Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!
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Current Database
- EMDB [9642]
Current status
- REL [9642]
Sample type
- Protein [8882]
- Complex [8645]
- Ligand [5944]
- Cellular component [451]
- Virus [316]
- DNA [188]
- RNA [179]
- Sample [169]
- Cell [126]
- Other [34]
- Tissue [22]
Organism
- Homo sapiens [6376]
- Severe acute respiratory syndrome coronavirus [1751]
- Mus musculus [970]
- Human immunodeficiency virus 1 [503]
- Rattus norvegicus [441]
- Synthetic construct [292]
- Macaca mulatta [204]
- Lama glama [203]
- Oryctolagus cuniculus [133]
- Influenza a virus [116]
- Arabidopsis thaliana [114]
- Vicugna pacos [100]
- Bos taurus [82]
- Sus scrofa [80]
- Enterobacteria phage t4 [61]
- Human immunodeficiency virus [56]
- Severe acute respiratory syndrome coronavirus [54]
- Human coronavirus hku1 [46]
- Middle east respiratory syndrome-related coronavirus [43]
- Escherichia coli [42]
- Danio rerio [40]
- Adeno-associated virus [36]
- Severe acute respiratory syndrome coronavirus [36]
- Drosophila melanogaster [34]
- Strongylocentrotus purpuratus [32]
- Salpingoeca rosetta (strain atcc 50818 / bsb-021) [32]
- Betacoronavirus 1 [31]
- Aequorea victoria [31]
- Gallus gallus [31]
- Human cytomegalovirus [30]
- (no species) [29]
- Plasmodium falciparum [28]
- Xenopus laevis [28]
- Severe acute respiratory syndrome coronavirus [26]
- Zika virus [26]
- (no species) [24]
- Western equine encephalitis virus [24]
- Zaire ebolavirus [23]
- Escherichia coli [23]
- Monkeypox virus [22]
- Mesocricetus auratus [21]
- Lassa mammarenavirus [20]
- Epstein-barr virus (strain gd1) [19]
- Saccharomyces cerevisiae [19]
- Human immunodeficiency virus 1 [19]
- Human respiratory syncytial virus [18]
- Plasmodium falciparum [18]
- Dengue virus [17]
- Middle east respiratory syndrome-related coronavirus [17]
- Human metapneumovirus [17]
- Escherichia virus qbeta [17]
- Simian-human immunodeficiency virus [17]
- Human coronavirus hku1 [16]
- Amanita phalloides [16]
- Eastern equine encephalitis virus [15]
- Nipah virus [15]
- Dengue virus [14]
- (no species) [14]
- Chikungunya virus [14]
- Enterovirus a [14]
- Zaire ebolavirus [13]
- Influenza a virus [13]
- Caenorhabditis elegans [13]
- Camelus bactrianus [13]
- African swine fever virus [12]
- Venezuelan equine encephalitis virus [12]
- Enterovirus b [12]
- Influenza a virus [12]
- Saccharomyces cerevisiae [12]
- Macaca fascicularis [12]
- Adeno-associated dependoparvovirus a [11]
- Eastern chimpanzee simian foamy virus [11]
- Adeno-associated dependoparvovirus a [11]
- Porcine epidemic diarrhea virus [11]
- Langya virus [11]
- Human herpesvirus 8 [11]
- Human herpesvirus 3 [10]
- Lassa mammarenavirus [10]
- Coronavirus hku15 [10]
- Nipah virus [10]
- Enterovirus d [10]
- Influenza a virus [10]
- Bat coronavirus hku5 [10]
- (no species) [10]
- Venezuelan equine encephalitis virus [9]
- (no species) [9]
- Human coronavirus hku1 [9]
- Tribolium castaneum [9]
- Ovis aries [9]
- Rattus rattus [8]
- Human herpesvirus 1 [8]
- Hepacivirus c [8]
- Hepatitis b virus [7]
- Phytophthora sojae [7]
- Human respirovirus 3 [7]
- Influenza b virus [7]
- Human immunodeficiency virus 1 [7]
- Human immunodeficiency virus 2 [7]
- Murine leukemia virus [7]
- Deltainfluenzavirus influenzae [7]
EM Method
- Single-particle [9470]
- Helical reconstruction [75]
- Subtomogram averaging [69]
- Tomography [28]
Resolution
- < 2Å [23]
- ≥ 2Å and < 3Å [2175]
- ≥ 3Å and < 4Å [5168]
- ≥ 4Å and < 5Å [1010]
- ≥ 5Å and < 6Å [181]
- ≥ 6Å and < 8Å [293]
- ≥ 8Å and < 12Å [174]
- ≥ 12Å and < 16Å [105]
- ≥ 16Å and < 20Å [148]
