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natural_source_ncbi_code:"99287"

Filter By

Current Database

  • EMDB [62]

Current status

  • REL [62]

Sample type

  • Protein [60]
  • Complex [56]
  • Ligand [9]
  • Cellular component [4]
  • Sample [2]
  • Cell [1]

Organism

  • Salmonella enterica [62]
  • Salmonella enterica [4]
  • Mus musculus [2]
  • Salmonella enterica [2]
  • Salmonella enterica [1]
  • Salmonella enterica [1]
  • Escherichia coli [1]
  • Gallus gallus [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [57]
  • Helical reconstruction [5]

Resolution

  • ≥ 2Å and < 3Å [16]
  • ≥ 3Å and < 4Å [31]
  • ≥ 4Å and < 5Å [9]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [2]
  • ≥ 16Å and < 20Å [2]

Model molecular weight

  • 0-50 kDa [3]
  • 50-100 kDa [1]
  • 100-250 kDa [10]
  • 250-500 kDa [6]
  • 500-1000 kDa [6]
  • 1-2 MDa [10]
  • 2-5 MDa [15]
  • 5-10 MDa [7]
  • > 10 MDa [2]

Release Date

  • 2025 [9]
  • 2024 [26]
  • 2023 [1]
  • 2022 [3]
  • 2021 [16]
  • 2019 [3]
  • 2018 [1]
  • 2017 [1]
  • 2009 [2]

Author by name

  • Tan J [31]
  • Tan JX [31]
  • Zhou Y [31]
  • Zhu Y [31]
  • Zhang L [23]
  • Han S [21]
  • Zhou X [21]
  • Zhu YQ [21]
  • Chang S [10]
  • Chang SH [10]
  • Gao H [10]
  • Liang H [10]
  • Wang T [10]
  • Wang X [10]
  • Wu H [10]
  • Xu C [10]
  • Zhang X [10]
  • Minamino T [9]
  • Miyata T [9]
  • Namba K [9]
  • Kinoshita M [8]
  • Makino F [8]
  • Imada K [7]
  • Wang J [4]
  • Ansell TB [3]
  • Ashraf KU [3]
  • Bunoro-batista M [3]
  • Firlar E [3]
  • Gao X [3]
  • Hughes KT [3]
  • Kaelber JT [3]
  • Liu A [3]
  • Marlovits T [3]
  • Marlovits TC [3]
  • Petrou VI [3]
  • Punetha A [3]
  • Rosario-garrido S [3]
  • Stansfeld PJ [3]
  • Wald J [3]
  • Xu J [3]
  • Xu JH [3]
  • Zhang Y [3]
  • Zhang YQ [3]
  • Berry RM [2]
  • Caesar JJE [2]
  • Cheng XQ [2]
  • Chevance FFV [2]
  • Deme JC [2]
  • Fahrenkamp D [2]
  • Furlong E [2]
  • Furlong EJ [2]
  • Goessweiner-mohr N [2]
  • Jiang WX [2]
  • Johnson S [2]
  • Kato T [2]
  • Kotov V [2]
  • Lea SM [2]
  • Ma LX [2]
  • Miletic S [2]
  • Nord AL [2]
  • Orlova EV [2]
  • Pantel M [2]
  • Remaut H [2]
  • Salih O [2]
  • Vesper O [2]
  • Waksman G [2]
  • Xing Q [2]
  • Aizawa SI [1]
  • Atkinson CE [1]
  • Beeby M [1]
  • Berbon M [1]
  • Brett Finlay B [1]
  • Calcraft T [1]
  • Cao J [1]
  • Chai J [1]
  • Chevance FF [1]
  • Deng W [1]
  • Desrosiers DC [1]
  • Dong X [1]
  • Egelman EH [1]
  • Ellenberg I [1]
  • Faix J [1]
  • Fujii T [1]
  • Galan JE [1]
  • Gonzalez-rodriguez N [1]
  • Grabe GJ [1]
  • Guo EZ [1]
  • Habenstein B [1]
  • Han Z [1]
  • Hennell James R [1]
  • Hiraoka KD [1]
  • Holden DW [1]
  • Hong C [1]
  • Hu J [1]
  • Hu Z [1]
  • Kawamoto A [1]
  • Kudryashov DS [1]
  • Kudryashova E [1]
  • Lagercrantz S [1]
  • Lin G [1]

