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Filter By
Current Database
- EMDB [56635]
Current status
- REL [56635]
Sample type
- Complex [48044]
- Protein [38915]
- Ligand [22598]
- RNA [5336]
- DNA [3735]
- Virus [3597]
- Cellular component [3192]
- Sample [1661]
- Cell [1081]
- Tissue [327]
- Other [267]
- Em label [1]
Organism
- Homo sapiens [21377]
- Synthetic construct [4071]
- Mus musculus [3640]
- Escherichia coli [3217]
- Severe acute respiratory syndrome coronavirus [2619]
- Saccharomyces cerevisiae [2413]
- Rattus norvegicus [1232]
- Escherichia coli [1181]
- Bos taurus [1088]
- Human immunodeficiency virus 1 [1033]
- Oryctolagus cuniculus [1028]
- Sus scrofa [910]
- Saccharomyces cerevisiae [850]
- Lama glama [692]
- Xenopus laevis [664]
- Arabidopsis thaliana [610]
- Macaca mulatta [459]
- Chlamydomonas reinhardtii [384]
- Drosophila melanogaster [336]
- Mycolicibacterium smegmatis [322]
- Influenza a virus [321]
- Mycobacterium tuberculosis [262]
- Bacillus subtilis [249]
- Gallus gallus [222]
- Pseudomonas aeruginosa [200]
- Escherichia coli [200]
- Vicugna pacos [196]
- Tetrahymena thermophila [186]
- Staphylococcus aureus [182]
- Caenorhabditis elegans [177]
- Danio rerio [174]
- Chaetomium thermophilum [169]
- Thermus thermophilus [167]
- Enterobacteria phage m13 [166]
- Leishmania tarentolae [155]
- Mycobacterium tuberculosis [148]
- Chaetomium thermophilum [144]
- Saccharomyces cerevisiae [141]
- Ovis aries [132]
- Geobacillus stearothermophilus [131]
- Bacillus subtilis [129]
- Enterobacteria phage t4 [125]
- Pseudomonas aeruginosa [123]
- Plasmodium falciparum [123]
- Synechocystis sp. pcc 6803 [119]
- Salmonella enterica [119]
- Aequorea victoria [118]
- Bacillus sp. (strain ps3) [113]
- Escherichia virus t7 [111]
- Vibrio cholerae [111]
- Mycolicibacterium smegmatis [108]
- Schizosaccharomyces pombe [106]
- Severe acute respiratory syndrome coronavirus [104]
- Streptococcus pyogenes [103]
- Plasmodium falciparum [92]
- Trypanosoma brucei [91]
- Mycoplasma pneumoniae [87]
- African swine fever virus [86]
- Spinacia oleracea [80]
- Monkeypox virus [77]
- Clostridioides difficile [77]
- Escherichia coli [74]
- Hepatitis b virus [73]
- Dna molecule [73]
- Human cytomegalovirus [72]
- Klebsiella pneumoniae [72]
- Macaca fascicularis [72]
- Eastern equine encephalitis virus [71]
- Enterovirus d [71]
- Middle east respiratory syndrome-related coronavirus [70]
- Cricetulus griseus [69]
- Human herpesvirus 1 [69]
- Schizosaccharomyces pombe [69]
- Salmonella enterica [69]
- Chikungunya virus [68]
- Enterobacteria phage t4 [67]
- Thermus thermophilus [67]
- (no species) [65]
- Human immunodeficiency virus [63]
- Adeno-associated virus [63]
- Pseudomonas phage phi6 [62]
- Saccharomyces cerevisiae [62]
- Clostridium botulinum [59]
- Polytomella sp. pringsheim 198.80 [59]
- Enterovirus a [59]
- Dengue virus [58]
- Equus caballus [57]
- Amanita phalloides [56]
- Lassa mammarenavirus [55]
- Oryza sativa [55]
- Acinetobacter baumannii [55]
- Neurospora crassa [55]
- Trypanosoma brucei [55]
- Epstein-barr virus (strain gd1) [54]
- Escherichia phage lambda [54]
- Legionella pneumophila [54]
- (no species) [54]
- Thermoplasma acidophilum [53]
- Flavobacterium johnsoniae [53]
- Streptococcus thermophilus [51]
EM Method
- Single-particle [50339]
- Subtomogram averaging [2835]
- Helical reconstruction [2507]
- Tomography [954]
Resolution
- < 2Å [430]
- ≥ 2Å and < 3Å [12996]
- ≥ 3Å and < 4Å [25074]
- ≥ 4Å and < 5Å [5721]
- ≥ 5Å and < 6Å [1350]
- ≥ 6Å and < 8Å [2701]
- ≥ 8Å and < 12Å [2196]
- ≥ 12Å and < 16Å [1143]
- ≥ 16Å and < 20Å [915]
- ≥ 20Å and < 30Å [2489]
- ≥ 30Å [1616]
Model molecular weight
- 0-50 kDa [664]
- 50-100 kDa [2265]
- 100-250 kDa [10441]
- 250-500 kDa [8489]
- 500-1000 kDa [4569]
- 1-2 MDa [1975]
- 2-5 MDa [2272]
- 5-10 MDa [635]
- > 10 MDa [449]
Release Date