- ≥ 20Å and < 30Å [300]
- ≥ 30Å [33]
Model molecular weight
- 0-50 kDa [110]
- 50-100 kDa [743]
- 100-250 kDa [2531]
- 250-500 kDa [2873]
- 500-1000 kDa [1138]
- 1-2 MDa [210]
- 2-5 MDa [174]
- 5-10 MDa [76]
- > 10 MDa [54]
Release Date
- 2025 [2159]
- 2024 [1760]
- 2023 [1318]
- 2022 [1399]
- 2021 [1162]
- 2020 [848]
- 2019 [323]
- 2018 [283]
- 2017 [152]
- 2016 [116]
- 2015 [54]
- 2014 [24]
- 2013 [32]
- 2012 [10]
- 2007 [2]
Author by name
- Ward AB [757]
- Wang Y [699]
- Zhang Y [590]
- Wang X [513]
- Li Y [414]
- Chen X [391]
- Zhang X [356]
- Zhang Z [334]
- Wang Q [328]
- Wang L [324]
- Wang J [316]
- Li J [310]
- Kwong PD [308]
- Li X [301]
- Wilson IA [293]
- Li Z [287]
- Cottrell CA [276]
- Sanders RW [272]
- Chen Y [253]
- Torres JL [251]
- Acharya P [245]
- Haynes BF [245]
- Liu Y [243]
- Zhang J [243]
- Burton DR [234]
- Montefiori DC [234]
- Ozorowski G [224]
- Zhao J [214]
- Wang P [210]
- Chen J [208]
- Copps J [208]
- Wang H [208]
- Xu Y [208]
- Liu S [207]
- Saunders KO [206]
- Gao Y [205]
- Liu C [204]
- Li S [203]
- Chen L [200]
- Li D [199]
- Liu L [196]
- Li W [195]
- Zhou T [193]
- Edwards RJ [192]
- Huang Y [191]
- Moore JP [191]
- Liu Z [190]
- Wang Z [187]
- Zhang B [186]
- Parks R [185]
- Chen Z [183]
- Zhao Y [183]
- Zhou Q [182]
- Zhang S [181]
- Chen Q [179]
- Yan R [174]
- Janowska K [172]
- Mascola JR [171]
- Antanasijevic A [170]
- Jiang Y [169]
- Wang S [169]
- Sewall LM [168]
- Shapiro L [167]
- Van Gils Mj [167]
- Guo Y [165]
- Zhang L [163]
- Yang W [162]
- Sun L [161]
- Henderson R [158]
- Veesler D [158]
- Yang X [155]
- Shi Y [154]
- Yang H [153]
- Wiehe K [149]
- Huang J [147]
- Sobolevsky AI [147]
- Stalls V [146]
- Zhao X [141]
- Zhou Y [141]
- Graham BS [140]
- Liu X [139]
- Mansouri K [139]
- Liu B [138]
- Tsybovsky Y [138]
- Yan RH [138]
- Crispin M [137]
- Lu Y [137]
- He J [136]
- Turner HL [135]
- Gao GF [134]
- Zhang H [134]
- Cheng Y [132]
- Huang X [130]
- Huang Z [130]
- Manne K [130]
- Yang Y [130]
- Yu Z [130]
- Guo J [126]
- Zhu X [126]
- Sok D [124]
Author by ORCID
- Ward AB [347]
- Kwong PD [251]
- Torres JL [235]
- Cottrell CA [189]
- Edwards RJ [175]
- Van Gils Mj [150]
- Copps J [149]
- Crispin M [137]
- Ozorowski G [122]
- Allen JD [118]
- Acharya P [117]
- Burton DR [113]
- Xu Y [112]
- Cheng Y [110]
- Mclellan JS [108]
- Sanders RW [107]
- Sobolevsky AI [101]
- King NP [97]
- Corti D [95]
- Park YJ [95]
- Gorman J [93]
- Xiong X [91]
- Li Y [91]
- Yan R [89]
- Nureki O [89]
- Aricescu AR [89]
- Veesler D [88]
- Li X [86]
- Bai XC [86]
- Labranche C [86]
- Gao GF [84]
- Zhao Y [83]
- Malinauskas T [82]
- Zhou Q [82]
- Zhou T [81]
- Chen X [81]
- Saunders KO [80]
- Dutzler R [79]
- Subramaniam S [79]
- Chen L [78]
- Guo J [78]
- Walls AC [78]
- Yuan M [77]
- Sempowski GD [76]
- Baker D [73]
- Hite RK [73]
- Sewall LM [72]
- Bjorkman PJ [72]
- Guo Y [71]
- Liu W [71]
- Wang X [71]
- Wang X [70]
- Haynes BF [70]
- Mansouri K [69]
- Tortorici MA [69]
- Du J [69]
- Kanekiyo M [67]
- Bangaru S [67]
- Yamashita K [67]
- Barnes CO [67]
- Sok D [66]
- Schief WR [65]
- Van Schooten J [65]
- Cerutti G [64]
- Crotty S [63]
- Gobeil SM [62]
- Perrett HR [62]
- Lu W [62]
- Moore JP [62]
- Nishizawa T [61]
- Antanasijevic A [61]
- Chang YC [60]
- Rantalainen K [60]
- Srivastava SS [60]
- Yang TJ [60]
- Yang W [59]
- Lee CH [59]
- Paknejad N [58]
- Stalls V [58]
- Pallesen J [58]
- Crowe Jr Je [57]
- Rosen LE [57]
- Guo Y [56]
- Manne K [56]
- Borgnia MJ [55]
- Henderson R [55]
- Nadezhdin KD [55]
- Locher KP [55]
- Bowen JE [55]
- Yan N [55]
- Li J [54]
- Mao Y [53]
- Wrapp D [53]
- Lee SY [53]
- Jiang D [53]
- Neuberger A [53]