Author by ORCID

  • Zhou Y [21]
  • Zhu Y [21]
  • Gao H [10]
  • Namba K [9]
  • Minamino T [8]
  • Kinoshita M [7]
  • Imada K [7]
  • Gao X [3]
  • Makino F [3]
  • Hughes KT [2]
  • Marlovits TC [2]
  • Deme JC [2]
  • Lea SM [2]
  • Berry RM [2]
  • Wald J [2]
  • Miyata T [2]
  • Zhang L [2]
  • Johnson S [2]
  • Furlong EJ [2]
  • Remaut H [2]
  • Xing Q [2]
  • Salih O [2]
  • Orlova EV [2]
  • Sui SF [1]
  • Runyan LA [1]
  • Matsunami H [1]
  • Gonzalez-rodriguez N [1]
  • Loquet A [1]
  • Chai J [1]
  • Marlovits T [1]
  • Wolf M [1]
  • Hennell James R [1]
  • Cao J [1]
  • Grabe GJ [1]
  • Waraich K [1]
  • Yu XJ [1]
  • Nans A [1]
  • Strynadka NCJ [1]
  • Paidimuddala B [1]
  • Hu Z [1]
  • Thuenauer R [1]
  • Calcraft T [1]
  • Tolchard J [1]
  • Galan JE [1]
  • Goessweiner-mohr N [1]
  • Rouse SL [1]
  • Yuan B [1]
  • Kawamoto A [1]
  • Kato T [1]
  • Matthews-palmer TRS [1]
  • Faix J [1]
  • Habenstein B [1]
  • Scholz J [1]

Journal

  • CELL RES [22]
  • CELL [10]
  • COMMUN BIOL [5]
  • NAT COMMUN [4]
  • BIORXIV [3]
  • MICROBIOL SPECTR [3]
  • NAT MICROBIOL [3]
  • TO BE PUBLISHED [3]
  • J MOL BIOL [2]
  • SCI ADV [2]
  • J STRUCT BIOL [1]
  • NAT STRUCT MOL BIOL [1]
  • PLOS BIOL [1]
  • PNAS [1]
  • STRUCTURE [1]

Software

  • CRYOSPARC [27]
  • RELION [9]
  • UCSF CHIMERA [6]
  • IMAGIC [2]
  • URO [2]
  • CISTEM [1]
  • COOT [1]

Microscope

  • FEI TITAN KRIOS [41]
  • JEOL CRYO ARM 300 [7]
  • TFS KRIOS [5]
  • FEI TALOS ARCTICA [3]
  • FEI TITAN [3]
  • FEI TECNAI 12 [2]
  • JEOL 3200FSC [1]

Electron Source

  • FIELD EMISSION GUN [60]
  • TUNGSTEN HAIRPIN [2]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [24]
  • GATAN K3 6K X 4K [17]
  • FEI FALCON IV 4K X 4K [11]
  • GATAN K3 BIOQUANTUM 6K X 4K [5]
  • KODAK SO-163 FILM [2]
  • FEI FALCON II 4K X 4K [1]
  • FEI FALCON III 4K X 4K [1]
  • TVIPS TEMCAM-F415 4K X 4K [1]

External links

  • PDB [60]
  • AlphaFold DB [58]
  • UniProt [58]
  • PDBe-Kb [57]
  • Pfam [57]
  • Gene Ontology [56]
  • InterPro [56]
  • ChEBI [9]
  • ChEMBL [8]
  • DrugBank [8]
  • EMPIAR [4]
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Showing 1 - 10 of 62. Page 1 of 7
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EMD-61993
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3D View
Structure of the Salmonella flagellar FliPQR complex reconstituted in the peptidisc
Release date: Aug. 6, 2025
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9k29
Q-score: 0.493

Kinoshita M, Miyata T, Makino F, Imada K, Namba K, Minamino T

PNAS (2025) 122 pp. e2507221122-e2507221122 [ DOI: doi:10.1073/pnas.2507221122 Pubmed: 40833400 ]