- 2026 [8314]
- 2025 [11358]
- 2024 [8891]
- 2023 [7270]
- 2022 [5805]
- 2021 [4239]
- 2020 [3611]
- 2019 [2271]
- 2018 [1690]
- 2017 [958]
- 2016 [572]
- 2015 [6]
- 2014 [36]
- 2013 [395]
- 2012 [338]
- 2011 [213]
- 2010 [165]
- 2009 [151]
- 2008 [46]
- 2007 [102]
- 2006 [108]
- 2005 [38]
- 2004 [26]
- 2003 [31]
- 2002 [1]
Author by name
- Zhang Y [1888]
- Wang Y [1778]
- Liu J [1736]
- Ward AB [1688]
- Wang X [1603]
- Zhang X [1600]
- Li Y [1395]
- Liu Y [1331]
- Wang J [1277]
- Zhang Z [1166]
- Li X [1141]
- Li Z [1128]
- Li S [1106]
- Zhang J [1003]
- Li J [986]
- Zhang L [976]
- Ren G [956]
- Chen Y [938]
- Wang L [922]
- Zhang M [915]
- Gao Y [841]
- Wang H [831]
- Wang S [831]
- Liu S [826]
- Zhang S [799]
- Li H [793]
- Chen Z [747]
- Chen X [745]
- Liu C [738]
- Wang C [713]
- Zhu Y [685]
- Liu Z [675]
- Zhang H [668]
- Shi Y [654]
- Liu H [641]
- Liu L [639]
- Yang Y [639]
- Wang Q [633]
- Xu Y [630]
- Li D [616]
- Wu H [616]
- Zhang K [614]
- Chen J [602]
- Liu X [600]
- Jiang Y [596]
- Zhou ZH [584]
- Wang Z [567]
- Zhao Y [554]
- Wu C [552]
- Han J [551]
- Beckmann R [543]
- Cheng J [531]
- Yang X [527]
- Huang Y [518]
- Cottrell CA [510]
- Zhang P [505]
- Zhou L [505]
- Xu J [483]
- Burton DR [478]
- Xu C [461]
- Li W [460]
- Wang W [456]
- Ozorowski G [454]
- Wang M [453]
- Chen L [452]
- Wilson IA [447]
- Wu J [447]
- Zhang C [445]
- Hu Z [443]
- Zhao J [442]
- Yu X [440]
- Sun Y [437]
- Kotecha A [435]
- Zhang B [435]
- Li L [433]
- Zhang W [431]
- Zhang Q [428]
- Wang P [420]
- Lu Y [419]
- Zhou Y [416]
- Li M [414]
- Zhou J [413]
- Zhang R [410]
- Torres JL [409]
- Zhao X [407]
- Sewall LM [405]
- Yang F [404]
- Hu Y [401]
- Zhu X [399]
- Wu Y [395]
- Yuan Q [395]
- Li T [389]
- Liu B [386]
- Kwong PD [385]
- Yu J [384]
- Yu Z [384]
- Yang W [382]
- Sanders RW [380]
- Cramer P [378]
- Berninghausen O [375]
Author by ORCID
- Ren G [933]
- Ward AB [867]
- Liu J [816]
- Cottrell CA [504]
- Zhou ZH [424]
- Kotecha A [354]
- Torres JL [338]
- Brown A [336]
- Chiu W [323]
- Beckmann R [312]
- Skiniotis G [304]
- Klinge S [299]
- Kwong PD [297]
- Ozorowski G [281]
- Cheng Y [277]
- Crispin M [264]
- Lyumkis D [260]
- Rubinstein JL [255]
- Gao N [245]
- Kobilka BK [242]
- Zhang P [240]
- Xu HE [238]
- Plevka P [228]
- Scheres SHW [226]
- Allen JD [220]
- Andersen ES [217]
- Raunser S [215]
- Baker D [214]
- Nureki O [211]
- Zeng J [209]
- Geary C [209]
- Schulman BA [208]
- Gao GF [207]
- Hummer G [205]
- Gao Y [205]
- Zheng Q [204]
- Thoms M [203]
- Papasergi-scott MM [201]
- Burton DR [199]
- Kanekiyo M [198]
- Edwards RJ [197]
- Amunts A [195]
- Fuzik T [194]
- King NP [194]
- Copps J [194]
- Schief WR [193]
- Gmeiner P [192]
- Carnathan DG [186]
- He F [185]
- Han J [183]
- Cheng J [182]
- Williamson JR [180]
- Van Gils Mj [179]
- Hurt E [176]
- Beck M [174]
- Zhang K [174]
- Vanden Broeck A [174]
- Li H [173]
- Zhang M [173]
- Lei D [172]
- Huiskonen JT [168]
- Du J [168]
- Hilger D [167]
- Borgnia MJ [167]
- Lander GC [167]
- Henderson R [166]
- Ranson NA [164]
- Kishikawa JI [164]
- Cramer P [163]
- Denk T [163]
- Panova O [162]
- Park YJ [162]
- Wilson DN [162]
- Gui M [160]
- Batebi H [160]
- Perez-hernandez G [160]
- Hildebrand PW [160]
- Wang X [159]
- Greber BJ [158]
- Sanders RW [157]
- Bai XC [157]
- Liu J [157]
- Mclellan JS [154]
- Miotto MC [153]
- Mahamid J [152]
- Zhang K [152]
- Stahlberg H [152]
- Kuhlbrandt W [152]
- Zhang R [151]
- Novacek J [151]
- Rappsilber J [150]
- Crowe Jr Je [150]
- Veesler D [149]
- Goedert M [148]
- Wilson IA [148]
- Briggs JAG [148]
- Lau B [147]
- Wang CH [147]
- Itoh Y [146]
- Li S [146]
Journal
- NAT COMMUN [10686]
- TO BE PUBLISHED [6238]
- NATURE [4813]
- NAT STRUCT MOL BIOL [3126]
- PNAS [2980]
- BIORXIV [2722]
- SCIENCE [2587]
- CELL [2187]
- SCI ADV [2123]
- MOL CELL [1859]
- ELIFE [1461]
- STRUCTURE [1316]
- CELL REP [1271]