- Georgeson E [52]
- Sun L [52]
- Su N [52]
- Wang Y [51]
Journal
- NAT COMMUN [1758]
- TO BE PUBLISHED [1030]
- NATURE [843]
- NAT STRUCT MOL BIOL [619]
- CELL [517]
- SCIENCE [494]
- CELL REP [446]
- BIORXIV [438]
- PNAS [362]
- SCI ADV [356]
- ELIFE [245]
- CELL RES [244]
- MOL CELL [220]
- CELL DISCOV [199]
- STRUCTURE [189]
- PLOS PATHOG [178]
- IMMUNITY [148]
- J VIROL [131]
- CELL HOST MICROBE [91]
- COMMUN BIOL [87]
- EMBO J [74]
- J BIOL CHEM [73]
- NEURON [71]
- NAT CHEM BIOL [64]
- SCI TRANSL MED [58]
- J MOL BIOL [47]
- NPJ VACCINES [40]
- SCI IMMUNOL [40]
- SIGNAL TRANSDUCT TARGET THER [40]
- ACTA CRYSTALLOGR D STRUCT BIOL [37]
- NAT MICROBIOL [34]
- PROTEIN CELL [34]
- ISCIENCE [32]
- NUCLEIC ACIDS RES [31]
- SCI REP [31]
- BLOOD [27]
- NATL SCI REV [23]
- PLOS BIOL [23]
- VIRUSES [22]
- HLIFE [20]
- EMBO REP [19]
- J EXP MED [19]
- MBIO [19]
- CELL REP MED [18]
- EMERG MICROBES INFECT [18]
- ADV SCI [16]
- BIOCHEM BIOPHYS RES COMMUN [16]
- NAT METHODS [16]
- PROTEIN SCI [16]
- LIFE SCI ALLIANCE [14]
- J STRUCT BIOL [13]
- NAT IMMUNOL [13]
- MOL THER METHODS CLIN DEV [12]
- IUCRJ [11]
- FRONT IMMUNOL [10]
- J HEPATOL [10]
- J MED CHEM [10]
- MOL PHARMACOL [10]
- NAT CARDIOVASC RES [10]
- NAT MED [10]
- NPJ VIRUSES [10]
- RES SQ [10]
- SCI BULL (BEIJING) [10]
- VIROL SIN [10]
- J STRUCT BIOL X [9]
- NAT PLANTS [9]
- PLOS ONE [9]
- SCI SIGNAL [9]
- J MED VIROL [8]
- MABS [8]
- DEV CELL [7]
- DIAN ZI XIAN WEI XUE BAO [7]
- J CELL BIOL [7]
- PLANT COMMUN. [7]
- BR.J.PHARMACOL. [6]
- CELL INSIGHT [6]
- EBIOMEDICINE [6]
- FRONT MICROBIOL [6]
- MEDCOMM (2020) [6]
- PNAS NEXUS [6]
- PROG BIOPHYS MOL BIOL [6]
- ANTIVIRAL RES [5]
- FEBS J [5]
- J CLIN INV [5]
- MICROBIOL IMMUNOL [5]
- NAT BIOTECHNOL [5]
- ACS CHEM BIOL [4]
- BIOPHYS J [4]
- CANCER DISCOV [4]
- COMMUN CHEM [4]
- J BIOMED SCI [4]
- MOL PLANT [4]
- ANGEW CHEM INT ED ENGL [3]
- AUTOPHAGY [3]
- CHIN SCI BULL [3]
- ENVIRON SCI TECHNOL. [3]
- EXP.MOL.MED. [3]
- FEBS OPEN BIO [3]
- HUM GENE THER [3]
- INT J BIOL MACROMOL [3]
Software
- CRYOSPARC [2560]
- RELION [2119]
- CTFFIND [346]
- GCTF [233]
- CISTEM [90]
- CHIMERA [55]
- FREALIGN [47]
- COOT [42]
- EMAN2, SPARX [33]
- EMAN2 [27]
- UCSF CHIMERAX [21]
- PHENIX [19]
- JSPR [18]
- WARP [18]
- UCSF CHIMERA [16]
- EMAN [15]
- IMAGIC [14]
- SPARX [14]
- AV3 [13]
- DYNAMO [12]
- ISOLDE [11]
- MATLAB [11]
- EMAN2, RELION, 1.3 [10]
- IMOD [10]
- SPARX/EMAN2 [10]
- TOM [10]
- CTFFIND3 [9]
- SPIDER [9]
- TOMO3D [8]
- CTFPHASEFLIP [7]
- EMAN, EMAN2, XMIPP [7]
- SCIPION [7]
- SPHIRE [7]
- CTFFIND3, RELION [6]
- CTFFIND4 [6]
- CTFIND3 [6]
- EMAN, SPARX [6]
- FREALIX [5]
- IMOD, EMAN2 [5]
- XMIPP [5]
- AMIRAFPM [4]
- CTFFIND4, RELION [4]
- EMAN1 [4]
- MRA/MSA [4]
- XMIPP, FREALIGN [4]
- EMAN1, EMAN2 [3]
- EMAN2, RELION [3]
- EMAN2, XMIPP [3]
- EMCLARITY [3]
- J3DR [3]
- NOVACTF [3]
- SPARX, EMAN2 [3]
- XMIPP, EMAN, EMAN2, SPARX [3]
- XMIPP, IMAGIC, SPIDER, APPION, CTFFIND3 [3]
- AMIRA [2]
- APPION, SPIDER, XMIPP, EMAN1, EMAN2 [2]
- AUTO3DEM [2]
- CHIMERA, O [2]
- EMAN2, EMAN1 [2]
- IMAGIC, RELION [2]
- IMAGIC-5, TIGRIS [2]
- IMOD, DYNAMO [2]
- MOTIONCORR2 [2]
- PYTOM [2]
- RELION1.4 [2]
- SUBTOM [2]
- TOM TOOLBOX [2]
- APPION, SPIDER, XMIPP, EMAN1 [1]
- CHIMERA, COOT [1]
- CHIMERA, SITUS [1]
- CRYOLO [1]
- CTFFIND3, EMAN2, AND, AUTO3DEM [1]
- EMAN, EMAN2 [1]
- EMAN, EMAN2, XMIPP, IMAGIC [1]
- EMAN, IMAGIC, FREALIGN [1]
- EMAN, MPSA [1]
- EMAN2, IMOD, PEET [1]
- GEFREALIGN [1]
- IHRSR, XMIPP, IMAGIC, SPIDER, APPION, CTFFIND3 [1]
- IMOD, PEET [1]
- IMOD, PEET, TOMOCTF [1]
- IN, HOUSE, SOFTWARE, RELION [1]
- JALIGN [1]
- LEGINON [1]
- O, COOT, CNS, CHIMERA, MODELLER [1]
- PEET [1]
