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Current Database

  • EMDB [13]

Current status

  • REL [13]

Sample type

  • Sample [13]
  • Protein [9]
  • Virus [4]
  • Complex [2]
  • RNA [2]

Organism

  • Drosophila melanogaster [3]
  • Escherichia coli [2]
  • Bk polyomavirus [1]
  • Aquareovirus c [1]
  • Pyrococcus furiosus [1]
  • Aphonopelma sp. [1]
  • Enterovirus b [1]
  • Saccharomyces cerevisiae [1]
  • Homo sapiens [1]
  • Bos taurus [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [9]
  • Helical reconstruction [4]

Resolution

  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [4]
  • ≥ 12Å and < 16Å [4]
  • ≥ 20Å and < 30Å [3]

Model molecular weight

  • 100-250 kDa [2]
  • 2-5 MDa [1]
  • 5-10 MDa [1]
  • > 10 MDa [2]

Release Date

  • 2016 [2]
  • 2013 [1]
  • 2011 [4]
  • 2009 [1]
  • 2005 [1]
  • 2003 [4]

Author by name

  • Frank J [3]
  • Goldie KN [3]
  • Hoenger A [3]
  • Mandelkow E [3]
  • Muller J [3]
  • Diaz-avalos R [2]
  • Doerhoefer M [2]
  • Grassucci RA [2]
  • Hurdiss DL [2]
  • Macdonald A [2]
  • Morgan EL [2]
  • Panou MM [2]
  • Prescott EL [2]
  • Ranson NA [2]
  • Thompson RF [2]
  • Thormahlen M [2]
  • Agirrezabala X [1]
  • Alamo L [1]
  • Atanasov IC [1]
  • Augustin S [1]
  • Bartoli F [1]
  • Becker T [1]
  • Beckmann R [1]
  • Bertero MG [1]
  • Bhella D [1]
  • Brito R [1]
  • Cheng L [1]
  • Craig R [1]
  • Cramer P [1]
  • Ehrenberg M [1]
  • Evans DJ [1]
  • Fang Q [1]
  • Gawinowicz MA [1]
  • Gerdes F [1]
  • Green R [1]
  • Guerrero JR [1]
  • Hashem H [1]
  • Hashem Y [1]
  • Hellen CU [1]
  • Hellen CUT [1]
  • Kerrigan D [1]
  • Kusser AG [1]
  • Langer T [1]
  • Lea SM [1]
  • Lee S [1]
  • Lei J [1]
  • Linde J [1]
  • Lundberg U [1]
  • Naji S [1]
  • Ortiz-meoz RF [1]
  • Padron R [1]
  • Pestova TV [1]
  • Pettigrew DM [1]
  • Pinto A [1]
  • Rawat UB [1]
  • Salazar L [1]
  • Schreiner E [1]
  • Schulten K [1]
  • Sengupta J [1]
  • Shah S [1]
  • Skiniotis G [1]
  • Sulbaran G [1]
  • Tatsuta T [1]
  • Taylor D [1]
  • Thomm M [1]
  • Trabuco LG [1]
  • Tsai FT [1]
  • Tsai FTF [1]
  • Unbehaun A [1]
  • Valle M [1]
  • Vestergaard B [1]
  • Volkmann N [1]
  • Wendt TG [1]
  • Williams DT [1]
  • Wriggers W [1]
  • Zavialov AV [1]
  • Zhao F [1]
  • Zhou ZH [1]
  • Des Georges A [1]

Author by ORCID

  • Hoenger A [3]
  • Ranson NA [2]
  • Macdonald A [2]
  • Morgan EL [2]
  • Hurdiss DL [2]
  • Zavialov AV [1]
  • Vestergaard B [1]
  • Valle M [1]
  • Lea SM [1]
  • Pinto A [1]
  • Evans DJ [1]
  • Padron R [1]
  • Bertero MG [1]
  • Williams DT [1]
  • Cheng L [1]
  • Des Georges A [1]
  • Skiniotis G [1]
  • Bhella D [1]
  • Ortiz-meoz RF [1]