- NUCLEIC ACIDS RES [1184]
- EMBO J [774]
- COMMUN BIOL [696]
- CELL RES [695]
- J MOL BIOL [642]
- J VIROL [564]
- NAT CHEM BIOL [508]
- J BIOL CHEM [506]
- PLOS PATHOG [506]
- CELL DISCOV [466]
- ACTA CRYSTALLOGR D STRUCT BIOL [419]
- NAT MICROBIOL [418]
- SCI REP [293]
- NAT METHODS [272]
- MBIO [261]
- J STRUCT BIOL [252]
- NAT PLANTS [227]
- IMMUNITY [224]
- PLOS BIOL [200]
- J AM CHEM SOC [198]
- PROTEIN SCI [198]
- EMBO REP [196]
- CELL HOST MICROBE [190]
- PROTEIN CELL [173]
- J CELL BIOL [157]
- SCI TRANSL MED [150]
- NEURON [130]
- NPJ VACCINES [125]
- VIRUSES [125]
- IUCRJ [120]
- INT J MOL SCI [106]
- ISCIENCE [105]
- LIFE SCI ALLIANCE [100]
- PLOS ONE [97]
- J MED CHEM [88]
- ADV SCI [84]
- PNAS NEXUS [84]
- J STRUCT BIOL X [82]
- RES SQ [80]
- SIGNAL TRANSDUCT TARGET THER [80]
- BIOCHEMISTRY [76]
- COMMUN CHEM [74]
- SCI IMMUNOL [73]
- VITA [72]
- CURR BIOL [71]
- ACS NANO [68]
- BIOCHEM BIOPHYS RES COMMUN [62]
- ACTA NEUROPATHOL [61]
- BLOOD [60]
- FEBS J [59]
- INT J BIOL MACROMOL [57]
- ANGEW CHEM INT ED ENGL [55]
- BIOMOLECULES [54]
- J CLIN INV [54]
- DEV CELL [53]
- MOL BIOL CELL [51]
- MOL PLANT [50]
- RNA [49]
- NAT CATAL [48]
- NAT NANOTECHNOL [45]
- FRONT MOL BIOSCI [42]
- NAT IMMUNOL [40]
- PLANT CELL [39]
- VIROLOGY [39]
- EBIOMEDICINE [38]
- CELL REP METHODS [36]
- CELL DEATH DIFFER. [35]
- EMERG MICROBES INFECT [35]
- GENES DEV [34]
- PLANT COMMUN. [34]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [33]
- CELL REP MED [33]
- ACS CHEM BIOL [32]
- ACTA PHARMACOL.SIN. [31]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
- FEBS LETT [31]
- NAT CHEM [31]
- FRONT IMMUNOL [30]
- NAT CELL BIOL [30]
- BIOCHEM J [29]
- BIOCHIM BIOPHYS ACTA BIOENERG [29]
- J BACTERIOL [28]
- NAT NEUROSCI [28]
- J EXP MED [27]
- NATL SCI REV [27]
- CELL CHEM BIOL [25]
- SCI SIGNAL [25]
Software
- CRYOSPARC [17021]
- RELION [14715]
- CTFFIND [2809]
- GCTF [1765]
- WARP [641]
- TOMOCTF [524]
- IMOD [497]
- CISTEM [467]
- IPET [440]
- SPIDER [407]
- FREALIGN [399]
- COOT [383]
- PHENIX [331]
- DYNAMO [330]
- EMAN [309]
- EMAN2 [302]
- UCSF CHIMERAX [299]
- CHIMERA [193]
- PEET [191]
- UCSF CHIMERA [166]
- PYTOM [149]
- CRYOLO [145]
- JSPR [138]
- SPHIRE [114]
- MATLAB [109]
- XMIPP [108]
- IMAGIC [102]
- AUTO3DEM [94]
- EMCLARITY [92]
- AV3 [83]
- NOVACTF [72]
- TOM TOOLBOX [64]
- CTFFIND3 [60]
- NOVASTA [55]
- M [54]
- STOPGAP [54]
- CTFPHASEFLIP [52]
- SPARX [49]
- ISOLDE [45]
- SITUS [41]
- TOM [41]
- CRYODRGN [39]
- SIMPLE [38]
- URO [37]
- BSOFT [32]
- EMFIT [31]
- MDFF [31]
- SCIPION [31]
- APPION [30]
- EM3DR2 [28]
- CTFFIND4 [25]
- MPSA [25]
- SUBTOM [25]
- J3DR [22]
- SPIDER, APPION [22]
- I3 [21]
- O [21]
- CTFTILT [20]
- IHRSR [20]
- IMAGIC, SPIDER [20]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- JALIGN [20]
- EMAN1 [19]
- FREALIX [19]
- MOTIONCORR2 [19]
- SPIDER, FREALIGN [17]
- IMAGIC, CUSTOM, SPIDER [16]
- MULTI-PATH SA [16]
- SPIDER, IMAGIC [16]
- APPION, SPIDER, EMAN [15]
- EMAN2, SPARX [15]
- ETOMO [15]
- IMIRS [15]
- TOPAZ [15]
- EMAN1, EMAN2 [13]
- EMREADY [13]
- PHOELIX, SUPRIM [13]
- SPRING [13]
- EMAN, SPIDER [12]
- SPARX/EMAN2 [12]
- AMIRA [11]
- GAP [11]
- IMAGIC-5, SPIDER [11]
- SPIDER PACKAGE [11]
- CHIMERA, SITUS [10]
- EMAN, XMIPP [10]
- FOCUS [10]
- IMOD, BSOFT [10]
- SPIDER, EMAN [10]
- AMIRAFPM [9]
- IMOD, RAPTOR, PROTOMO [9]
- EMAN, FREALIGN [8]
- EMIRA [8]
- EMPFT EM3DR [8]
- EPU [8]
- IMAGIC, FREALIGN [8]
- MOLREP, CHIMERA [8]
- MRC [8]
- SPIDER, PACKAGE [8]
- CTFIND3 [7]
Microscope
- FEI TITAN KRIOS [28770]
- TFS KRIOS [15354]
- FEI TALOS ARCTICA [2933]
- TFS GLACIOS [1948]
- FEI TECNAI F20 [1108]
- FEI POLARA 300 [938]
- JEOL CRYO ARM 300 [713]
- FEI TECNAI SPIRIT [676]
- FEI TECNAI F30 [648]
- FEI TITAN [558]
- ZEISS LIBRA120PLUS [454]
- FEI TECNAI ARCTICA [408]
- FEI TECNAI 20 [245]
- TFS TALOS [227]
- FEI TECNAI 12 [183]
- FEI/PHILIPS CM200FEG [175]
