]
- Clostridioides difficile [77]
- Hepatitis b virus [73]
- Escherichia coli [73]
- Monkeypox virus [71]
- Human cytomegalovirus [71]
- Eastern equine encephalitis virus [71]
- Dna molecule [71]
- Macaca fascicularis [70]
- Cricetulus griseus [69]
- Human herpesvirus 1 [69]
- Schizosaccharomyces pombe [69]
- Salmonella enterica [69]
- Middle east respiratory syndrome-related coronavirus [68]
- Chikungunya virus [68]
- Thermus thermophilus [67]
- Klebsiella pneumoniae [67]
- (no species) [65]
- Adeno-associated virus [63]
- Pseudomonas phage phi6 [62]
- Human immunodeficiency virus [62]
- Saccharomyces cerevisiae [62]
- Enterobacteria phage t4 [60]
- Enterovirus d [60]
- Polytomella sp. pringsheim 198.80 [59]
- Enterovirus a [59]
- Dengue virus [58]
- Amanita phalloides [56]
- Lassa mammarenavirus [55]
- Clostridium botulinum [55]
- Neurospora crassa [55]
- Trypanosoma brucei [55]
- Escherichia phage lambda [54]
- Acinetobacter baumannii [54]
- (no species) [54]
- Equus caballus [54]
- Epstein-barr virus (strain gd1) [53]
- Thermoplasma acidophilum [53]
- Legionella pneumophila [53]
- Flavobacterium johnsoniae [53]
- Severe acute respiratory syndrome coronavirus [50]
- Oryza sativa [50]
EM Method
- Single-particle [48571]
- Subtomogram averaging [2732]
- Helical reconstruction [2364]
- Tomography [954]
Resolution
- < 2Å [411]
- ≥ 2Å and < 3Å [12419]
- ≥ 3Å and < 4Å [24082]
- ≥ 4Å and < 5Å [5526]
- ≥ 5Å and < 6Å [1304]
- ≥ 6Å and < 8Å [2628]
- ≥ 8Å and < 12Å [2152]
- ≥ 12Å and < 16Å [1123]
- ≥ 16Å and < 20Å [892]
- ≥ 20Å and < 30Å [2471]
- ≥ 30Å [1609]
Model molecular weight
- 0-50 kDa [623]
- 50-100 kDa [2273]
- 100-250 kDa [10964]
- 250-500 kDa [8823]
- 500-1000 kDa [4953]
- 1-2 MDa [2270]
- 2-5 MDa [2339]
- 5-10 MDa [632]
- > 10 MDa [445]
Release Date
- 2026 [6299]
- 2025 [11358]
- 2024 [8892]
- 2023 [7270]
- 2022 [5805]
- 2021 [4239]
- 2020 [3611]
- 2019 [2271]
- 2018 [1690]
- 2017 [958]
- 2016 [572]
- 2015 [6]
- 2014 [36]
- 2013 [395]
- 2012 [338]
- 2011 [213]
- 2010 [165]
- 2009 [151]
- 2008 [46]
- 2007 [102]
- 2006 [108]
- 2005 [38]
- 2004 [26]
- 2003 [31]
- 2002 [1]
Author by name
- Zhang Y [1840]
- Wang Y [1736]
- Ward AB [1688]
- Liu J [1675]
- Zhang X [1564]
- Wang X [1501]
- Li Y [1324]
- Liu Y [1276]
- Wang J [1193]
- Zhang Z [1111]
- Li X [1105]
- Li S [1085]
- Li Z [1063]
- Zhang J [967]
- Li J [963]
- Ren G [956]
- Zhang L [938]
- Zhang M [891]
- Chen Y [889]
- Wang L [872]
- Gao Y [835]
- Wang H [817]
- Wang S [811]
- Liu S [758]
- Zhang S [751]
- Li H [750]
- Chen Z [720]
- Liu C [694]
- Chen X [693]
- Wang C [663]
- Zhu Y [651]
- Zhang H [647]
- Liu Z [643]
- Liu H [639]
- Wang Q [621]
- Yang Y [621]
- Shi Y [617]
- Liu L [609]
- Zhang K [603]
- Li D [600]
- Xu Y [600]
- Liu X [587]
- Chen J [585]
- Wu H [579]
- Jiang Y [577]
- Zhou ZH [575]
- Wang Z [562]
- Beckmann R [543]
- Zhao Y [538]
- Han J [529]
- Cheng J [515]
- Yang X [515]
- Cottrell CA [510]
- Huang Y [509]
- Zhou L [500]
- Zhang P [484]
- Burton DR [478]
- Xu J [470]
- Xu C [457]
- Ozorowski G [454]
- Wu C [447]
- Wilson IA [446]
- Zhang C [436]
- Hu Z [434]
- Yu X [434]
- Wu J [432]
- Zhang W [430]
- Zhao J [428]
- Chen L [426]
- Wang W [426]
- Li W [421]
- Lu Y [419]
- Wang P [419]
- Sun Y [417]
- Li L [416]
- Zhou Y [410]
- Torres JL [409]
- Wang M [408]
- Sewall LM [405]
- Zhang R [405]
- Zhang Q [404]
- Zhou J [401]
- Zhao X [399]
- Yang F [398]
- Hu Y [389]
- Li T [389]
- Zhu X [388]
- Li M [387]
- Wu Y [384]
- Yuan Q [383]
- Zhang B [381]
- Sanders RW [380]
- Yu Z [379]
- Berninghausen O [375]
- Kotecha A [375]
- Yu J [375]
- Chiu W [370]
- Wang F [369]
- Kwong PD [367]
- Rao Z [363]
Author by ORCID