Journal

  • J MOL BIOL [5]
  • EMBO J [2]
  • J BIOL CHEM [2]
  • STRUCTURE [2]
  • NATURE [1]
  • NUCLEIC ACIDS RES [1]

Software

  • RELION [3]
  • SPIDER [3]
  • PHOELIX, SUPRIM [2]
  • CHIMERA [1]
  • EMAN [1]
  • IMIRS [1]
  • MDFF [1]
  • PFT2 AND EM3DR2 [1]
  • PHOELIX [1]
  • SITUS 2.3 [1]
  • UCSF CHIMERA [1]

Microscope

  • FEI POLARA 300 [3]
  • FEI/PHILIPS CM120T [3]
  • FEI TECNAI F20 [2]
  • FEI TECNAI F30 [2]
  • FEI/PHILIPS CM200FEG/ST [1]
  • JEOL 1200 [1]
  • JEOL 2010F [1]

Electron Source

  • FIELD EMISSION GUN [8]
  • LAB6 [4]
  • TUNGSTEN HAIRPIN [1]

Film or detector model

  • KODAK SO-163 FILM [7]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • TVIPS TEMCAM-F415 4K X 4K [2]
  • GENERIC GATAN 4K X 4K [1]
  • GENERIC TVIPS 4K X 4K [1]

External links

  • PDB [13]
  • AlphaFold DB [2]
  • PDBe-Kb [2]
  • UniProt [2]
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Showing 1 - 10 of 13. Page 1 of 2
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EMD-3283
Download Map
3D View
Cryo-EM structure of BK polyomavirus
CryoEM
Release date: April 27, 2016
Resolution: 7.6 Å
EM Method: Single-particle
Fitted PDBs: 5fua
Q-score: 0.151
Similar entry percentile: 62%

Hurdiss DL, Morgan EL, Thompson RF, Prescott EL, Panou MM, Macdonald A, Ranson NA

Structure (2016) 24 pp. 528-536 [ DOI: doi:10.1016/J.STR.2016.02.008 Pubmed: 26996963 ]

EMD-3284
Download Map
3D View
Cryo-EM structure of BK polyomavirus VP1 virus-like particle
CryoEM
Release date: April 27, 2016
Resolution: 9.12 Å
EM Method: Single-particle

Hurdiss DL, Morgan EL, Thompson RF, Prescott EL, Panou MM, Macdonald A, Ranson NA

Structure (2016) 24 pp. 528-536 [ DOI: doi:10.1016/J.STR.2016.02.008 Pubmed: 26996963 ]

EMD-5801
Download Map
3D View
Structure of the mammalian ribosomal pre-termination complex associated with eRF1-eRF3-GDPNP
Negative staining
CryoEM
Release date: Dec. 25, 2013
Resolution: 9.7 Å
EM Method: Single-particle
Fitted PDBs: 3j5y
Q-score: 0.117
Similar entry percentile: 73%

des Georges A, Hashem Y, Unbehaun A, Grassucci RA, Taylor D, Hellen CU, Pestova TV, Frank J

Nucleic Acids Res (2014) 42 pp. 3409-3418 [ Pubmed: 24335085 DOI: doi:10.1093/nar/gkt1279 ]

EMD-1711
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3D View
Pyrococcus furiosus RNA Polymerase
CryoEM
Release date: Sept. 30, 2011
Resolution: 13.0 Å
EM Method: Single-particle

Kusser AG, Bertero MG, Naji S, Becker T, Thomm M, Beckmann R, Cramer P

J Mol Biol (2008) 376 pp. 303-307 [ DOI: doi:10.1016/j.jmb.2007.08.066 Pubmed: 18164030 ]

EMD-1950
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3D View
3D-Structure of tarantula myosin filament obtained by cryo-electron microscopy
Negative staining
CryoEM
Release date: Sept. 2, 2011
Resolution: 20.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 3jbh
Q-score: 0.044
Similar entry percentile: 44%

Brito R, Alamo L, Lundberg U, Guerrero JR, Pinto A, Sulbaran G, Gawinowicz MA, Craig R, Padron R