- PRIME, EMAN2 [1]
- REFMAC [1]
- RELION, IHRSR [1]
- RELION2 [1]
- SIMPLE [1]
- SIMPLE, EMAN2 [1]
- SITUS [1]
- SPIDER, EMAN, EMAN2, IMAGIC, RELION [1]
- SPIDER, MRC, EMAN, IMAGIC4D [1]
- SPIDER, XIMPP [1]
- URO [1]
- XMIPP, EMAN, SPARX [1]
- XMIPP, RELION [1]
Microscope
- FEI TITAN KRIOS [6135]
- TFS KRIOS [1720]
- FEI TALOS ARCTICA [531]
- TFS GLACIOS [266]
- FEI TECNAI SPIRIT [199]
- FEI POLARA 300 [124]
- FEI TECNAI F20 [107]
- JEOL CRYO ARM 300 [102]
- FEI TITAN [97]
- FEI TECNAI ARCTICA [92]
- FEI TECNAI F30 [72]
- FEI TECNAI 12 [39]
- FEI/PHILIPS EM420 [38]
- FEI TECNAI 20 [23]
- TFS TALOS [15]
- TFS TALOS F200C [14]
- FEI/PHILIPS CM300FEG/T [12]
- JEOL 1230 [7]
- JEOL 2100F [7]
- JEOL 3200FSC [6]
- FEI MORGAGNI [5]
- TFS TALOS L120C [5]
- FEI TECNAI 10 [4]
- JEOL 2010 [4]
- FEI/PHILIPS CM200FEG [3]
- JEOL 2200FS [3]
- JEOL CRYO ARM 200 [3]
- OTHER [3]
- FEI TECNAI SPHERA [2]
- JEOL 1400/HR YPS FEG [2]
- JEOL 2100 [2]
- FEI/PHILIPS CM10 [1]
- JEOL 1010 [1]
- JEOL 1200EXII [1]
- JEOL 2010F [1]
- JEOL 3000SFF [1]
- TFS TITAN THEMIS [1]
Electron Source
- FIELD EMISSION GUN [9302]
- LAB6 [287]
- OTHER [29]
- TUNGSTEN HAIRPIN [24]
Film or detector model
- GATAN K3 6K X 4K [3070]
- GATAN K3 BIOQUANTUM 6K X 4K [2155]
- GATAN K2 SUMMIT 4K X 4K [1942]
- FEI FALCON IV 4K X 4K [932]
- GATAN K2 QUANTUM 4K X 4K [285]
- FEI FALCON III 4K X 4K [276]
- TVIPS TEMCAM-F416 4K X 4K [200]
- TFS FALCON 4I 4K X 4K [159]
- FEI CETA 4K X 4K [97]
- GATAN K3 BIOCONTINUUM 6K X 4K [96]
- OTHER [69]
- FEI FALCON II 4K X 4K [68]
- FEI EAGLE 4K X 4K [59]
- GATAN K2 BASE 4K X 4K [58]
- GATAN ULTRASCAN 4000 4K X 4K [54]
- GATAN K2 4K X 4K [17]
- DIRECT ELECTRON APOLLO 4K X 4K [15]
- GENERIC GATAN 4K X 4K [15]
- DIRECT ELECTRON DE-10 5K X 4K [11]
- DIRECT ELECTRON DE-20 5K X 3K [10]
- GATAN K2 IS 4K X 4K [9]
- FEI FALCON I 4K X 4K [8]
- GENERIC CCD [8]
- KODAK SO-163 FILM [8]
- GATAN ULTRASCAN 1000 2K X 2K [7]
- FEI EAGLE 2K X 2K [5]
- TVIPS TEMCAM-F415 4K X 4K [4]
- DIRECT ELECTRON DE-64 8K X 8K [3]
- DECTRIS SINGLA 1K X 1K [2]
- DIRECT ELECTRON DE-12 4K X 3K [2]
- DIRECT ELECTRON DE-16 4K X 4K [2]
- GATAN ORIUS SC200 2K X 2K [2]
- GENERIC TVIPS 4K X 4K [2]
- TVIPS TEMCAM-F224 2K X 2K [2]
- GENERIC GATAN [1]
External links
- UniProt [8336]
- PDB [7980]
- PDBe-Kb [7798]
- Pfam [7113]
- AlphaFold DB [6819]
- InterPro [6406]
- Gene Ontology [6274]
- ChEBI [5587]
- ChEMBL [5099]
- Complex Portal [3562]
- DrugBank [3160]
- EMPIAR [447]
- SCOP2 [63]
- CATH [34]
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9dan
Q-score: 0.589
Jie L, Zhang X, Bai X
To Be Published
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9dat
Q-score: 0.594
Jie L, Zhang X, Bai X
To Be Published
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9dav
Q-score: 0.581
Jie L, Zhang X, Bai X
To Be Published
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9daw
Q-score: 0.572
Jie L, Zhang X, Bai X
To Be Published
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 9dhw
Q-score: 0.467
Habib R, Solieva SO, Lin ZJ, Ghosh S, Bayruns K, Singh M, Agostino CJ, Tursi NJ, Sowers KJ, Huang J, Roark RS, Purwar M, Park Y, Ayyanathan K, Li H, Carey JW, Kim A, Park J, McCanna ME, Skelly AN, Chokkalingam N, Kriete S, Shupin N, Huynh A, Walker S, Sadeesh R, Laenger N, Du J, Cui J, Patel A, Escolano A, Kwong PD, Shapiro L, Bowman GR, Hahn BH, Shaw GM, Weiner DB, Pallesen J, Kulp DW
bioRxiv (2025) [ Pubmed: 41332666 DOI: doi:10.1101/2024.10.04.616739 ]
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 9dim
Q-score: 0.482