- Ren G [933]
- Ward AB [883]
- Liu J [816]
- Cottrell CA [504]
- Zhou ZH [419]
- Kotecha A [348]
- Torres JL [338]
- Brown A [337]
- Chiu W [330]
- Beckmann R [321]
- Klinge S [312]
- Skiniotis G [306]
- Kwong PD [292]
- Ozorowski G [280]
- Cheng Y [279]
- Rubinstein JL [268]
- Lyumkis D [253]
- Crispin M [249]
- Gao N [248]
- Kobilka BK [242]
- Xu HE [239]
- Raunser S [227]
- Scheres SHW [227]
- Hummer G [225]
- Nureki O [219]
- Plevka P [218]
- Andersen ES [217]
- Zeng J [211]
- Baker D [210]
- Schulman BA [210]
- Li H [209]
- Geary C [209]
- Gao GF [207]
- Zheng Q [206]
- Thoms M [205]
- Gao Y [205]
- Allen JD [205]
- Papasergi-scott MM [201]
- Edwards RJ [201]
- Amunts A [200]
- Burton DR [199]
- Kanekiyo M [198]
- Zhang P [198]
- Copps J [194]
- Schief WR [192]
- Gmeiner P [192]
- King NP [190]
- Cheng J [190]
- Fuzik T [187]
- Carnathan DG [186]
- He F [185]
- Zhang K [184]
- Han J [183]
- Kishikawa JI [182]
- Williamson JR [180]
- Cramer P [179]
- Van Gils Mj [179]
- Beck M [178]
- Vanden Broeck A [178]
- Hurt E [176]
- Zhang M [173]
- Huiskonen JT [172]
- Du J [172]
- Zhang K [170]
- Lei D [169]
- Hilger D [167]
- Borgnia MJ [167]
- Greber BJ [167]
- Kuhlbrandt W [167]
- Lander GC [167]
- Ranson NA [166]
- Henderson R [166]
- Denk T [164]
- Itoh Y [162]
- Panova O [162]
- Park YJ [162]
- Batebi H [160]
- Perez-hernandez G [160]
- Hildebrand PW [160]
- Wilson DN [160]
- Crowe Jr Je [159]
- Wang X [159]
- Sobolevsky AI [158]
- Bai XC [158]
- Rappsilber J [157]
- Stahlberg H [157]
- Sanders RW [157]
- Gui M [154]
- Zhang X [154]
- Liu J [154]
- Miotto MC [153]
- Chai P [153]
- Wilson IA [153]
- Zhang R [151]
- Veesler D [149]
- Goedert M [148]
- Xia N [148]
- Briggs JAG [148]
- Mclellan JS [148]
- Xia X [147]
Journal
- NAT COMMUN [10207]
- TO BE PUBLISHED [5969]
- NATURE [4691]
- NAT STRUCT MOL BIOL [2982]
- PNAS [2894]
- BIORXIV [2660]
- SCIENCE [2562]
- CELL [2136]
- SCI ADV [1890]
- MOL CELL [1757]
- ELIFE [1441]
- STRUCTURE [1293]
- CELL REP [1236]
- NUCLEIC ACIDS RES [1115]
- EMBO J [755]
- CELL RES [679]
- COMMUN BIOL [673]
- J MOL BIOL [618]
- J VIROL [562]
- PLOS PATHOG [495]
- J BIOL CHEM [494]
- NAT CHEM BIOL [494]
- CELL DISCOV [457]
- NAT MICROBIOL [407]
- ACTA CRYSTALLOGR D STRUCT BIOL [398]
- SCI REP [293]
- NAT METHODS [271]
- MBIO [260]
- J STRUCT BIOL [247]
- NAT PLANTS [226]
- IMMUNITY [223]
- EMBO REP [196]
- PLOS BIOL [196]
- PROTEIN SCI [193]
- J AM CHEM SOC [191]
- CELL HOST MICROBE [190]
- PROTEIN CELL [167]
- J CELL BIOL [157]
- SCI TRANSL MED [148]
- NEURON [128]
- NPJ VACCINES [125]
- VIRUSES [125]
- IUCRJ [118]
- INT J MOL SCI [101]
- ISCIENCE [101]
- PLOS ONE [97]
- LIFE SCI ALLIANCE [95]
- J MED CHEM [85]
- PNAS NEXUS [84]
- ADV SCI [78]
- SIGNAL TRANSDUCT TARGET THER [78]
- J STRUCT BIOL X [75]
- COMMUN CHEM [74]
- RES SQ [74]
- SCI IMMUNOL [73]
- BIOCHEMISTRY [72]
- ACS NANO [68]
- CURR BIOL [67]
- FEBS J [59]
- BLOOD [58]
- INT J BIOL MACROMOL [57]
- ANGEW CHEM INT ED ENGL [55]
- BIOCHEM BIOPHYS RES COMMUN [55]
- J CLIN INV [54]
- DEV CELL [53]
- ACTA NEUROPATHOL [51]
- MOL BIOL CELL [51]
- RNA [49]
- BIOMOLECULES [48]
- NAT CATAL [46]
- NAT NANOTECHNOL [45]
- FRONT MOL BIOSCI [42]
- MOL PLANT [41]
- PLANT CELL [39]
- VIROLOGY [39]
- EBIOMEDICINE [38]
- CELL REP METHODS [36]
- EMERG MICROBES INFECT [35]
- GENES DEV [34]
- PLANT COMMUN. [34]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [33]
- CELL REP MED [33]
- ACS CHEM BIOL [31]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
- FEBS LETT [31]
- NAT CHEM [31]
- ACTA PHARMACOL.SIN. [30]
- FRONT IMMUNOL [30]
- NAT IMMUNOL [30]
- BIOCHEM J [29]
- BIOCHIM BIOPHYS ACTA BIOENERG [29]