J Mol Biol (2011) 414 pp. 44-61 [ DOI: doi:10.1016/j.jmb.2011.09.017 Pubmed: 21959262 ]

EMD-1849
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3D View
Cognate 70S-TC complex
CryoEM
Release date: May 6, 2011
Resolution: 8.25 Å
EM Method: Single-particle
Fitted PDBs: 4v6k
Q-score: 0.16
Similar entry percentile: 75%

Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

EMBO J (2011) 30 pp. 1497-1507 [ Pubmed: 21378755 DOI: doi:10.1038/emboj.2011.58 ]

EMD-1712
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Three-dimensional CryoEM Structure of a Membrane-Anchored AAA Protease
CryoEM
Release date: April 26, 2011
Resolution: 12.0 Å
EM Method: Single-particle

Lee S, Augustin S, Tatsuta T, Gerdes F, Langer T, Tsai FT

J Biol Chem (2011) 286 pp. 4404-4411 [ Pubmed: 21147776 DOI: doi:10.1074/jbc.M110.158741 ]

EMD-1532
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3D View
Three-dimensional structure of the Grass carp reovirus core.
CryoEM
Release date: April 1, 2009
Resolution: 9.0 Å
EM Method: Single-particle

Cheng L, Fang Q, Shah S, Atanasov IC, Zhou ZH

J Mol Biol (2008) 382 pp. 213-222 [ Pubmed: 18625243 DOI: doi:10.1016/j.jmb.2008.06.075 ]

EMD-1183
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3D View
Structural and functional insights into the interaction of echoviruses and decay-accelerating factor.
Negative staining
CryoEM
Release date: Dec. 5, 2005
Resolution: 14.0 Å
EM Method: Single-particle
Fitted PDBs: 2c8i
Q-score: 0.011
Similar entry percentile: 13%

Pettigrew DM, Williams DT, Kerrigan D, Evans DJ, Lea SM, Bhella D

J Biol Chem (2006) 281 pp. 5169-5177 [ Pubmed: 16272562 DOI: doi:10.1074/jbc.M510362200 ]

EMD-1010
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A cryo-electron microscopic study of ribosome-bound termination factor RF2.
CryoEM
Release date: Sept. 26, 2003
Resolution: 12.9 Å
EM Method: Single-particle
Fitted PDBs: 1mi6, 1mvr

Rawat UB, Zavialov AV, Sengupta J, Valle M, Grassucci RA, Linde J, Vestergaard B, Ehrenberg M, Frank J

Nature (2003) 421 pp. 87-90 [ DOI: doi:10.1038/nature01224 Pubmed: 12511960 ]

Sort by: Download
Showing 1 - 10 of 13. Page 1 of 2
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [13]

Current status

  • REL [13]

Sample type

  • Sample [13]
  • Protein [9]
  • Virus [4]
  • Complex [2]
  • RNA [2]

Organism

  • Drosophila melanogaster [3]
  • Escherichia coli [2]
  • Bk polyomavirus [1]
  • Aquareovirus c [1]
  • Pyrococcus furiosus [1]
  • Aphonopelma sp. [1]
  • Enterovirus b [1]
  • Saccharomyces cerevisiae [1]
  • Homo sapiens [1]
  • Bos taurus [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [9]
  • Helical reconstruction [4]

Resolution

  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [4]
  • ≥ 12Å and < 16Å [4]
  • ≥ 20Å and < 30Å [3]

Model molecular weight

  • 100-250 kDa [2]
  • 2-5 MDa [1]
  • 5-10 MDa [1]
  • > 10 MDa [2]

Release Date

  • 2016 [2]
  • 2013 [1]
  • 2011 [4]
  • 2009 [1]
  • 2005 [1]
  • 2003 [4]