EMD-43617
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Raw data
EMPIAR-11924
Cryo-EM Structure of the Glycosyltransferase ArnC from Salmonella enterica in the Apo State Determined on Talos Arctica microscope
Release date: Feb. 5, 2025
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 8vxh
Q-score: 0.573

Ashraf KU, Bunoro-Batista M, Ansell TB, Punetha A, Rosario-Garrido S, Firlar E, Kaelber JT, Stansfeld PJ, Petrou VI

bioRxiv (2025) [ DOI: doi:10.1101/2025.01.29.634835 Pubmed: 39974898 ]

EMD-43812
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3D View
Raw data
EMPIAR-11987
Cryo-EM Structure of the Glycosyltransferase ArnC from Salmonella enterica in the UDP-bound State Determined on Talos Arctica microscope
Release date: Feb. 5, 2025
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 9asc
Q-score: 0.5

Ashraf KU, Bunoro-Batista M, Ansell TB, Punetha A, Rosario-Garrido S, Firlar E, Kaelber JT, Stansfeld PJ, Petrou VI

bioRxiv (2025) [ DOI: doi:10.1101/2025.01.29.634835 Pubmed: 39974898 ]

EMD-44302
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Raw data
EMPIAR-12002
Cryo-EM Structure of the Glycosyltransferase ArnC from Salmonella enterica in the Apo State Determined on Krios microscope
Release date: Feb. 5, 2025
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 9b77
Q-score: 0.599

Ashraf KU, Bunoro-Batista M, Ansell TB, Punetha A, Rosario-Garrido S, Firlar E, Kaelber JT, Stansfeld PJ, Petrou VI

bioRxiv (2025) [ DOI: doi:10.1101/2025.01.29.634835 Pubmed: 39974898 ]

EMD-60007
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Structure of the Salmonella flagellar MS-ring with C11 symmetry applied
Release date: Jan. 1, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8zds
Q-score: 0.43

Kinoshita M, Makino F, Miyata T, Imada K, Namba K, Minamino T

Commun Biol (2025) 8 pp. 61-61 [ Pubmed: 39820129 DOI: doi:10.1038/s42003-025-07485-2 ]

EMD-60008
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Structure of the RBM3 ring of Salmonella flagellar MS-ring protein FliF with C33 symmetry applied
Release date: Jan. 1, 2025
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8zdt
Q-score: 0.629

Kinoshita M, Makino F, Miyata T, Imada K, Namba K, Minamino T

Commun Biol (2025) 8 pp. 61-61 [ Pubmed: 39820129 DOI: doi:10.1038/s42003-025-07485-2 ]

EMD-60009
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Structure of the RBM3 ring of Salmonella flagellar MS-ring protein FliF with C34 symmetry applied
Release date: Jan. 1, 2025
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8zdu
Q-score: 0.603

Kinoshita M, Makino F, Miyata T, Imada K, Namba K, Minamino T

Commun Biol (2025) 8 pp. 61-61 [ Pubmed: 39820129 DOI: doi:10.1038/s42003-025-07485-2 ]

EMD-62210
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Structure of the 34-mer RBM3 ring of Salmonella flagellar MS-ring protein FliF with C1 symmetry applied
Release date: Jan. 1, 2025
Resolution: 3.6 Å
EM Method: Single-particle

Kinoshita M, Makino F, Miyata T, Imada K, Namba K, Minamino T

Commun Biol (2025) 8 pp. 61-61 [ Pubmed: 39820129 DOI: doi:10.1038/s42003-025-07485-2 ]

EMD-62211
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Structure of the 33-mer RBM3 ring of Salmonella flagellar MS-ring protein FliF with C1 symmetry applied
Release date: Jan. 1, 2025
Resolution: 4.2 Å
EM Method: Single-particle

Kinoshita M, Makino F, Miyata T, Imada K, Namba K, Minamino T

Commun Biol (2025) 8 pp. 61-61 [ Pubmed: 39820129 DOI: doi:10.1038/s42003-025-07485-2 ]