- J BACTERIOL [28]
- NAT NEUROSCI [28]
- J EXP MED [27]
- NAT CELL BIOL [27]
- NATL SCI REV [27]
- SCI SIGNAL [25]
- J GEN VIROL [24]
- ACS CENT SCI [23]
- CELL CHEM BIOL [23]
Software
- CRYOSPARC [15694]
- RELION [14151]
- CTFFIND [2534]
- GCTF [1637]
- WARP [582]
- TOMOCTF [524]
- IMOD [477]
- CISTEM [459]
- IPET [440]
- SPIDER [407]
- FREALIGN [395]
- COOT [371]
- DYNAMO [312]
- EMAN [307]
- EMAN2 [300]
- UCSF CHIMERAX [261]
- PHENIX [260]
- CHIMERA [193]
- PEET [191]
- UCSF CHIMERA [162]
- CRYOLO [139]
- JSPR [138]
- PYTOM [137]
- SPHIRE [114]
- MATLAB [109]
- XMIPP [108]
- IMAGIC [99]
- AUTO3DEM [94]
- AV3 [83]
- EMCLARITY [76]
- NOVACTF [72]
- TOM TOOLBOX [64]
- CTFFIND3 [60]
- NOVASTA [55]
- STOPGAP [54]
- CTFPHASEFLIP [49]
- SPARX [49]
- M [48]
- SITUS [41]
- TOM [41]
- ISOLDE [40]
- CRYODRGN [39]
- URO [37]
- SIMPLE [35]
- BSOFT [32]
- EMFIT [31]
- MDFF [31]
- SCIPION [31]
- APPION [30]
- EM3DR2 [28]
- MPSA [25]
- SUBTOM [25]
- CTFFIND4 [24]
- J3DR [22]
- SPIDER, APPION [22]
- O [21]
- CTFTILT [20]
- I3 [20]
- IHRSR [20]
- IMAGIC, SPIDER [20]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- JALIGN [20]
- EMAN1 [19]
- FREALIX [19]
- SPIDER, FREALIGN [17]
- IMAGIC, CUSTOM, SPIDER [16]
- MULTI-PATH SA [16]
- SPIDER, IMAGIC [16]
- APPION, SPIDER, EMAN [15]
- EMAN2, SPARX [15]
- ETOMO [15]
- IMIRS [15]
- EMAN1, EMAN2 [13]
- EMREADY [13]
- PHOELIX, SUPRIM [13]
- SPRING [13]
- EMAN, SPIDER [12]
- SPARX/EMAN2 [12]
- TOPAZ [12]
- AMIRA [11]
- GAP [11]
- IMAGIC-5, SPIDER [11]
- MOTIONCORR2 [11]
- SPIDER PACKAGE [11]
- CHIMERA, SITUS [10]
- EMAN, XMIPP [10]
- FOCUS [10]
- IMOD, BSOFT [10]
- SPIDER, EMAN [10]
- AMIRAFPM [9]
- IMOD, RAPTOR, PROTOMO [9]
- EMAN, FREALIGN [8]
- EMIRA [8]
- EMPFT EM3DR [8]
- IMAGIC, FREALIGN [8]
- MOLREP, CHIMERA [8]
- MRC [8]
- SPIDER, PACKAGE [8]
- CTFIND3 [7]
- DIREX [7]
Microscope
- FEI TITAN KRIOS [28771]
- TFS KRIOS [13695]
- FEI TALOS ARCTICA [2812]
- TFS GLACIOS [1828]
- FEI TECNAI F20 [1107]
- FEI POLARA 300 [901]
- JEOL CRYO ARM 300 [693]
- FEI TECNAI SPIRIT [676]
- FEI TECNAI F30 [640]
- FEI TITAN [558]
- ZEISS LIBRA120PLUS [454]
- FEI TECNAI ARCTICA [399]
- FEI TECNAI 20 [242]
- TFS TALOS [216]
- FEI TECNAI 12 [183]
- FEI/PHILIPS CM200FEG [175]
- JEOL 3200FSC [138]
- JEOL 2200FS [128]
- JEOL CRYO ARM 200 [94]
- FEI/PHILIPS CM300FEG/T [89]
- JEOL 2100F [77]
- TFS TALOS L120C [75]
- JEOL 2010F [70]
- TFS TALOS F200C [69]
- FEI/PHILIPS EM420 [48]
- TFS TITAN THEMIS [44]
- JEOL 2100 [41]
- FEI MORGAGNI [36]
- JEOL 3200FS [35]
- JEOL 1230 [29]
- FEI/PHILIPS CM120T [27]
- JEOL 3100FFC [26]
- TFS TUNDRA [23]
- JEOL 3000SFF [21]
- JEOL 1200EXII [19]
- FEI/PHILIPS CM200T [18]
- JEOL 4000 [17]
- FEI TECNAI 10 [15]
- FEI/PHILIPS CM200FEG/ST [14]
- JEOL 4000EX [14]
- FEI/PHILIPS CM300FEG/HE [13]
- JEOL 1400 [13]
- JEOL 1200EX [12]
- JEOL 1400/HR YPS FEG [11]
- FEI/PHILIPS CM12 [8]
- JEOL 100CX [7]
- JEOL 2000EX [6]
- FEI/PHILIPS CM200FEG/UT [5]
- FEI/PHILIPS CM300FEG/ST [5]
- JEOL 2010 [5]
- JEOL 2200FSC [5]
- JEOL 3100FEF [5]
- FEI TECNAI SPHERA [4]
- FEI/PHILIPS CM10 [4]
- JEOL KYOTO-3000SFF [4]
- OTHER [4]
- HITACHI EF2000 [3]
- JEOL 1000EES [3]
- JEOL 1010 [3]
- JEOL 1200 [3]
- JEOL 2010HT [2]
- JEOL 2010UHR [2]
- SHUIMU TOTEM 300S [2]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- HITACHI H-9500SD [1]
- HITACHI H7600 [1]
- JEOL 2000EXII [1]
- JEOL 2010HC [1]
- JEOL 2011 [1]
- ZEISS LEO912 [1]
Electron Source
- FIELD EMISSION GUN [52626]
- LAB6 [1564]
- OTHER [293]
- TUNGSTEN HAIRPIN [139]
Film or detector model
- GATAN K3 6K X 4K [14777]
- GATAN K3 BIOQUANTUM 6K X 4K [11458]
- GATAN K2 SUMMIT 4K X 4K [10195]
- FEI FALCON IV 4K X 4K [5651]
