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natural_source_ncbi_code:"85708"

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Current Database

  • EMDB [16]

Current status

  • REL [16]

Sample type

  • Protein [13]
  • Virus [12]
  • Complex [10]
  • DNA [3]
  • Ligand [2]
  • Sample [1]

Organism

  • Porcine circovirus 2 [16]
  • Sus scrofa [6]
  • Mus musculus [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [16]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [2]
  • ≥ 6Å and < 8Å [2]
  • ≥ 12Å and < 16Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 1-2 MDa [12]
  • 2-5 MDa [1]

Release Date

  • 2021 [2]
  • 2020 [2]
  • 2019 [1]
  • 2018 [9]
  • 2017 [1]
  • 2016 [1]

Author by name

  • Khayat R [11]
  • Dhindwal S [10]
  • Avila B [8]
  • Feng S [7]
  • Bian H [2]
  • Deng J [2]
  • Feng L [2]
  • Huang L [2]
  • Hussain S [2]
  • Li X [2]
  • Liu C [2]
  • Mo X [2]
  • Popp M [2]
  • Sun E [2]
  • Sun Z [2]
  • Tarasova E [2]
  • Tian K [2]
  • Wang J [2]
  • Wei Y [2]
  • Wu H [2]
  • Xia D [2]
  • Yin B [2]
  • Yuan A [2]
  • Yuan AY [2]
  • Zhu H [2]
  • Alimova A [1]
  • Galarza JM [1]
  • Gavrilov B [1]
  • Gottlieb P [1]
  • Guo F [1]
  • Jiang W [1]
  • Katz A [1]
  • Li TC [1]
  • Liu Z [1]
  • Wang F [1]
  • Wen K [1]

Author by ORCID

  • Dhindwal S [7]
  • Avila B [7]
  • Tarasova E [2]
  • Khayat R [2]
  • Mo X [2]
  • Yuan A [2]
  • Li X [2]
  • Jiang W [1]
  • Liu Z [1]

Journal

  • J VIROL [9]
  • MBIO [2]
  • PLOS PATHOG [2]
  • STRUCTURE [1]
  • TO BE PUBLISHED [1]
  • VIROLOGY [1]

Software

  • RELION [9]
  • FREALIGN [6]
  • CRYOSPARC [4]
  • EMAN2 [1]
  • JSPR, EMAN2 [1]

Microscope

  • FEI TITAN [10]
  • FEI TITAN KRIOS [4]
  • FEI TALOS ARCTICA [2]

Electron Source

  • FIELD EMISSION GUN [16]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [10]
  • FEI CETA 4K X 4K [2]
  • FEI FALCON II 4K X 4K [2]
  • GATAN K2 QUANTUM 4K X 4K [1]
  • KODAK SO-163 FILM [1]

External links

  • PDB [15]
  • Gene Ontology [13]
  • InterPro [13]
  • PDBe-Kb [13]
  • Pfam [13]
  • UniProt [13]
  • SCOP2 [3]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • AlphaFold DB [1]
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Showing 1 - 10 of 16. Page 1 of 2
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EMD-23249
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3D View
Cryo-EM structure of PCV2 Replicase bound to ssDNA
Release date: Aug. 25, 2021
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7lar
Q-score: 0.474

Tarasova E, Dhindwal S, Popp M, Hussain S, Khayat R

Mbio (2021) 12 pp. e0076321-e0076321 [ DOI: doi:10.1128/mBio.00763-21 Pubmed: 34311576 ]

EMD-23250
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Cryo-EM structure of PCV2 Replicase bound to ssDNA
Release date: Aug. 25, 2021
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7las
Q-score: 0.374

Tarasova E, Dhindwal S, Popp M, Hussain S, Khayat R

Mbio (2021) 12 pp. e0076321-e0076321 [ DOI: doi:10.1128/mBio.00763-21 Pubmed: 34311576 ]