- JEOL 3200FSC [138]
- JEOL 2200FS [131]
- JEOL CRYO ARM 200 [96]
- FEI/PHILIPS CM300FEG/T [89]
- JEOL 2100F [77]
- TFS TALOS L120C [75]
- JEOL 2010F [70]
- TFS TALOS F200C [70]
- TFS TITAN THEMIS [50]
- FEI/PHILIPS EM420 [48]
- FEI MORGAGNI [44]
- JEOL 2100 [41]
- JEOL 3200FS [35]
- JEOL 1230 [29]
- FEI/PHILIPS CM120T [27]
- JEOL 3100FFC [26]
- TFS TUNDRA [23]
- JEOL 3000SFF [21]
- JEOL 1200EXII [19]
- FEI/PHILIPS CM200T [18]
- JEOL 4000 [17]
- FEI TECNAI 10 [15]
- FEI/PHILIPS CM200FEG/ST [14]
- JEOL 4000EX [14]
- FEI/PHILIPS CM300FEG/HE [13]
- JEOL 1400 [13]
- JEOL 1200EX [12]
- JEOL 1400/HR YPS FEG [11]
- FEI/PHILIPS CM12 [8]
- SHUIMU TOTEM 300S [8]
- JEOL 100CX [7]
- JEOL 2000EX [6]
- FEI/PHILIPS CM200FEG/UT [5]
- FEI/PHILIPS CM300FEG/ST [5]
- JEOL 2010 [5]
- JEOL 2200FSC [5]
- JEOL 3100FEF [5]
- FEI TECNAI SPHERA [4]
- FEI/PHILIPS CM10 [4]
- JEOL KYOTO-3000SFF [4]
- OTHER [4]
- HITACHI EF2000 [3]
- JEOL 1000EES [3]
- JEOL 1010 [3]
- JEOL 1200 [3]
- JEOL 2010HT [2]
- JEOL 2010UHR [2]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- HITACHI H-9500SD [1]
- HITACHI H7600 [1]
- JEOL 2000EXII [1]
- JEOL 2010HC [1]
- JEOL 2011 [1]
- ZEISS LEO912 [1]
Electron Source
- FIELD EMISSION GUN [54619]
- LAB6 [1564]
- OTHER [314]
- TUNGSTEN HAIRPIN [139]
Film or detector model
- GATAN K3 6K X 4K [15467]
- GATAN K3 BIOQUANTUM 6K X 4K [11809]
- GATAN K2 SUMMIT 4K X 4K [10275]
- FEI FALCON IV 4K X 4K [6085]
- FEI FALCON III 4K X 4K [3093]
- GATAN K2 QUANTUM 4K X 4K [1853]
- TFS FALCON 4I 4K X 4K [1625]
- FEI FALCON II 4K X 4K [1177]
- GATAN ULTRASCAN 4000 4K X 4K [880]
- KODAK SO-163 FILM [781]
- GATAN K3 BIOCONTINUUM 6K X 4K [700]
- TVIPS TEMCAM-F416 4K X 4K [540]
- FEI EAGLE 4K X 4K [424]
- OTHER [340]
- FEI CETA 4K X 4K [291]
- GATAN K2 BASE 4K X 4K [209]
- DIRECT ELECTRON DE-20 5K X 3K [120]
- GENERIC GATAN 4K X 4K [90]
- GATAN ULTRASCAN 1000 2K X 2K [86]
- FEI FALCON I 4K X 4K [83]
- GENERIC CCD [69]
- TVIPS TEMCAM-F415 4K X 4K [60]
- GENERIC TVIPS 4K X 4K [57]
- FEI EAGLE 2K X 2K [52]
- DIRECT ELECTRON DE-64 8K X 8K [48]
- GATAN K2 IS 4K X 4K [41]
- DIRECT ELECTRON DE-16 4K X 4K [37]
- DIRECT ELECTRON APOLLO 4K X 4K [36]
- GENERIC GATAN [35]
- TVIPS TEMCAM-F816 8K X 8K [30]
- GATAN MULTISCAN [22]
- DIRECT ELECTRON DE-10 5K X 4K [20]
- DIRECT ELECTRON DE-12 4K X 3K [20]
- TVIPS TEMCAM-F216 2K X 2K [17]
- TVIPS TEMCAM-F224 2K X 2K [14]
- DECTRIS SINGLA 1K X 1K [12]
- GENERIC FILM [11]
- KODAK 4489 FILM [11]
- AGFA SCIENTA FILM [9]
- GENERIC TVIPS [9]
- GATAN ORIUS SC200 2K X 2K [8]
- GATAN K2 4K X 4K [7]
- GENERIC GATAN 2K X 2K [7]
- DECTRIS ELA 1K X 0.5K [6]
- GATAN ALPINE 2.3K X 3.2K [5]
- SIA 15C 3K X 3K [4]
- GENERIC TVIPS 2K X 2K [3]
- GATAN ORIUS SC1000 4K X 2.7K [2]
- GATAN ORIUS SC600 2.7K X 2.7K [2]
- GATAN ULTRASCAN 10000 10K X 10K [2]
- GENERIC IMAGE PLATES [2]
- DECTRIS ARINA 0.2K X 0.2K [1]
- GENERIC CCD 2K X 2K [1]
- PROSCAN TEM-PIV 2K X 2K [1]
External links
- PDB [52681]
- UniProt [32667]
- PDBe-Kb [30142]
- AlphaFold DB [29238]
- InterPro [25365]
- Gene Ontology [24688]
- Pfam [22890]
- ChEBI [18482]
- ChEMBL [16738]
- DrugBank [14771]
- Complex Portal [9275]
- EMPIAR [4941]
- SCOP2 [550]
- CATH [390]
CryoEM
Q-score:
0.333
Similar entry percentile: 4%
Similar entry percentile: 4%
Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]
CryoEM
Q-score:
0.333
Similar entry percentile: 2%
Similar entry percentile: 2%
Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]
CryoEM
Q-score:
0.512
Similar entry percentile: 43%
Similar entry percentile: 43%
Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]
CryoEM
Q-score:
0.461
Similar entry percentile: 48%
Similar entry percentile: 48%
Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.78 Å
EM Method: Single-particle
Resolution: 2.78 Å
EM Method: Single-particle
Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.34 Å