- FEI FALCON III 4K X 4K [3013]
- GATAN K2 QUANTUM 4K X 4K [1838]
- TFS FALCON 4I 4K X 4K [1354]
- FEI FALCON II 4K X 4K [1172]
- GATAN ULTRASCAN 4000 4K X 4K [880]
- KODAK SO-163 FILM [781]
- GATAN K3 BIOCONTINUUM 6K X 4K [638]
- TVIPS TEMCAM-F416 4K X 4K [540]
- FEI EAGLE 4K X 4K [424]
- OTHER [330]
- FEI CETA 4K X 4K [288]
- GATAN K2 BASE 4K X 4K [208]
- DIRECT ELECTRON DE-20 5K X 3K [120]
- GENERIC GATAN 4K X 4K [90]
- GATAN ULTRASCAN 1000 2K X 2K [86]
- GENERIC CCD [69]
- FEI FALCON I 4K X 4K [64]
- TVIPS TEMCAM-F415 4K X 4K [60]
- GENERIC TVIPS 4K X 4K [57]
- FEI EAGLE 2K X 2K [52]
- DIRECT ELECTRON DE-64 8K X 8K [48]
- GATAN K2 IS 4K X 4K [41]
- DIRECT ELECTRON DE-16 4K X 4K [37]
- GENERIC GATAN [35]
- DIRECT ELECTRON APOLLO 4K X 4K [34]
- TVIPS TEMCAM-F816 8K X 8K [30]
- GATAN MULTISCAN [22]
- DIRECT ELECTRON DE-10 5K X 4K [20]
- DIRECT ELECTRON DE-12 4K X 3K [20]
- TVIPS TEMCAM-F216 2K X 2K [17]
- TVIPS TEMCAM-F224 2K X 2K [14]
- DECTRIS SINGLA 1K X 1K [12]
- GENERIC FILM [11]
- KODAK 4489 FILM [11]
- AGFA SCIENTA FILM [9]
- GENERIC TVIPS [9]
- GATAN K2 4K X 4K [7]
- GENERIC GATAN 2K X 2K [7]
- DECTRIS ELA 1K X 0.5K [6]
- GATAN ALPINE 2.3K X 3.2K [5]
- GATAN ORIUS SC200 2K X 2K [5]
- SIA 15C 3K X 3K [4]
- GENERIC TVIPS 2K X 2K [3]
- GATAN ORIUS SC1000 4K X 2.7K [2]
- GATAN ORIUS SC600 2.7K X 2.7K [2]
- GATAN ULTRASCAN 10000 10K X 10K [2]
- GENERIC IMAGE PLATES [2]
- DECTRIS ARINA 0.2K X 0.2K [1]
- GENERIC CCD 2K X 2K [1]
- PROSCAN TEM-PIV 2K X 2K [1]
External links
- PDB [54148]
- UniProt [34251]
- PDBe-Kb [31739]
- AlphaFold DB [30805]
- InterPro [26980]
- Gene Ontology [26091]
- Pfam [23922]
- ChEBI [20257]
- ChEMBL [18207]
- DrugBank [16397]
- Complex Portal [9845]
- EMPIAR [5130]
- SCOP2 [642]
- CATH [411]
Resolution: 11.0 Å
EM Method: Single-particle
Chen B, Gao L, Bonninger M, Huang T, Krez N, Wen W, Bowen M, Lou J, Marks JD, Rummel A, Jin R
Nat Commun (2026) 17 [ Pubmed: 42337249 DOI: doi:10.1038/s41467-026-74499-7 ]
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9n3b
Q-score: 0.419
Khare B, Arnaud CA, Klose T, Rossmann MG, Crowe JE, Kuhn RJ
EMBO Rep (2026) [ DOI: doi:10.1038/s44319-026-00851-z ]
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 9h52
Q-score: 0.216
Singh V, Shiriaev D, Bilalli L, Khawaja A, Rorbach J
Nat Commun (2026) 17 [ Pubmed: 42342677 DOI: doi:10.1038/s41467-026-74700-x ]
Resolution: 3.9 Å
EM Method: Single-particle
Schmidt SL, Dostal J, Sen S, Hovan A, Walter D, Appleby MV, Kojima A, Kato HE, Beale JH, Kloz M, Schertler GFX, Isaikina P
Science (2026) 392 pp. eadz3624-eadz3624 [ Pubmed: 42348698 DOI: doi:10.1126/science.adz3624 ]
Resolution: 6.7 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9rbu
Q-score: 0.118
Vazquez-Sarandeses E, Mikirtumov V, Noel J, Kudryashev M, Daumke O
biorxiv.org (2025) [ DOI: doi:10.1101/2025.06.05.658037 ]
Resolution: 10.1 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9rc1
Q-score: 0.075
Vazquez-Sarandeses E, Mikirtumov V, Noel J, Kudryashev M, Daumke O
To Be Published
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9rmk
Q-score: 0.523
Harrison PJ, Naismith JH, Clare DK, Quigley A
To Be Published
Resolution: 3.86 Å
EM Method: Single-particle
Fitted PDBs: 9rnj
Q-score: 0.229
Matsuoka R, Oswald C, Jazayeri A, Duerr KL
To Be Published
Resolution: 2.4 Å
EM Method: Single-particle
Pellegrino S, Drulyte I, Harman M, Bezerra GA
To Be Published
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 9rqj
Q-score: 0.529
Thangaratnarajah C, Ettema TW, Slotboom DJ
To Be Published
Filter By
Current Database
- EMDB [54621]
Current status
- REL [54621]
Sample type
- Complex [46348]
- Protein [37622]
- Ligand [21850]