Habib R, Solieva SO, Lin ZJ, Ghosh S, Bayruns K, Singh M, Agostino CJ, Tursi NJ, Sowers KJ, Huang J, Roark RS, Purwar M, Park Y, Ayyanathan K, Li H, Carey JW, Kim A, Park J, McCanna ME, Skelly AN, Chokkalingam N, Kriete S, Shupin N, Huynh A, Walker S, Sadeesh R, Laenger N, Du J, Cui J, Patel A, Escolano A, Kwong PD, Shapiro L, Bowman GR, Hahn BH, Shaw GM, Weiner DB, Pallesen J, Kulp DW
bioRxiv (2025) [ Pubmed: 41332666 DOI: doi:10.1101/2024.10.04.616739 ]
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 9n1h
Q-score: 0.438
Kumar S, Jin F, Park SJ, Choi W, Keuning SI, Massimino RP, Vu S, Lu W, Du J
Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01692-5 Pubmed: 41136608 ]
Resolution: 6.74 Å
EM Method: Single-particle
Fitted PDBs: 9n1i
Q-score: 0.225
Kumar S, Jin F, Park SJ, Choi W, Keuning SI, Massimino RP, Vu S, Lu W, Du J
Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01692-5 Pubmed: 41136608 ]
Resolution: 3.91 Å
EM Method: Single-particle
Fitted PDBs: 9n1j
Q-score: 0.305
Kumar S, Jin F, Park SJ, Choi W, Keuning SI, Massimino RP, Vu S, Lu W, Du J
Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01692-5 Pubmed: 41136608 ]
Resolution: 3.68 Å
EM Method: Single-particle
Fitted PDBs: 9n1k
Q-score: 0.381
Kumar S, Jin F, Park SJ, Choi W, Keuning SI, Massimino RP, Vu S, Lu W, Du J
Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01692-5 Pubmed: 41136608 ]
Filter By
Current Database
- EMDB [9642]
Current status
- REL [9642]
Sample type
- Protein [8882]
- Complex [8645]
- Ligand [5944]
- Cellular component [451]
- Virus [316]
- DNA [188]
- RNA [179]
- Sample [169]
- Cell [126]
- Other [34]
- Tissue [22]
Organism
- Homo sapiens [6376]
- Severe acute respiratory syndrome coronavirus [1751]
- Mus musculus [970]
- Human immunodeficiency virus 1 [503]
- Rattus norvegicus [441]
- Synthetic construct [292]
- Macaca mulatta [204]
- Lama glama [203]
- Oryctolagus cuniculus [133]
- Influenza a virus [116]
- Arabidopsis thaliana [114]
- Vicugna pacos [100]
- Bos taurus [82]
- Sus scrofa [80]
- Enterobacteria phage t4 [61]
- Human immunodeficiency virus [56]
- Severe acute respiratory syndrome coronavirus [54]
- Human coronavirus hku1 [46]
- Middle east respiratory syndrome-related coronavirus [43]
- Escherichia coli [42]
- Danio rerio [40]
- Adeno-associated virus [36]
- Severe acute respiratory syndrome coronavirus [36]
- Drosophila melanogaster [34]
- Strongylocentrotus purpuratus [32]
- Salpingoeca rosetta (strain atcc 50818 / bsb-021) [32]
- Betacoronavirus 1 [31]
- Aequorea victoria [31]
- Gallus gallus [31]
- Human cytomegalovirus [30]
- (no species) [29]
- Plasmodium falciparum [28]
- Xenopus laevis [28]
- Severe acute respiratory syndrome coronavirus [26]
- Zika virus [26]
- (no species) [24]
- Western equine encephalitis virus [24]
- Zaire ebolavirus [23]
- Escherichia coli [23]
- Monkeypox virus [22]
- Mesocricetus auratus [21]
- Lassa mammarenavirus [20]
- Epstein-barr virus (strain gd1) [19]
- Saccharomyces cerevisiae [19]
- Human immunodeficiency virus 1 [19]
- Human respiratory syncytial virus [18]
- Plasmodium falciparum [18]
- Dengue virus [17]
- Middle east respiratory syndrome-related coronavirus [17]
- Human metapneumovirus [17]
- Escherichia virus qbeta [17]
- Simian-human immunodeficiency virus [17]
- Human coronavirus hku1 [16]
- Amanita phalloides [16]
- Eastern equine encephalitis virus [15]
- Nipah virus [15]
- Dengue virus [14]
- (no species) [14]
- Chikungunya virus [14]
- Enterovirus a [14]
- Zaire ebolavirus [13]
- Influenza a virus [13]
- Caenorhabditis elegans [13]
- Camelus bactrianus [13]
- African swine fever virus [12]
- Venezuelan equine encephalitis virus [12]
- Enterovirus b [12]
- Influenza a virus [12]
- Saccharomyces cerevisiae [12]
- Macaca fascicularis [12]