EM Method: Single-particle
Resolution: 3.34 Å
EM Method: Single-particle
Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]
CryoEM
Q-score:
0.164
Similar entry percentile: 9%
Similar entry percentile: 9%
Dubey S, Noinaj N
To Be Published
CryoEM
Q-score:
0.152
Similar entry percentile: 4%
Similar entry percentile: 4%
Yu Z, Sathyanarayana P, Tan JMJT, Hu S, Fan X, Gao A, Kranzusch PJ, Loparo JJ, Abraham J
Nature (2026) [ DOI: doi:10.1038/s41586-026-10937-2 ]
Composite map
CryoEM
Q-score:
0.458
Similar entry percentile: 21%
Similar entry percentile: 21%
Nadenoen T, Vanden Broeck A
To Be Published
Composite map
CryoEM
Q-score:
0.422
Similar entry percentile: 15%
Similar entry percentile: 15%
Nadenoen T, Vanden Broeck A
To Be Published
Filter By
Current Database
- EMDB [56635]
Current status
- REL [56635]
Sample type
- Complex [48044]
- Protein [38915]
- Ligand [22598]
- RNA [5336]
- DNA [3735]
- Virus [3597]
- Cellular component [3192]
- Sample [1661]
- Cell [1081]
- Tissue [327]
- Other [267]
- Em label [1]
Organism
- Homo sapiens [21377]
- Synthetic construct [4071]
- Mus musculus [3640]
- Escherichia coli [3217]
- Severe acute respiratory syndrome coronavirus [2619]
- Saccharomyces cerevisiae [2413]
- Rattus norvegicus [1232]
- Escherichia coli [1181]
- Bos taurus [1088]
- Human immunodeficiency virus 1 [1033]
- Oryctolagus cuniculus [1028]
- Sus scrofa [910]
- Saccharomyces cerevisiae [850]
- Lama glama [692]
- Xenopus laevis [664]
- Arabidopsis thaliana [610]
- Macaca mulatta [459]
- Chlamydomonas reinhardtii [384]
- Drosophila melanogaster [336]
- Mycolicibacterium smegmatis [322]
- Influenza a virus [321]
- Mycobacterium tuberculosis [262]
- Bacillus subtilis [249]
- Gallus gallus [222]
- Pseudomonas aeruginosa [200]
- Escherichia coli [200]
- Vicugna pacos [196]
- Tetrahymena thermophila [186]
- Staphylococcus aureus [182]
- Caenorhabditis elegans [177]
- Danio rerio [174]
- Chaetomium thermophilum [169]
- Thermus thermophilus [167]
- Enterobacteria phage m13 [166]
- Leishmania tarentolae [155]
- Mycobacterium tuberculosis [148]
- Chaetomium thermophilum [144]
- Saccharomyces cerevisiae [141]
- Ovis aries [132]
- Geobacillus stearothermophilus [131]
- Bacillus subtilis [129]
- Enterobacteria phage t4 [125]
- Pseudomonas aeruginosa [123]
- Plasmodium falciparum [123]
- Synechocystis sp. pcc 6803 [119]
- Salmonella enterica [119]
- Aequorea victoria [118]
- Bacillus sp. (strain ps3) [113]
- Escherichia virus t7 [111]
- Vibrio cholerae [111]
- Mycolicibacterium smegmatis [108]
- Schizosaccharomyces pombe [106]
- Severe acute respiratory syndrome coronavirus [104]
- Streptococcus pyogenes [103]
- Plasmodium falciparum [92]
- Trypanosoma brucei [91]
- Mycoplasma pneumoniae [87]
- African swine fever virus [86]
- Spinacia oleracea [80]
- Monkeypox virus [77]
- Clostridioides difficile [77]
- Escherichia coli [74]
- Hepatitis b virus [73]
- Dna molecule [73]
- Human cytomegalovirus [72]
- Klebsiella pneumoniae [72]
- Macaca fascicularis [72]
- Eastern equine encephalitis virus [71]
- Enterovirus d [71]
- Middle east respiratory syndrome-related coronavirus [70]
- Cricetulus griseus [69]
- Human herpesvirus 1 [69]
- Schizosaccharomyces pombe [69]
- Salmonella enterica [69]
- Chikungunya virus [68]
- Enterobacteria phage t4 [67]
- Thermus thermophilus [67]
- (no species) [65]
- Human immunodeficiency virus [63]
- Adeno-associated virus [63]
- Pseudomonas phage phi6 [62]
- Saccharomyces cerevisiae [62]
- Clostridium botulinum [59]
- Polytomella sp. pringsheim 198.80 [59]
- Enterovirus a [59]
- Dengue virus [58]
- Equus caballus [57]
- Amanita phalloides [56]
- Lassa mammarenavirus [55]
- Oryza sativa [55]
- Acinetobacter baumannii [55]
- Neurospora crassa [55]
- Trypanosoma brucei [55]
- Epstein-barr virus (strain gd1) [54]
- Escherichia phage lambda [54]
- Legionella pneumophila [54]
- (no species) [54]