- RNA [5195]
- DNA [3589]
- Virus [3524]
- Cellular component [3029]
- Sample [1661]
- Cell [1018]
- Tissue [276]
- Other [262]
- Em label [1]
Organism
- Homo sapiens [20466]
- Synthetic construct [3944]
- Mus musculus [3536]
- Escherichia coli [3132]
- Severe acute respiratory syndrome coronavirus [2566]
- Saccharomyces cerevisiae [2354]
- Rattus norvegicus [1173]
- Escherichia coli [1153]
- Bos taurus [1067]
- Human immunodeficiency virus 1 [1021]
- Oryctolagus cuniculus [958]
- Sus scrofa [875]
- Saccharomyces cerevisiae [821]
- Lama glama [650]
- Xenopus laevis [631]
- Arabidopsis thaliana [581]
- Macaca mulatta [459]
- Chlamydomonas reinhardtii [370]
- Drosophila melanogaster [330]
- Mycolicibacterium smegmatis [322]
- Influenza a virus [320]
- Mycobacterium tuberculosis [251]
- Bacillus subtilis [248]
- Gallus gallus [221]
- Escherichia coli [199]
- Pseudomonas aeruginosa [189]
- Vicugna pacos [186]
- Tetrahymena thermophila [186]
- Staphylococcus aureus [178]
- Danio rerio [168]
- Thermus thermophilus [167]
- Caenorhabditis elegans [167]
- Enterobacteria phage m13 [166]
- Chaetomium thermophilum [163]
- Mycobacterium tuberculosis [143]
- Saccharomyces cerevisiae [137]
- Chaetomium thermophilum [136]
- Leishmania tarentolae [136]
- Ovis aries [132]
- Geobacillus stearothermophilus [130]
- Bacillus subtilis [126]
- Enterobacteria phage t4 [119]
- Plasmodium falciparum [118]
- Aequorea victoria [118]
- Salmonella enterica [115]
- Bacillus sp. (strain ps3) [113]
- Synechocystis sp. pcc 6803 [112]
- Escherichia virus t7 [111]
- Pseudomonas aeruginosa [104]
- Mycolicibacterium smegmatis [102]
- Streptococcus pyogenes [101]
- Schizosaccharomyces pombe [101]
- Severe acute respiratory syndrome coronavirus [100]
- Vibrio cholerae [97]
- Trypanosoma brucei [91]
- Plasmodium falciparum [91]
- Mycoplasma pneumoniae [87]
- African swine fever virus [86]
- Spinacia oleracea [80]
- Clostridioides difficile [77]
- Hepatitis b virus [73]
- Escherichia coli [73]
- Monkeypox virus [71]
- Human cytomegalovirus [71]
- Eastern equine encephalitis virus [71]
- Dna molecule [71]
- Macaca fascicularis [70]
- Cricetulus griseus [69]
- Human herpesvirus 1 [69]
- Schizosaccharomyces pombe [69]
- Salmonella enterica [69]
- Middle east respiratory syndrome-related coronavirus [68]
- Chikungunya virus [68]
- Thermus thermophilus [67]
- Klebsiella pneumoniae [67]
- (no species) [65]
- Adeno-associated virus [63]
- Pseudomonas phage phi6 [62]
- Human immunodeficiency virus [62]
- Saccharomyces cerevisiae [62]
- Enterobacteria phage t4 [60]
- Enterovirus d [60]
- Polytomella sp. pringsheim 198.80 [59]
- Enterovirus a [59]
- Dengue virus [58]
- Amanita phalloides [56]
- Lassa mammarenavirus [55]
- Clostridium botulinum [55]
- Neurospora crassa [55]
- Trypanosoma brucei [55]
- Escherichia phage lambda [54]
- Acinetobacter baumannii [54]
- (no species) [54]
- Equus caballus [54]
- Epstein-barr virus (strain gd1) [53]
- Thermoplasma acidophilum [53]
- Legionella pneumophila [53]
- Flavobacterium johnsoniae [53]
- Severe acute respiratory syndrome coronavirus [50]
- Oryza sativa [50]
EM Method
- Single-particle [48571]
- Subtomogram averaging [2732]
- Helical reconstruction [2364]
- Tomography [954]
Resolution
- < 2Å [411]
- ≥ 2Å and < 3Å [12419]
- ≥ 3Å and < 4Å [24082]
- ≥ 4Å and < 5Å [5526]
- ≥ 5Å and < 6Å [1304]
- ≥ 6Å and < 8Å [2628]
- ≥ 8Å and < 12Å [2152]
- ≥ 12Å and < 16Å [1123]
- ≥ 16Å and < 20Å [892]
- ≥ 20Å and < 30Å [2471]
- ≥ 30Å [1609]
Model molecular weight
- 0-50 kDa [623]
- 50-100 kDa [2273]
- 100-250 kDa [10964]
- 250-500 kDa [8823]
- 500-1000 kDa [4953]
- 1-2 MDa [2270]
- 2-5 MDa [2339]