EMD-38098
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CryoEM structure of the trifunctional NAD biosynthesis/regulator protein NadR in complex with NAD
Release date: Dec. 4, 2024
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 8x7f
Q-score: 0.431

Jiang WX, Dong X, Cheng XQ, Ma LX, Xing Q

To Be Published

Sort by: Download
Showing 1 - 10 of 62. Page 1 of 7
Display:
Statistics
×

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Preview first 10
Download

Filter By

Current Database

  • EMDB [62]

Current status

  • REL [62]

Sample type

  • Protein [60]
  • Complex [56]
  • Ligand [9]
  • Cellular component [4]
  • Sample [2]
  • Cell [1]

Organism

  • Salmonella enterica [62]
  • Salmonella enterica [4]
  • Mus musculus [2]
  • Salmonella enterica [2]
  • Salmonella enterica [1]
  • Salmonella enterica [1]
  • Escherichia coli [1]
  • Gallus gallus [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [57]
  • Helical reconstruction [5]

Resolution

  • ≥ 2Å and < 3Å [16]
  • ≥ 3Å and < 4Å [31]
  • ≥ 4Å and < 5Å [9]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [2]
  • ≥ 16Å and < 20Å [2]

Model molecular weight

  • 0-50 kDa [3]
  • 50-100 kDa [1]
  • 100-250 kDa [10]
  • 250-500 kDa [6]
  • 500-1000 kDa [6]
  • 1-2 MDa [10]
  • 2-5 MDa [15]
  • 5-10 MDa [7]
  • > 10 MDa [2]

Release Date

  • 2025 [9]
  • 2024 [26]
  • 2023 [1]
  • 2022 [3]
  • 2021 [16]
  • 2019 [3]
  • 2018 [1]
  • 2017 [1]
  • 2009 [2]

Author by name

  • Tan J [31]
  • Tan JX [31]
  • Zhou Y [31]
  • Zhu Y [31]
  • Zhang L [23]
  • Han S [21]
  • Zhou X [21]
  • Zhu YQ [21]
  • Chang S [10]
  • Chang SH [10]
  • Gao H [10]
  • Liang H [10]
  • Wang T [10]
  • Wang X [10]
  • Wu H [10]
  • Xu C [10]
  • Zhang X [10]
  • Minamino T [9]
  • Miyata T [9]
  • Namba K [9]
  • Kinoshita M [8]
  • Makino F [8]
  • Imada K [7]
  • Wang J [4]
  • Ansell TB [3]
  • Ashraf KU [3]
  • Bunoro-batista M [3]
  • Firlar E [3]
  • Gao X [3]
  • Hughes KT [3]
  • Kaelber JT [3]
  • Liu A [3]
  • Marlovits T [3]
  • Marlovits TC [3]
  • Petrou VI [3]
  • Punetha A [3]
  • Rosario-garrido S [3]
  • Stansfeld PJ [3]
  • Wald J [3]
  • Xu J [3]
  • Xu JH [3]
  • Zhang Y [3]
  • Zhang YQ [3]
  • Berry RM [2]
  • Caesar JJE [2]
  • Cheng XQ [2]
  • Chevance FFV [2]
  • Deme JC [2]
  • Fahrenkamp D [2]
  • Furlong E [2]
  • Furlong EJ [2]
  • Goessweiner-mohr N [2]
  • Jiang WX [2]
  • Johnson S [2]
  • Kato T [2]
  • Kotov V [2]
  • Lea SM [2]
  • Ma LX [2]
  • Miletic S [2]
  • Nord AL [2]
  • Orlova EV [2]
  • Pantel M [2]
  • Remaut H [2]
  • Salih O [2]
  • Vesper O [2]
  • Waksman G [2]
  • Xing Q [2]
  • Aizawa SI [1]
  • Atkinson CE [1]
  • Beeby M [1]
  • Berbon M [1]
  • Brett Finlay B [1]
  • Calcraft T [1]
  • Cao J [1]
  • Chai J [1]
  • Chevance FF [1]
  • Deng W [1]
  • Desrosiers DC [1]
  • Dong X [1]
  • Egelman EH [1]
  • Ellenberg I [1]
  • Faix J [1]
  • Fujii T [1]
  • Galan JE [1]
  • Gonzalez-rodriguez N [1]
  • Grabe GJ [1]
  • Guo EZ [1]
  • Habenstein B [1]
  • Han Z [1]
  • Hennell James R [1]
  • Hiraoka KD [1]
  • Holden DW [1]
  • Hong C [1]
  • Hu J [1]
  • Hu Z [1]
  • Kawamoto A [1]
  • Kudryashov DS [1]
  • Kudryashova E [1]
  • Lagercrantz S [1]
  • Lin G [1]