- Thermoplasma acidophilum [53]
- Flavobacterium johnsoniae [53]
- Streptococcus thermophilus [51]
EM Method
- Single-particle [50339]
- Subtomogram averaging [2835]
- Helical reconstruction [2507]
- Tomography [954]
Resolution
- < 2Å [430]
- ≥ 2Å and < 3Å [12996]
- ≥ 3Å and < 4Å [25074]
- ≥ 4Å and < 5Å [5721]
- ≥ 5Å and < 6Å [1350]
- ≥ 6Å and < 8Å [2701]
- ≥ 8Å and < 12Å [2196]
- ≥ 12Å and < 16Å [1143]
- ≥ 16Å and < 20Å [915]
- ≥ 20Å and < 30Å [2489]
- ≥ 30Å [1616]
Model molecular weight
- 0-50 kDa [664]
- 50-100 kDa [2265]
- 100-250 kDa [10441]
- 250-500 kDa [8489]
- 500-1000 kDa [4569]
- 1-2 MDa [1975]
- 2-5 MDa [2272]
- 5-10 MDa [635]
- > 10 MDa [449]
Release Date
- 2026 [8314]
- 2025 [11358]
- 2024 [8891]
- 2023 [7270]
- 2022 [5805]
- 2021 [4239]
- 2020 [3611]
- 2019 [2271]
- 2018 [1690]
- 2017 [958]
- 2016 [572]
- 2015 [6]
- 2014 [36]
- 2013 [395]
- 2012 [338]
- 2011 [213]
- 2010 [165]
- 2009 [151]
- 2008 [46]
- 2007 [102]
- 2006 [108]
- 2005 [38]
- 2004 [26]
- 2003 [31]
- 2002 [1]
Author by name
- Zhang Y [1888]
- Wang Y [1778]
- Liu J [1736]
- Ward AB [1688]
- Wang X [1603]
- Zhang X [1600]
- Li Y [1395]
- Liu Y [1331]
- Wang J [1277]
- Zhang Z [1166]
- Li X [1141]
- Li Z [1128]
- Li S [1106]
- Zhang J [1003]
- Li J [986]
- Zhang L [976]
- Ren G [956]
- Chen Y [938]
- Wang L [922]
- Zhang M [915]
- Gao Y [841]
- Wang H [831]
- Wang S [831]
- Liu S [826]
- Zhang S [799]
- Li H [793]
- Chen Z [747]
- Chen X [745]
- Liu C [738]
- Wang C [713]
- Zhu Y [685]
- Liu Z [675]
- Zhang H [668]
- Shi Y [654]
- Liu H [641]
- Liu L [639]
- Yang Y [639]
- Wang Q [633]
- Xu Y [630]
- Li D [616]
- Wu H [616]
- Zhang K [614]
- Chen J [602]
- Liu X [600]
- Jiang Y [596]
- Zhou ZH [584]
- Wang Z [567]
- Zhao Y [554]
- Wu C [552]
- Han J [551]
- Beckmann R [543]
- Cheng J [531]
- Yang X [527]
- Huang Y [518]
- Cottrell CA [510]
- Zhang P [505]
- Zhou L [505]
- Xu J [483]
- Burton DR [478]
- Xu C [461]
- Li W [460]
- Wang W [456]
- Ozorowski G [454]
- Wang M [453]
- Chen L [452]
- Wilson IA [447]
- Wu J [447]
- Zhang C [445]
- Hu Z [443]
- Zhao J [442]
- Yu X [440]
- Sun Y [437]
- Kotecha A [435]
- Zhang B [435]
- Li L [433]
- Zhang W [431]
- Zhang Q [428]
- Wang P [420]
- Lu Y [419]
- Zhou Y [416]
- Li M [414]
- Zhou J [413]
- Zhang R [410]
- Torres JL [409]
- Zhao X [407]
- Sewall LM [405]
- Yang F [404]
- Hu Y [401]
- Zhu X [399]
- Wu Y [395]
- Yuan Q [395]
- Li T [389]
- Liu B [386]
- Kwong PD [385]
- Yu J [384]
- Yu Z [384]
- Yang W [382]
- Sanders RW [380]
- Cramer P [378]
- Berninghausen O [375]
Author by ORCID
- Ren G [933]
- Ward AB [867]
- Liu J [816]
- Cottrell CA [504]
- Zhou ZH [424]
- Kotecha A [354]
- Torres JL [338]
- Brown A [336]
- Chiu W [323]
- Beckmann R [312]
- Skiniotis G [304]
- Klinge S [299]
- Kwong PD [297]
- Ozorowski G [281]
- Cheng Y [277]
- Crispin M [264]
- Lyumkis D [260]
- Rubinstein JL [255]
- Gao N [245]
- Kobilka BK [242]
- Zhang P [240]
- Xu HE [238]
- Plevka P [228]
- Scheres SHW [226]
- Allen JD [220]
- Andersen ES [217]
- Raunser S [215]
- Baker D [214]
- Nureki O [211]
- Zeng J [209]
- Geary C [209]
- Schulman BA [208]
- Gao GF [207]
- Hummer G [205]
- Gao Y [205]
- Zheng Q [204]
- Thoms M [203]
- Papasergi-scott MM [201]
- Burton DR [199]
- Kanekiyo M [198]
- Edwards RJ [197]
- Amunts A [195]
- Fuzik T [194]
- King NP [194]
- Copps J [194]
- Schief WR [193]
- Gmeiner P [192]
- Carnathan DG [186]
- He F [185]
- Han J [183]
- Cheng J [182]
- Williamson JR [180]
- Van Gils Mj [179]
- Hurt E [176]
- Beck M [174]
- Zhang K [174]
- Vanden Broeck A [174]
- Li H [173]
- Zhang M [173]
- Lei D [172]
- Huiskonen JT [168]
- Du J [168]
- Hilger D [167]
- Borgnia MJ [167]
- Lander GC [167]
- Henderson R [166]
- Ranson NA [164]
- Kishikawa JI [164]
- Cramer P [163]
- Denk T [163]
- Panova O [162]
- Park YJ [162]
- Wilson DN [162]
- Gui M [160]
- Batebi H [160]
- Perez-hernandez G [160]