- Adeno-associated dependoparvovirus a [11]
- Eastern chimpanzee simian foamy virus [11]
- Adeno-associated dependoparvovirus a [11]
- Porcine epidemic diarrhea virus [11]
- Langya virus [11]
- Human herpesvirus 8 [11]
- Human herpesvirus 3 [10]
- Lassa mammarenavirus [10]
- Coronavirus hku15 [10]
- Nipah virus [10]
- Enterovirus d [10]
- Influenza a virus [10]
- Bat coronavirus hku5 [10]
- (no species) [10]
- Venezuelan equine encephalitis virus [9]
- (no species) [9]
- Human coronavirus hku1 [9]
- Tribolium castaneum [9]
- Ovis aries [9]
- Rattus rattus [8]
- Human herpesvirus 1 [8]
- Hepacivirus c [8]
- Hepatitis b virus [7]
- Phytophthora sojae [7]
- Human respirovirus 3 [7]
- Influenza b virus [7]
- Human immunodeficiency virus 1 [7]
- Human immunodeficiency virus 2 [7]
- Murine leukemia virus [7]
- Deltainfluenzavirus influenzae [7]
EM Method
- Single-particle [9470]
- Helical reconstruction [75]
- Subtomogram averaging [69]
- Tomography [28]
Resolution
- < 2Å [23]
- ≥ 2Å and < 3Å [2175]
- ≥ 3Å and < 4Å [5168]
- ≥ 4Å and < 5Å [1010]
- ≥ 5Å and < 6Å [181]
- ≥ 6Å and < 8Å [293]
- ≥ 8Å and < 12Å [174]
- ≥ 12Å and < 16Å [105]
- ≥ 16Å and < 20Å [148]
- ≥ 20Å and < 30Å [300]
- ≥ 30Å [33]
Model molecular weight
- 0-50 kDa [110]
- 50-100 kDa [743]
- 100-250 kDa [2531]
- 250-500 kDa [2873]
- 500-1000 kDa [1138]
- 1-2 MDa [210]
- 2-5 MDa [174]
- 5-10 MDa [76]
- > 10 MDa [54]
Release Date
- 2025 [2159]
- 2024 [1760]
- 2023 [1318]
- 2022 [1399]
- 2021 [1162]
- 2020 [848]
- 2019 [323]
- 2018 [283]
- 2017 [152]
- 2016 [116]
- 2015 [54]
- 2014 [24]
- 2013 [32]
- 2012 [10]
- 2007 [2]
Author by name
- Ward AB [757]
- Wang Y [699]
- Zhang Y [590]
- Wang X [513]
- Li Y [414]
- Chen X [391]
- Zhang X [356]
- Zhang Z [334]
- Wang Q [328]
- Wang L [324]
- Wang J [316]
- Li J [310]
- Kwong PD [308]
- Li X [301]
- Wilson IA [293]
- Li Z [287]
- Cottrell CA [276]
- Sanders RW [272]
- Chen Y [253]
- Torres JL [251]
- Acharya P [245]
- Haynes BF [245]
- Liu Y [243]
- Zhang J [243]
- Burton DR [234]
- Montefiori DC [234]
- Ozorowski G [224]
- Zhao J [214]
- Wang P [210]
- Chen J [208]
- Copps J [208]
- Wang H [208]
- Xu Y [208]
- Liu S [207]
- Saunders KO [206]
- Gao Y [205]
- Liu C [204]
- Li S [203]
- Chen L [200]
- Li D [199]
- Liu L [196]
- Li W [195]
- Zhou T [193]
- Edwards RJ [192]
- Huang Y [191]
- Moore JP [191]
- Liu Z [190]
- Wang Z [187]
- Zhang B [186]
- Parks R [185]
- Chen Z [183]
- Zhao Y [183]
- Zhou Q [182]
- Zhang S [181]
- Chen Q [179]
- Yan R [174]
- Janowska K [172]
- Mascola JR [171]
- Antanasijevic A [170]
- Jiang Y [169]
- Wang S [169]
- Sewall LM [168]
- Shapiro L [167]
- Van Gils Mj [167]
- Guo Y [165]
- Zhang L [163]
- Yang W [162]
- Sun L [161]
- Henderson R [158]
- Veesler D [158]
- Yang X [155]
- Shi Y [154]
- Yang H [153]
- Wiehe K [149]
- Huang J [147]
- Sobolevsky AI [147]
- Stalls V [146]
- Zhao X [141]
- Zhou Y [141]
- Graham BS [140]
- Liu X [139]
- Mansouri K [139]
- Liu B [138]
- Tsybovsky Y [138]
- Yan RH [138]
- Crispin M [137]
- Lu Y [137]
- He J [136]
- Turner HL [135]
- Gao GF [134]
- Zhang H [134]
- Cheng Y [132]
- Huang X [130]
- Huang Z [130]
- Manne K [130]
- Yang Y [130]
- Yu Z [130]
- Guo J [126]
- Zhu X [126]
- Sok D [124]
Author by ORCID
- Ward AB [347]
- Kwong PD [251]
- Torres JL [235]
- Cottrell CA [189]
- Edwards RJ [175]
- Van Gils Mj [150]
- Copps J [149]
- Crispin M [137]
- Ozorowski G [122]
- Allen JD [118]
- Acharya P [117]
- Burton DR [113]
- Xu Y [112]
- Cheng Y [110]
- Mclellan JS [108]
- Sanders RW [107]
- Sobolevsky AI [101]
- King NP [97]
- Corti D [95]
- Park YJ [95]
- Gorman J [93]
- Xiong X [91]
- Li Y [91]
- Yan R [89]