- 5-10 MDa [632]
- > 10 MDa [445]
Release Date
- 2026 [6299]
- 2025 [11358]
- 2024 [8892]
- 2023 [7270]
- 2022 [5805]
- 2021 [4239]
- 2020 [3611]
- 2019 [2271]
- 2018 [1690]
- 2017 [958]
- 2016 [572]
- 2015 [6]
- 2014 [36]
- 2013 [395]
- 2012 [338]
- 2011 [213]
- 2010 [165]
- 2009 [151]
- 2008 [46]
- 2007 [102]
- 2006 [108]
- 2005 [38]
- 2004 [26]
- 2003 [31]
- 2002 [1]
Author by name
- Zhang Y [1840]
- Wang Y [1736]
- Ward AB [1688]
- Liu J [1675]
- Zhang X [1564]
- Wang X [1501]
- Li Y [1324]
- Liu Y [1276]
- Wang J [1193]
- Zhang Z [1111]
- Li X [1105]
- Li S [1085]
- Li Z [1063]
- Zhang J [967]
- Li J [963]
- Ren G [956]
- Zhang L [938]
- Zhang M [891]
- Chen Y [889]
- Wang L [872]
- Gao Y [835]
- Wang H [817]
- Wang S [811]
- Liu S [758]
- Zhang S [751]
- Li H [750]
- Chen Z [720]
- Liu C [694]
- Chen X [693]
- Wang C [663]
- Zhu Y [651]
- Zhang H [647]
- Liu Z [643]
- Liu H [639]
- Wang Q [621]
- Yang Y [621]
- Shi Y [617]
- Liu L [609]
- Zhang K [603]
- Li D [600]
- Xu Y [600]
- Liu X [587]
- Chen J [585]
- Wu H [579]
- Jiang Y [577]
- Zhou ZH [575]
- Wang Z [562]
- Beckmann R [543]
- Zhao Y [538]
- Han J [529]
- Cheng J [515]
- Yang X [515]
- Cottrell CA [510]
- Huang Y [509]
- Zhou L [500]
- Zhang P [484]
- Burton DR [478]
- Xu J [470]
- Xu C [457]
- Ozorowski G [454]
- Wu C [447]
- Wilson IA [446]
- Zhang C [436]
- Hu Z [434]
- Yu X [434]
- Wu J [432]
- Zhang W [430]
- Zhao J [428]
- Chen L [426]
- Wang W [426]
- Li W [421]
- Lu Y [419]
- Wang P [419]
- Sun Y [417]
- Li L [416]
- Zhou Y [410]
- Torres JL [409]
- Wang M [408]
- Sewall LM [405]
- Zhang R [405]
- Zhang Q [404]
- Zhou J [401]
- Zhao X [399]
- Yang F [398]
- Hu Y [389]
- Li T [389]
- Zhu X [388]
- Li M [387]
- Wu Y [384]
- Yuan Q [383]
- Zhang B [381]
- Sanders RW [380]
- Yu Z [379]
- Berninghausen O [375]
- Kotecha A [375]
- Yu J [375]
- Chiu W [370]
- Wang F [369]
- Kwong PD [367]
- Rao Z [363]
Author by ORCID
- Ren G [933]
- Ward AB [883]
- Liu J [816]
- Cottrell CA [504]
- Zhou ZH [419]
- Kotecha A [348]
- Torres JL [338]
- Brown A [337]
- Chiu W [330]
- Beckmann R [321]
- Klinge S [312]
- Skiniotis G [306]
- Kwong PD [292]
- Ozorowski G [280]
- Cheng Y [279]
- Rubinstein JL [268]
- Lyumkis D [253]
- Crispin M [249]
- Gao N [248]
- Kobilka BK [242]
- Xu HE [239]
- Raunser S [227]
- Scheres SHW [227]
- Hummer G [225]
- Nureki O [219]
- Plevka P [218]
- Andersen ES [217]
- Zeng J [211]
- Baker D [210]
- Schulman BA [210]
- Li H [209]
- Geary C [209]
- Gao GF [207]
- Zheng Q [206]
- Thoms M [205]
- Gao Y [205]
- Allen JD [205]
- Papasergi-scott MM [201]
- Edwards RJ [201]
- Amunts A [200]
- Burton DR [199]
- Kanekiyo M [198]
- Zhang P [198]
- Copps J [194]
- Schief WR [192]
- Gmeiner P [192]
- King NP [190]
- Cheng J [190]
- Fuzik T [187]
- Carnathan DG [186]
- He F [185]
- Zhang K [184]
- Han J [183]
- Kishikawa JI [182]
- Williamson JR [180]
- Cramer P [179]
- Van Gils Mj [179]
- Beck M [178]
- Vanden Broeck A [178]
- Hurt E [176]
- Zhang M [173]
- Huiskonen JT [172]
- Du J [172]
- Zhang K [170]
- Lei D [169]
- Hilger D [167]
- Borgnia MJ [167]
- Greber BJ [167]
- Kuhlbrandt W [167]
- Lander GC [167]
- Ranson NA [166]
- Henderson R [166]
- Denk T [164]
- Itoh Y [162]
- Panova O [162]
- Park YJ [162]
- Batebi H [160]
- Perez-hernandez G [160]
- Hildebrand PW [160]
- Wilson DN [160]
- Crowe Jr Je [159]
- Wang X [159]
- Sobolevsky AI [158]
- Bai XC [158]
- Rappsilber J [157]
- Stahlberg H [157]
- Sanders RW [157]
- Gui M [154]
- Zhang X [154]
- Liu J [154]
- Miotto MC [153]
- Chai P [153]
- Wilson IA [153]
- Zhang R [151]
- Veesler D [149]
- Goedert M [148]
- Xia N [148]
- Briggs JAG [148]
- Mclellan JS [148]
- Xia X [147]