- Hildebrand PW [160]
- Wang X [159]
- Greber BJ [158]
- Sanders RW [157]
- Bai XC [157]
- Liu J [157]
- Mclellan JS [154]
- Miotto MC [153]
- Mahamid J [152]
- Zhang K [152]
- Stahlberg H [152]
- Kuhlbrandt W [152]
- Zhang R [151]
- Novacek J [151]
- Rappsilber J [150]
- Crowe Jr Je [150]
- Veesler D [149]
- Goedert M [148]
- Wilson IA [148]
- Briggs JAG [148]
- Lau B [147]
- Wang CH [147]
- Itoh Y [146]
- Li S [146]
Journal
- NAT COMMUN [10686]
- TO BE PUBLISHED [6238]
- NATURE [4813]
- NAT STRUCT MOL BIOL [3126]
- PNAS [2980]
- BIORXIV [2722]
- SCIENCE [2587]
- CELL [2187]
- SCI ADV [2123]
- MOL CELL [1859]
- ELIFE [1461]
- STRUCTURE [1316]
- CELL REP [1271]
- NUCLEIC ACIDS RES [1184]
- EMBO J [774]
- COMMUN BIOL [696]
- CELL RES [695]
- J MOL BIOL [642]
- J VIROL [564]
- NAT CHEM BIOL [508]
- J BIOL CHEM [506]
- PLOS PATHOG [506]
- CELL DISCOV [466]
- ACTA CRYSTALLOGR D STRUCT BIOL [419]
- NAT MICROBIOL [418]
- SCI REP [293]
- NAT METHODS [272]
- MBIO [261]
- J STRUCT BIOL [252]
- NAT PLANTS [227]
- IMMUNITY [224]
- PLOS BIOL [200]
- J AM CHEM SOC [198]
- PROTEIN SCI [198]
- EMBO REP [196]
- CELL HOST MICROBE [190]
- PROTEIN CELL [173]
- J CELL BIOL [157]
- SCI TRANSL MED [150]
- NEURON [130]
- NPJ VACCINES [125]
- VIRUSES [125]
- IUCRJ [120]
- INT J MOL SCI [106]
- ISCIENCE [105]
- LIFE SCI ALLIANCE [100]
- PLOS ONE [97]
- J MED CHEM [88]
- ADV SCI [84]
- PNAS NEXUS [84]
- J STRUCT BIOL X [82]
- RES SQ [80]
- SIGNAL TRANSDUCT TARGET THER [80]
- BIOCHEMISTRY [76]
- COMMUN CHEM [74]
- SCI IMMUNOL [73]
- VITA [72]
- CURR BIOL [71]
- ACS NANO [68]
- BIOCHEM BIOPHYS RES COMMUN [62]
- ACTA NEUROPATHOL [61]
- BLOOD [60]
- FEBS J [59]
- INT J BIOL MACROMOL [57]
- ANGEW CHEM INT ED ENGL [55]
- BIOMOLECULES [54]
- J CLIN INV [54]
- DEV CELL [53]
- MOL BIOL CELL [51]
- MOL PLANT [50]
- RNA [49]
- NAT CATAL [48]
- NAT NANOTECHNOL [45]
- FRONT MOL BIOSCI [42]
- NAT IMMUNOL [40]
- PLANT CELL [39]
- VIROLOGY [39]
- EBIOMEDICINE [38]
- CELL REP METHODS [36]
- CELL DEATH DIFFER. [35]
- EMERG MICROBES INFECT [35]
- GENES DEV [34]
- PLANT COMMUN. [34]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [33]
- CELL REP MED [33]
- ACS CHEM BIOL [32]
- ACTA PHARMACOL.SIN. [31]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
- FEBS LETT [31]
- NAT CHEM [31]
- FRONT IMMUNOL [30]
- NAT CELL BIOL [30]
- BIOCHEM J [29]
- BIOCHIM BIOPHYS ACTA BIOENERG [29]
- J BACTERIOL [28]
- NAT NEUROSCI [28]
- J EXP MED [27]
- NATL SCI REV [27]
- CELL CHEM BIOL [25]
- SCI SIGNAL [25]
Software
- CRYOSPARC [17021]
- RELION [14715]
- CTFFIND [2809]
- GCTF [1765]
- WARP [641]
- TOMOCTF [524]
- IMOD [497]
- CISTEM [467]
- IPET [440]
- SPIDER [407]
- FREALIGN [399]
- COOT [383]
- PHENIX [331]
- DYNAMO [330]
- EMAN [309]
- EMAN2 [302]
- UCSF CHIMERAX [299]
- CHIMERA [193]
- PEET [191]
- UCSF CHIMERA [166]
- PYTOM [149]
- CRYOLO [145]
- JSPR [138]
- SPHIRE [114]
- MATLAB [109]
- XMIPP [108]
- IMAGIC [102]
- AUTO3DEM [94]
- EMCLARITY [92]
- AV3 [83]
- NOVACTF [72]
- TOM TOOLBOX [64]
- CTFFIND3 [60]
- NOVASTA [55]
- M [54]
- STOPGAP [54]
- CTFPHASEFLIP [52]
- SPARX [49]
- ISOLDE [45]
- SITUS [41]
- TOM [41]
- CRYODRGN [39]
- SIMPLE [38]
- URO [37]
- BSOFT [32]
- EMFIT [31]
- MDFF [31]
- SCIPION [31]
- APPION [30]
- EM3DR2 [28]
- CTFFIND4 [25]
- MPSA [25]
- SUBTOM [25]
- J3DR [22]
- SPIDER, APPION [22]
- I3 [21]
- O [21]
- CTFTILT [20]
- IHRSR [20]
- IMAGIC, SPIDER [20]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- JALIGN [20]
- EMAN1 [19]
- FREALIX [19]
- MOTIONCORR2 [19]
- SPIDER, FREALIGN [17]
- IMAGIC, CUSTOM, SPIDER [16]
- MULTI-PATH SA [16]
- SPIDER, IMAGIC [16]
- APPION, SPIDER, EMAN [15]
- EMAN2, SPARX [15]
- ETOMO [15]
- IMIRS [15]
- TOPAZ [15]
- EMAN1, EMAN2 [13]
- EMREADY [13]
- PHOELIX, SUPRIM [13]
- SPRING [13]
- EMAN, SPIDER [12]
- SPARX/EMAN2 [12]
- AMIRA [11]
- GAP [11]
- IMAGIC-5, SPIDER [11]