- Nureki O [89]
- Aricescu AR [89]
- Veesler D [88]
- Li X [86]
- Bai XC [86]
- Labranche C [86]
- Gao GF [84]
- Zhao Y [83]
- Malinauskas T [82]
- Zhou Q [82]
- Zhou T [81]
- Chen X [81]
- Saunders KO [80]
- Dutzler R [79]
- Subramaniam S [79]
- Chen L [78]
- Guo J [78]
- Walls AC [78]
- Yuan M [77]
- Sempowski GD [76]
- Baker D [73]
- Hite RK [73]
- Sewall LM [72]
- Bjorkman PJ [72]
- Guo Y [71]
- Liu W [71]
- Wang X [71]
- Wang X [70]
- Haynes BF [70]
- Mansouri K [69]
- Tortorici MA [69]
- Du J [69]
- Kanekiyo M [67]
- Bangaru S [67]
- Yamashita K [67]
- Barnes CO [67]
- Sok D [66]
- Schief WR [65]
- Van Schooten J [65]
- Cerutti G [64]
- Crotty S [63]
- Gobeil SM [62]
- Perrett HR [62]
- Lu W [62]
- Moore JP [62]
- Nishizawa T [61]
- Antanasijevic A [61]
- Chang YC [60]
- Rantalainen K [60]
- Srivastava SS [60]
- Yang TJ [60]
- Yang W [59]
- Lee CH [59]
- Paknejad N [58]
- Stalls V [58]
- Pallesen J [58]
- Crowe Jr Je [57]
- Rosen LE [57]
- Guo Y [56]
- Manne K [56]
- Borgnia MJ [55]
- Henderson R [55]
- Nadezhdin KD [55]
- Locher KP [55]
- Bowen JE [55]
- Yan N [55]
- Li J [54]
- Mao Y [53]
- Wrapp D [53]
- Lee SY [53]
- Jiang D [53]
- Neuberger A [53]
- Georgeson E [52]
- Sun L [52]
- Su N [52]
- Wang Y [51]
Journal
- NAT COMMUN [1758]
- TO BE PUBLISHED [1030]
- NATURE [843]
- NAT STRUCT MOL BIOL [619]
- CELL [517]
- SCIENCE [494]
- CELL REP [446]
- BIORXIV [438]
- PNAS [362]
- SCI ADV [356]
- ELIFE [245]
- CELL RES [244]
- MOL CELL [220]
- CELL DISCOV [199]
- STRUCTURE [189]
- PLOS PATHOG [178]
- IMMUNITY [148]
- J VIROL [131]
- CELL HOST MICROBE [91]
- COMMUN BIOL [87]
- EMBO J [74]
- J BIOL CHEM [73]
- NEURON [71]
- NAT CHEM BIOL [64]
- SCI TRANSL MED [58]
- J MOL BIOL [47]
- NPJ VACCINES [40]
- SCI IMMUNOL [40]
- SIGNAL TRANSDUCT TARGET THER [40]
- ACTA CRYSTALLOGR D STRUCT BIOL [37]
- NAT MICROBIOL [34]
- PROTEIN CELL [34]
- ISCIENCE [32]
- NUCLEIC ACIDS RES [31]
- SCI REP [31]
- BLOOD [27]
- NATL SCI REV [23]
- PLOS BIOL [23]
- VIRUSES [22]
- HLIFE [20]
- EMBO REP [19]
- J EXP MED [19]
- MBIO [19]
- CELL REP MED [18]
- EMERG MICROBES INFECT [18]
- ADV SCI [16]
- BIOCHEM BIOPHYS RES COMMUN [16]
- NAT METHODS [16]
- PROTEIN SCI [16]
- LIFE SCI ALLIANCE [14]
- J STRUCT BIOL [13]
- NAT IMMUNOL [13]
- MOL THER METHODS CLIN DEV [12]
- IUCRJ [11]
- FRONT IMMUNOL [10]
- J HEPATOL [10]
- J MED CHEM [10]
- MOL PHARMACOL [10]
- NAT CARDIOVASC RES [10]
- NAT MED [10]
- NPJ VIRUSES [10]
- RES SQ [10]
- SCI BULL (BEIJING) [10]
- VIROL SIN [10]
- J STRUCT BIOL X [9]
- NAT PLANTS [9]
- PLOS ONE [9]
- SCI SIGNAL [9]
- J MED VIROL [8]
- MABS [8]
- DEV CELL [7]
- DIAN ZI XIAN WEI XUE BAO [7]
- J CELL BIOL [7]
- PLANT COMMUN. [7]
- BR.J.PHARMACOL. [6]
- CELL INSIGHT [6]
- EBIOMEDICINE [6]
- FRONT MICROBIOL [6]
- MEDCOMM (2020) [6]
- PNAS NEXUS [6]
- PROG BIOPHYS MOL BIOL [6]
- ANTIVIRAL RES [5]
- FEBS J [5]
- J CLIN INV [5]
- MICROBIOL IMMUNOL [5]
- NAT BIOTECHNOL [5]
- ACS CHEM BIOL [4]
- BIOPHYS J [4]
- CANCER DISCOV [4]
- COMMUN CHEM [4]
- J BIOMED SCI [4]
- MOL PLANT [4]
- ANGEW CHEM INT ED ENGL [3]
- AUTOPHAGY [3]
- CHIN SCI BULL [3]
- ENVIRON SCI TECHNOL. [3]
- EXP.MOL.MED. [3]
- FEBS OPEN BIO [3]
- HUM GENE THER [3]
- INT J BIOL MACROMOL [3]
Software
- CRYOSPARC [2560]
- RELION [2119]
- CTFFIND [346]
- GCTF [233]
- CISTEM [90]
- CHIMERA [55]
- FREALIGN [47]
- COOT [42]
- EMAN2, SPARX [33]
- EMAN2 [27]
- UCSF CHIMERAX [21]
- PHENIX [19]
- JSPR [18]
- WARP [18]
- UCSF CHIMERA [16]
- EMAN [15]
- IMAGIC [14]
- SPARX [14]
- AV3 [13]
- DYNAMO [12]
- ISOLDE [11]
- MATLAB [11]
- EMAN2, RELION, 1.3 [10]
- IMOD [10]
- SPARX/EMAN2 [10]
- TOM [10]
- CTFFIND3 [9]
- SPIDER [9]
- TOMO3D [8]