Author by ORCID

  • Zhou Y [21]
  • Zhu Y [21]
  • Gao H [10]
  • Namba K [9]
  • Minamino T [8]
  • Kinoshita M [7]
  • Imada K [7]
  • Gao X [3]
  • Makino F [3]
  • Hughes KT [2]
  • Marlovits TC [2]
  • Deme JC [2]
  • Lea SM [2]
  • Berry RM [2]
  • Wald J [2]
  • Miyata T [2]
  • Zhang L [2]
  • Johnson S [2]
  • Furlong EJ [2]
  • Remaut H [2]
  • Xing Q [2]
  • Salih O [2]
  • Orlova EV [2]
  • Sui SF [1]
  • Runyan LA [1]
  • Matsunami H [1]
  • Gonzalez-rodriguez N [1]
  • Loquet A [1]
  • Chai J [1]
  • Marlovits T [1]
  • Wolf M [1]
  • Hennell James R [1]
  • Cao J [1]
  • Grabe GJ [1]
  • Waraich K [1]
  • Yu XJ [1]
  • Nans A [1]
  • Strynadka NCJ [1]
  • Paidimuddala B [1]
  • Hu Z [1]
  • Thuenauer R [1]
  • Calcraft T [1]
  • Tolchard J [1]
  • Galan JE [1]
  • Goessweiner-mohr N [1]
  • Rouse SL [1]
  • Yuan B [1]
  • Kawamoto A [1]
  • Kato T [1]
  • Matthews-palmer TRS [1]
  • Faix J [1]
  • Habenstein B [1]
  • Scholz J [1]

Journal

  • CELL RES [22]
  • CELL [10]
  • COMMUN BIOL [5]
  • NAT COMMUN [4]
  • BIORXIV [3]
  • MICROBIOL SPECTR [3]
  • NAT MICROBIOL [3]
  • TO BE PUBLISHED [3]
  • J MOL BIOL [2]
  • SCI ADV [2]
  • J STRUCT BIOL [1]
  • NAT STRUCT MOL BIOL [1]
  • PLOS BIOL [1]
  • PNAS [1]
  • STRUCTURE [1]

Software

  • CRYOSPARC [27]
  • RELION [9]
  • UCSF CHIMERA [6]
  • IMAGIC [2]
  • URO [2]
  • CISTEM [1]
  • COOT [1]

Microscope

  • FEI TITAN KRIOS [41]
  • JEOL CRYO ARM 300 [7]
  • TFS KRIOS [5]
  • FEI TALOS ARCTICA [3]
  • FEI TITAN [3]
  • FEI TECNAI 12 [2]
  • JEOL 3200FSC [1]

Electron Source

  • FIELD EMISSION GUN [60]
  • TUNGSTEN HAIRPIN [2]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [24]
  • GATAN K3 6K X 4K [17]
  • FEI FALCON IV 4K X 4K [11]
  • GATAN K3 BIOQUANTUM 6K X 4K [5]
  • KODAK SO-163 FILM [2]
  • FEI FALCON II 4K X 4K [1]
  • FEI FALCON III 4K X 4K [1]
  • TVIPS TEMCAM-F415 4K X 4K [1]

External links

  • PDB [60]
  • AlphaFold DB [58]
  • UniProt [58]
  • PDBe-Kb [57]
  • Pfam [57]
  • Gene Ontology [56]
  • InterPro [56]
  • ChEBI [9]
  • ChEMBL [8]
  • DrugBank [8]
  • EMPIAR [4]