Author by name

  • Frank J [3]
  • Goldie KN [3]
  • Hoenger A [3]
  • Mandelkow E [3]
  • Muller J [3]
  • Diaz-avalos R [2]
  • Doerhoefer M [2]
  • Grassucci RA [2]
  • Hurdiss DL [2]
  • Macdonald A [2]
  • Morgan EL [2]
  • Panou MM [2]
  • Prescott EL [2]
  • Ranson NA [2]
  • Thompson RF [2]
  • Thormahlen M [2]
  • Agirrezabala X [1]
  • Alamo L [1]
  • Atanasov IC [1]
  • Augustin S [1]
  • Bartoli F [1]
  • Becker T [1]
  • Beckmann R [1]
  • Bertero MG [1]
  • Bhella D [1]
  • Brito R [1]
  • Cheng L [1]
  • Craig R [1]
  • Cramer P [1]
  • Ehrenberg M [1]
  • Evans DJ [1]
  • Fang Q [1]
  • Gawinowicz MA [1]
  • Gerdes F [1]
  • Green R [1]
  • Guerrero JR [1]
  • Hashem H [1]
  • Hashem Y [1]
  • Hellen CU [1]
  • Hellen CUT [1]
  • Kerrigan D [1]
  • Kusser AG [1]
  • Langer T [1]
  • Lea SM [1]
  • Lee S [1]
  • Lei J [1]
  • Linde J [1]
  • Lundberg U [1]
  • Naji S [1]
  • Ortiz-meoz RF [1]
  • Padron R [1]
  • Pestova TV [1]
  • Pettigrew DM [1]
  • Pinto A [1]
  • Rawat UB [1]
  • Salazar L [1]
  • Schreiner E [1]
  • Schulten K [1]
  • Sengupta J [1]
  • Shah S [1]
  • Skiniotis G [1]
  • Sulbaran G [1]
  • Tatsuta T [1]
  • Taylor D [1]
  • Thomm M [1]
  • Trabuco LG [1]
  • Tsai FT [1]
  • Tsai FTF [1]
  • Unbehaun A [1]
  • Valle M [1]
  • Vestergaard B [1]
  • Volkmann N [1]
  • Wendt TG [1]
  • Williams DT [1]
  • Wriggers W [1]
  • Zavialov AV [1]
  • Zhao F [1]
  • Zhou ZH [1]
  • Des Georges A [1]

Author by ORCID

  • Hoenger A [3]
  • Ranson NA [2]
  • Macdonald A [2]
  • Morgan EL [2]
  • Hurdiss DL [2]
  • Zavialov AV [1]
  • Vestergaard B [1]
  • Valle M [1]
  • Lea SM [1]
  • Pinto A [1]
  • Evans DJ [1]
  • Padron R [1]
  • Bertero MG [1]
  • Williams DT [1]
  • Cheng L [1]
  • Des Georges A [1]
  • Skiniotis G [1]
  • Bhella D [1]
  • Ortiz-meoz RF [1]

Journal

  • J MOL BIOL [5]
  • EMBO J [2]
  • J BIOL CHEM [2]
  • STRUCTURE [2]
  • NATURE [1]
  • NUCLEIC ACIDS RES [1]

Software

  • RELION [3]
  • SPIDER [3]
  • PHOELIX, SUPRIM [2]
  • CHIMERA [1]
  • EMAN [1]
  • IMIRS [1]
  • MDFF [1]
  • PFT2 AND EM3DR2 [1]
  • PHOELIX [1]
  • SITUS 2.3 [1]
  • UCSF CHIMERA [1]

Microscope

  • FEI POLARA 300 [3]
  • FEI/PHILIPS CM120T [3]
  • FEI TECNAI F20 [2]
  • FEI TECNAI F30 [2]
  • FEI/PHILIPS CM200FEG/ST [1]
  • JEOL 1200 [1]
  • JEOL 2010F [1]

Electron Source

  • FIELD EMISSION GUN [8]
  • LAB6 [4]
  • TUNGSTEN HAIRPIN [1]

Film or detector model

  • KODAK SO-163 FILM [7]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • TVIPS TEMCAM-F415 4K X 4K [2]
  • GENERIC GATAN 4K X 4K [1]
  • GENERIC TVIPS 4K X 4K [1]

External links

  • PDB [13]
  • AlphaFold DB [2]
  • PDBe-Kb [2]
  • UniProt [2]