- CTFPHASEFLIP [7]
- EMAN, EMAN2, XMIPP [7]
- SCIPION [7]
- SPHIRE [7]
- CTFFIND3, RELION [6]
- CTFFIND4 [6]
- CTFIND3 [6]
- EMAN, SPARX [6]
- FREALIX [5]
- IMOD, EMAN2 [5]
- XMIPP [5]
- AMIRAFPM [4]
- CTFFIND4, RELION [4]
- EMAN1 [4]
- MRA/MSA [4]
- XMIPP, FREALIGN [4]
- EMAN1, EMAN2 [3]
- EMAN2, RELION [3]
- EMAN2, XMIPP [3]
- EMCLARITY [3]
- J3DR [3]
- NOVACTF [3]
- SPARX, EMAN2 [3]
- XMIPP, EMAN, EMAN2, SPARX [3]
- XMIPP, IMAGIC, SPIDER, APPION, CTFFIND3 [3]
- AMIRA [2]
- APPION, SPIDER, XMIPP, EMAN1, EMAN2 [2]
- AUTO3DEM [2]
- CHIMERA, O [2]
- EMAN2, EMAN1 [2]
- IMAGIC, RELION [2]
- IMAGIC-5, TIGRIS [2]
- IMOD, DYNAMO [2]
- MOTIONCORR2 [2]
- PYTOM [2]
- RELION1.4 [2]
- SUBTOM [2]
- TOM TOOLBOX [2]
- APPION, SPIDER, XMIPP, EMAN1 [1]
- CHIMERA, COOT [1]
- CHIMERA, SITUS [1]
- CRYOLO [1]
- CTFFIND3, EMAN2, AND, AUTO3DEM [1]
- EMAN, EMAN2 [1]
- EMAN, EMAN2, XMIPP, IMAGIC [1]
- EMAN, IMAGIC, FREALIGN [1]
- EMAN, MPSA [1]
- EMAN2, IMOD, PEET [1]
- GEFREALIGN [1]
- IHRSR, XMIPP, IMAGIC, SPIDER, APPION, CTFFIND3 [1]
- IMOD, PEET [1]
- IMOD, PEET, TOMOCTF [1]
- IN, HOUSE, SOFTWARE, RELION [1]
- JALIGN [1]
- LEGINON [1]
- O, COOT, CNS, CHIMERA, MODELLER [1]
- PEET [1]
- PRIME, EMAN2 [1]
- REFMAC [1]
- RELION, IHRSR [1]
- RELION2 [1]
- SIMPLE [1]
- SIMPLE, EMAN2 [1]
- SITUS [1]
- SPIDER, EMAN, EMAN2, IMAGIC, RELION [1]
- SPIDER, MRC, EMAN, IMAGIC4D [1]
- SPIDER, XIMPP [1]
- URO [1]
- XMIPP, EMAN, SPARX [1]
- XMIPP, RELION [1]
Microscope
- FEI TITAN KRIOS [6135]
- TFS KRIOS [1720]
- FEI TALOS ARCTICA [531]
- TFS GLACIOS [266]
- FEI TECNAI SPIRIT [199]
- FEI POLARA 300 [124]
- FEI TECNAI F20 [107]
- JEOL CRYO ARM 300 [102]
- FEI TITAN [97]
- FEI TECNAI ARCTICA [92]
- FEI TECNAI F30 [72]
- FEI TECNAI 12 [39]
- FEI/PHILIPS EM420 [38]
- FEI TECNAI 20 [23]
- TFS TALOS [15]
- TFS TALOS F200C [14]
- FEI/PHILIPS CM300FEG/T [12]
- JEOL 1230 [7]
- JEOL 2100F [7]
- JEOL 3200FSC [6]
- FEI MORGAGNI [5]
- TFS TALOS L120C [5]
- FEI TECNAI 10 [4]
- JEOL 2010 [4]
- FEI/PHILIPS CM200FEG [3]
- JEOL 2200FS [3]
- JEOL CRYO ARM 200 [3]
- OTHER [3]
- FEI TECNAI SPHERA [2]
- JEOL 1400/HR YPS FEG [2]
- JEOL 2100 [2]
- FEI/PHILIPS CM10 [1]
- JEOL 1010 [1]
- JEOL 1200EXII [1]
- JEOL 2010F [1]
- JEOL 3000SFF [1]
- TFS TITAN THEMIS [1]
Electron Source
- FIELD EMISSION GUN [9302]
- LAB6 [287]
- OTHER [29]
- TUNGSTEN HAIRPIN [24]
Film or detector model
- GATAN K3 6K X 4K [3070]
- GATAN K3 BIOQUANTUM 6K X 4K [2155]
- GATAN K2 SUMMIT 4K X 4K [1942]
- FEI FALCON IV 4K X 4K [932]
- GATAN K2 QUANTUM 4K X 4K [285]
- FEI FALCON III 4K X 4K [276]
- TVIPS TEMCAM-F416 4K X 4K [200]
- TFS FALCON 4I 4K X 4K [159]
- FEI CETA 4K X 4K [97]
- GATAN K3 BIOCONTINUUM 6K X 4K [96]
- OTHER [69]
- FEI FALCON II 4K X 4K [68]
- FEI EAGLE 4K X 4K [59]
- GATAN K2 BASE 4K X 4K [58]
- GATAN ULTRASCAN 4000 4K X 4K [54]
- GATAN K2 4K X 4K [17]
- DIRECT ELECTRON APOLLO 4K X 4K [15]
- GENERIC GATAN 4K X 4K [15]
- DIRECT ELECTRON DE-10 5K X 4K [11]
- DIRECT ELECTRON DE-20 5K X 3K [10]
- GATAN K2 IS 4K X 4K [9]
- FEI FALCON I 4K X 4K [8]
- GENERIC CCD [8]
- KODAK SO-163 FILM [8]
- GATAN ULTRASCAN 1000 2K X 2K [7]
- FEI EAGLE 2K X 2K [5]
- TVIPS TEMCAM-F415 4K X 4K [4]
- DIRECT ELECTRON DE-64 8K X 8K [3]
- DECTRIS SINGLA 1K X 1K [2]
- DIRECT ELECTRON DE-12 4K X 3K [2]
- DIRECT ELECTRON DE-16 4K X 4K [2]
- GATAN ORIUS SC200 2K X 2K [2]
- GENERIC TVIPS 4K X 4K [2]
- TVIPS TEMCAM-F224 2K X 2K [2]
- GENERIC GATAN [1]
External links
- UniProt [8336]
- PDB [7980]
- PDBe-Kb [7798]
- Pfam [7113]
- AlphaFold DB [6819]
- InterPro [6406]
- Gene Ontology [6274]
- ChEBI [5587]
- ChEMBL [5099]
- Complex Portal [3562]
- DrugBank [3160]
- EMPIAR [447]
- SCOP2 [63]
- CATH [34]