- SPIDER PACKAGE [11]
- CHIMERA, SITUS [10]
- EMAN, XMIPP [10]
- FOCUS [10]
- IMOD, BSOFT [10]
- SPIDER, EMAN [10]
- AMIRAFPM [9]
- IMOD, RAPTOR, PROTOMO [9]
- EMAN, FREALIGN [8]
- EMIRA [8]
- EMPFT EM3DR [8]
- EPU [8]
- IMAGIC, FREALIGN [8]
- MOLREP, CHIMERA [8]
- MRC [8]
- SPIDER, PACKAGE [8]
- CTFIND3 [7]
Microscope
- FEI TITAN KRIOS [28770]
- TFS KRIOS [15354]
- FEI TALOS ARCTICA [2933]
- TFS GLACIOS [1948]
- FEI TECNAI F20 [1108]
- FEI POLARA 300 [938]
- JEOL CRYO ARM 300 [713]
- FEI TECNAI SPIRIT [676]
- FEI TECNAI F30 [648]
- FEI TITAN [558]
- ZEISS LIBRA120PLUS [454]
- FEI TECNAI ARCTICA [408]
- FEI TECNAI 20 [245]
- TFS TALOS [227]
- FEI TECNAI 12 [183]
- FEI/PHILIPS CM200FEG [175]
- JEOL 3200FSC [138]
- JEOL 2200FS [131]
- JEOL CRYO ARM 200 [96]
- FEI/PHILIPS CM300FEG/T [89]
- JEOL 2100F [77]
- TFS TALOS L120C [75]
- JEOL 2010F [70]
- TFS TALOS F200C [70]
- TFS TITAN THEMIS [50]
- FEI/PHILIPS EM420 [48]
- FEI MORGAGNI [44]
- JEOL 2100 [41]
- JEOL 3200FS [35]
- JEOL 1230 [29]
- FEI/PHILIPS CM120T [27]
- JEOL 3100FFC [26]
- TFS TUNDRA [23]
- JEOL 3000SFF [21]
- JEOL 1200EXII [19]
- FEI/PHILIPS CM200T [18]
- JEOL 4000 [17]
- FEI TECNAI 10 [15]
- FEI/PHILIPS CM200FEG/ST [14]
- JEOL 4000EX [14]
- FEI/PHILIPS CM300FEG/HE [13]
- JEOL 1400 [13]
- JEOL 1200EX [12]
- JEOL 1400/HR YPS FEG [11]
- FEI/PHILIPS CM12 [8]
- SHUIMU TOTEM 300S [8]
- JEOL 100CX [7]
- JEOL 2000EX [6]
- FEI/PHILIPS CM200FEG/UT [5]
- FEI/PHILIPS CM300FEG/ST [5]
- JEOL 2010 [5]
- JEOL 2200FSC [5]
- JEOL 3100FEF [5]
- FEI TECNAI SPHERA [4]
- FEI/PHILIPS CM10 [4]
- JEOL KYOTO-3000SFF [4]
- OTHER [4]
- HITACHI EF2000 [3]
- JEOL 1000EES [3]
- JEOL 1010 [3]
- JEOL 1200 [3]
- JEOL 2010HT [2]
- JEOL 2010UHR [2]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- HITACHI H-9500SD [1]
- HITACHI H7600 [1]
- JEOL 2000EXII [1]
- JEOL 2010HC [1]
- JEOL 2011 [1]
- ZEISS LEO912 [1]
Electron Source
- FIELD EMISSION GUN [54619]
- LAB6 [1564]
- OTHER [314]
- TUNGSTEN HAIRPIN [139]
Film or detector model
- GATAN K3 6K X 4K [15467]
- GATAN K3 BIOQUANTUM 6K X 4K [11809]
- GATAN K2 SUMMIT 4K X 4K [10275]
- FEI FALCON IV 4K X 4K [6085]
- FEI FALCON III 4K X 4K [3093]
- GATAN K2 QUANTUM 4K X 4K [1853]
- TFS FALCON 4I 4K X 4K [1625]
- FEI FALCON II 4K X 4K [1177]
- GATAN ULTRASCAN 4000 4K X 4K [880]
- KODAK SO-163 FILM [781]
- GATAN K3 BIOCONTINUUM 6K X 4K [700]
- TVIPS TEMCAM-F416 4K X 4K [540]
- FEI EAGLE 4K X 4K [424]
- OTHER [340]
- FEI CETA 4K X 4K [291]
- GATAN K2 BASE 4K X 4K [209]
- DIRECT ELECTRON DE-20 5K X 3K [120]
- GENERIC GATAN 4K X 4K [90]
- GATAN ULTRASCAN 1000 2K X 2K [86]
- FEI FALCON I 4K X 4K [83]
- GENERIC CCD [69]
- TVIPS TEMCAM-F415 4K X 4K [60]
- GENERIC TVIPS 4K X 4K [57]
- FEI EAGLE 2K X 2K [52]
- DIRECT ELECTRON DE-64 8K X 8K [48]
- GATAN K2 IS 4K X 4K [41]
- DIRECT ELECTRON DE-16 4K X 4K [37]
- DIRECT ELECTRON APOLLO 4K X 4K [36]
- GENERIC GATAN [35]
- TVIPS TEMCAM-F816 8K X 8K [30]
- GATAN MULTISCAN [22]
- DIRECT ELECTRON DE-10 5K X 4K [20]
- DIRECT ELECTRON DE-12 4K X 3K [20]
- TVIPS TEMCAM-F216 2K X 2K [17]
- TVIPS TEMCAM-F224 2K X 2K [14]
- DECTRIS SINGLA 1K X 1K [12]
- GENERIC FILM [11]
- KODAK 4489 FILM [11]
- AGFA SCIENTA FILM [9]
- GENERIC TVIPS [9]
- GATAN ORIUS SC200 2K X 2K [8]
- GATAN K2 4K X 4K [7]
- GENERIC GATAN 2K X 2K [7]
- DECTRIS ELA 1K X 0.5K [6]
- GATAN ALPINE 2.3K X 3.2K [5]
- SIA 15C 3K X 3K [4]
- GENERIC TVIPS 2K X 2K [3]
- GATAN ORIUS SC1000 4K X 2.7K [2]
- GATAN ORIUS SC600 2.7K X 2.7K [2]
- GATAN ULTRASCAN 10000 10K X 10K [2]
- GENERIC IMAGE PLATES [2]
- DECTRIS ARINA 0.2K X 0.2K [1]
- GENERIC CCD 2K X 2K [1]
- PROSCAN TEM-PIV 2K X 2K [1]
External links
- PDB [52681]
- UniProt [32667]
- PDBe-Kb [30142]
- AlphaFold DB [29238]
- InterPro [25365]
- Gene Ontology [24688]
- Pfam [22890]
- ChEBI [18482]
- ChEMBL [16738]
- DrugBank [14771]
- Complex Portal [9275]
- EMPIAR [4941]
- SCOP2 [550]
- CATH [390]