Journal
- NAT COMMUN [10207]
- TO BE PUBLISHED [5969]
- NATURE [4691]
- NAT STRUCT MOL BIOL [2982]
- PNAS [2894]
- BIORXIV [2660]
- SCIENCE [2562]
- CELL [2136]
- SCI ADV [1890]
- MOL CELL [1757]
- ELIFE [1441]
- STRUCTURE [1293]
- CELL REP [1236]
- NUCLEIC ACIDS RES [1115]
- EMBO J [755]
- CELL RES [679]
- COMMUN BIOL [673]
- J MOL BIOL [618]
- J VIROL [562]
- PLOS PATHOG [495]
- J BIOL CHEM [494]
- NAT CHEM BIOL [494]
- CELL DISCOV [457]
- NAT MICROBIOL [407]
- ACTA CRYSTALLOGR D STRUCT BIOL [398]
- SCI REP [293]
- NAT METHODS [271]
- MBIO [260]
- J STRUCT BIOL [247]
- NAT PLANTS [226]
- IMMUNITY [223]
- EMBO REP [196]
- PLOS BIOL [196]
- PROTEIN SCI [193]
- J AM CHEM SOC [191]
- CELL HOST MICROBE [190]
- PROTEIN CELL [167]
- J CELL BIOL [157]
- SCI TRANSL MED [148]
- NEURON [128]
- NPJ VACCINES [125]
- VIRUSES [125]
- IUCRJ [118]
- INT J MOL SCI [101]
- ISCIENCE [101]
- PLOS ONE [97]
- LIFE SCI ALLIANCE [95]
- J MED CHEM [85]
- PNAS NEXUS [84]
- ADV SCI [78]
- SIGNAL TRANSDUCT TARGET THER [78]
- J STRUCT BIOL X [75]
- COMMUN CHEM [74]
- RES SQ [74]
- SCI IMMUNOL [73]
- BIOCHEMISTRY [72]
- ACS NANO [68]
- CURR BIOL [67]
- FEBS J [59]
- BLOOD [58]
- INT J BIOL MACROMOL [57]
- ANGEW CHEM INT ED ENGL [55]
- BIOCHEM BIOPHYS RES COMMUN [55]
- J CLIN INV [54]
- DEV CELL [53]
- ACTA NEUROPATHOL [51]
- MOL BIOL CELL [51]
- RNA [49]
- BIOMOLECULES [48]
- NAT CATAL [46]
- NAT NANOTECHNOL [45]
- FRONT MOL BIOSCI [42]
- MOL PLANT [41]
- PLANT CELL [39]
- VIROLOGY [39]
- EBIOMEDICINE [38]
- CELL REP METHODS [36]
- EMERG MICROBES INFECT [35]
- GENES DEV [34]
- PLANT COMMUN. [34]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [33]
- CELL REP MED [33]
- ACS CHEM BIOL [31]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
- FEBS LETT [31]
- NAT CHEM [31]
- ACTA PHARMACOL.SIN. [30]
- FRONT IMMUNOL [30]
- NAT IMMUNOL [30]
- BIOCHEM J [29]
- BIOCHIM BIOPHYS ACTA BIOENERG [29]
- J BACTERIOL [28]
- NAT NEUROSCI [28]
- J EXP MED [27]
- NAT CELL BIOL [27]
- NATL SCI REV [27]
- SCI SIGNAL [25]
- J GEN VIROL [24]
- ACS CENT SCI [23]
- CELL CHEM BIOL [23]
Software
- CRYOSPARC [15694]
- RELION [14151]
- CTFFIND [2534]
- GCTF [1637]
- WARP [582]
- TOMOCTF [524]
- IMOD [477]
- CISTEM [459]
- IPET [440]
- SPIDER [407]
- FREALIGN [395]
- COOT [371]
- DYNAMO [312]
- EMAN [307]
- EMAN2 [300]
- UCSF CHIMERAX [261]
- PHENIX [260]
- CHIMERA [193]
- PEET [191]
- UCSF CHIMERA [162]
- CRYOLO [139]
- JSPR [138]
- PYTOM [137]
- SPHIRE [114]
- MATLAB [109]
- XMIPP [108]
- IMAGIC [99]
- AUTO3DEM [94]
- AV3 [83]
- EMCLARITY [76]
- NOVACTF [72]
- TOM TOOLBOX [64]
- CTFFIND3 [60]
- NOVASTA [55]
- STOPGAP [54]
- CTFPHASEFLIP [49]
- SPARX [49]
- M [48]
- SITUS [41]
- TOM [41]
- ISOLDE [40]
- CRYODRGN [39]
- URO [37]
- SIMPLE [35]
- BSOFT [32]
- EMFIT [31]
- MDFF [31]
- SCIPION [31]
- APPION [30]
- EM3DR2 [28]
- MPSA [25]
- SUBTOM [25]
- CTFFIND4 [24]
- J3DR [22]
- SPIDER, APPION [22]
- O [21]
- CTFTILT [20]
- I3 [20]
- IHRSR [20]
- IMAGIC, SPIDER [20]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- JALIGN [20]
- EMAN1 [19]
- FREALIX [19]
- SPIDER, FREALIGN [17]
- IMAGIC, CUSTOM, SPIDER [16]
- MULTI-PATH SA [16]
- SPIDER, IMAGIC [16]
- APPION, SPIDER, EMAN [15]
- EMAN2, SPARX [15]
- ETOMO [15]
- IMIRS [15]
- EMAN1, EMAN2 [13]
- EMREADY [13]
- PHOELIX, SUPRIM [13]
- SPRING [13]
- EMAN, SPIDER [12]
- SPARX/EMAN2 [12]
- TOPAZ [12]
- AMIRA [11]
- GAP [11]
- IMAGIC-5, SPIDER [11]
- MOTIONCORR2 [11]
- SPIDER PACKAGE [11]
- CHIMERA, SITUS [10]
- EMAN, XMIPP [10]
- FOCUS [10]
- IMOD, BSOFT [10]
- SPIDER, EMAN [10]
- AMIRAFPM [9]
- IMOD, RAPTOR, PROTOMO [9]
- EMAN, FREALIGN [8]
- EMIRA [8]
- EMPFT EM3DR [8]
- IMAGIC, FREALIGN [8]
- MOLREP, CHIMERA [8]
- MRC [8]
- SPIDER, PACKAGE [8]
- CTFIND3 [7]
- DIREX [7]
Microscope
- FEI TITAN KRIOS [28771]
- TFS KRIOS [13695]
- FEI TALOS ARCTICA [2812]
- TFS GLACIOS [1828]
- FEI TECNAI F20 [1107]
- FEI POLARA 300 [901]
- JEOL CRYO ARM 300 [693]
- FEI TECNAI SPIRIT [676]
- FEI TECNAI F30 [640]
- FEI TITAN [558]
- ZEISS LIBRA120PLUS [454]
- FEI TECNAI ARCTICA [399]
- FEI TECNAI 20 [242]
- TFS TALOS [216]
- FEI TECNAI 12 [183]
- FEI/PHILIPS CM200FEG [175]
- JEOL 3200FSC [138]
- JEOL 2200FS [128]
- JEOL CRYO ARM 200 [94]
- FEI/PHILIPS CM300FEG/T [89]
- JEOL 2100F [77]
- TFS TALOS L120C [75]
- JEOL 2010F [70]
- TFS TALOS F200C [69]
- FEI/PHILIPS EM420 [48]
- TFS TITAN THEMIS [44]
- JEOL 2100 [41]
- FEI MORGAGNI [36]
- JEOL 3200FS [35]
- JEOL 1230 [29]
- FEI/PHILIPS CM120T [27]
- JEOL 3100FFC [26]
- TFS TUNDRA [23]
- JEOL 3000SFF [21]
- JEOL 1200EXII [19]
- FEI/PHILIPS CM200T [18]
- JEOL 4000 [17]
- FEI TECNAI 10 [15]
- FEI/PHILIPS CM200FEG/ST [14]
- JEOL 4000EX [14]
- FEI/PHILIPS CM300FEG/HE [13]
- JEOL 1400 [13]
- JEOL 1200EX [12]
- JEOL 1400/HR YPS FEG [11]
- FEI/PHILIPS CM12 [8]
- JEOL 100CX [7]
- JEOL 2000EX [6]
- FEI/PHILIPS CM200FEG/UT [5]
- FEI/PHILIPS CM300FEG/ST [5]
- JEOL 2010 [5]
- JEOL 2200FSC [5]
- JEOL 3100FEF [5]
- FEI TECNAI SPHERA [4]
- FEI/PHILIPS CM10 [4]
- JEOL KYOTO-3000SFF [4]
- OTHER [4]
- HITACHI EF2000 [3]
- JEOL 1000EES [3]
- JEOL 1010 [3]
- JEOL 1200 [3]
- JEOL 2010HT [2]
- JEOL 2010UHR [2]
- SHUIMU TOTEM 300S [2]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- HITACHI H-9500SD [1]
- HITACHI H7600 [1]
- JEOL 2000EXII [1]
- JEOL 2010HC [1]
- JEOL 2011 [1]
- ZEISS LEO912 [1]
Electron Source
- FIELD EMISSION GUN [52626]
- LAB6 [1564]
- OTHER [293]
- TUNGSTEN HAIRPIN [139]
Film or detector model
- GATAN K3 6K X 4K [14777]
- GATAN K3 BIOQUANTUM 6K X 4K [11458]
- GATAN K2 SUMMIT 4K X 4K [10195]
- FEI FALCON IV 4K X 4K [5651]
- FEI FALCON III 4K X 4K [3013]
- GATAN K2 QUANTUM 4K X 4K [1838]
- TFS FALCON 4I 4K X 4K [1354]
- FEI FALCON II 4K X 4K [1172]
- GATAN ULTRASCAN 4000 4K X 4K [880]
- KODAK SO-163 FILM [781]
- GATAN K3 BIOCONTINUUM 6K X 4K [638]
- TVIPS TEMCAM-F416 4K X 4K [540]
- FEI EAGLE 4K X 4K [424]
- OTHER [330]
- FEI CETA 4K X 4K [288]
- GATAN K2 BASE 4K X 4K [208]
- DIRECT ELECTRON DE-20 5K X 3K [120]
- GENERIC GATAN 4K X 4K [90]
- GATAN ULTRASCAN 1000 2K X 2K [86]
- GENERIC CCD [69]
- FEI FALCON I 4K X 4K [64]
- TVIPS TEMCAM-F415 4K X 4K [60]
- GENERIC TVIPS 4K X 4K [57]
- FEI EAGLE 2K X 2K [52]
- DIRECT ELECTRON DE-64 8K X 8K [48]
- GATAN K2 IS 4K X 4K [41]
- DIRECT ELECTRON DE-16 4K X 4K [37]
- GENERIC GATAN [35]
- DIRECT ELECTRON APOLLO 4K X 4K [34]
- TVIPS TEMCAM-F816 8K X 8K [30]
- GATAN MULTISCAN [22]
- DIRECT ELECTRON DE-10 5K X 4K [20]
- DIRECT ELECTRON DE-12 4K X 3K [20]
- TVIPS TEMCAM-F216 2K X 2K [17]
- TVIPS TEMCAM-F224 2K X 2K [14]
- DECTRIS SINGLA 1K X 1K [12]
- GENERIC FILM [11]
- KODAK 4489 FILM [11]
- AGFA SCIENTA FILM [9]
- GENERIC TVIPS [9]
- GATAN K2 4K X 4K [7]
- GENERIC GATAN 2K X 2K [7]
- DECTRIS ELA 1K X 0.5K [6]
- GATAN ALPINE 2.3K X 3.2K [5]
- GATAN ORIUS SC200 2K X 2K [5]
- SIA 15C 3K X 3K [4]
- GENERIC TVIPS 2K X 2K [3]
- GATAN ORIUS SC1000 4K X 2.7K [2]
- GATAN ORIUS SC600 2.7K X 2.7K [2]
- GATAN ULTRASCAN 10000 10K X 10K [2]
- GENERIC IMAGE PLATES [2]
- DECTRIS ARINA 0.2K X 0.2K [1]
- GENERIC CCD 2K X 2K [1]
- PROSCAN TEM-PIV 2K X 2K [1]
External links
- PDB [54148]
- UniProt [34251]
- PDBe-Kb [31739]
- AlphaFold DB [30805]
- InterPro [26980]
- Gene Ontology [26091]
- Pfam [23922]
- ChEBI [20257]
- ChEMBL [18207]
- DrugBank [16397]
- Complex Portal [9845]
- EMPIAR [5130]
- SCOP2 [642]
- CATH [411]