EMD-0838
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Neutralization mechanism of a monoclonal antibody targeting a porcine circovirus type 2 Cap protein conformational epitope
Release date: Feb. 12, 2020
Resolution: 7.2 Å
EM Method: Single-particle
Fitted PDBs: 6l62
Q-score: 0.133

Huang L, Sun Z, Xia D, Wei Y, Sun E, Liu C, Zhu H, Bian H, Wu H, Feng L, Wang J, Liu C

J Virol (2020) 94 [ Pubmed: 32075932 DOI: doi:10.1128/JVI.01836-19 ]

EMD-0916
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Neutralization mechanism of a monoclonal antibody targeting a porcine circovirus type 2 Cap protein conformational epitope
Release date: Feb. 12, 2020
Resolution: 6.7 Å
EM Method: Single-particle
Fitted PDBs: 6lm3
Q-score: -0.006

Huang L, Sun Z, Xia D, Wei Y, Sun E, Liu C, Zhu H, Bian H, Wu H, Feng L, Wang J, Liu C

J Virol (2020) 94 [ Pubmed: 32075932 DOI: doi:10.1128/JVI.01836-19 ]

EMD-20113
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Structure of the PCV2d virus-like particle
Release date: Sept. 25, 2019
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6ola
Q-score: 0.539

Khayat R, Wen K, Alimova A, Gavrilov B, Katz A, Galarza JM, Gottlieb P

Virology (2019) 537 pp. 186-197 [ DOI: doi:10.1016/j.virol.2019.09.001 Pubmed: 31505320 ]

EMD-8939
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Mechanism of cellular recognition by PCV2
Release date: Dec. 26, 2018
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6dzu
Q-score: 0.561

Dhindwal S, Avila B, Khayat R

To Be Published

EMD-8969
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3D View
Mechanism of cellular recognition by PCV2
Release date: Dec. 26, 2018
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6e2r
Q-score: 0.625

Dhindwal S, Avila B, Feng S, Khayat R

J Virol (2019) 93 [ DOI: doi:10.1128/JVI.02222-18 Pubmed: 30602608 ]

EMD-8970
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3D View
Mechanism of cellular recognition by PCV2
Release date: Dec. 26, 2018
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6e2x
Q-score: 0.477

Dhindwal S, Avila B, Feng S, Khayat R

J Virol (2019) 93 [ DOI: doi:10.1128/JVI.02222-18 Pubmed: 30602608 ]

EMD-8971
Download Map
3D View
Mechanism of cellular recognition by PCV2
Release date: Dec. 26, 2018
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6e2z
Q-score: 0.482

Dhindwal S, Avila B, Feng S, Khayat R

J Virol (2019) 93 [ DOI: doi:10.1128/JVI.02222-18 Pubmed: 30602608 ]

EMD-8972
Download Map
3D View
Mechanism of cellular recognition by PCV2
Release date: Dec. 26, 2018
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6e30
Q-score: 0.48

Dhindwal S, Avila B, Feng S, Khayat R

J Virol (2019) 93 [ DOI: doi:10.1128/JVI.02222-18 Pubmed: 30602608 ]

Sort by: Download
Showing 1 - 10 of 16. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [16]

Current status

  • REL [16]

Sample type

  • Protein [13]
  • Virus [12]
  • Complex [10]
  • DNA [3]
  • Ligand [2]
  • Sample [1]

Organism

  • Porcine circovirus 2 [16]
  • Sus scrofa [6]
  • Mus musculus [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [16]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [2]
  • ≥ 6Å and < 8Å [2]
  • ≥ 12Å and < 16Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 1-2 MDa [12]
  • 2-5 MDa [1]

Release Date

  • 2021 [2]
  • 2020 [2]
  • 2019 [1]
  • 2018 [9]
  • 2017 [1]
  • 2016 [1]

Author by name

  • Khayat R [11]
  • Dhindwal S [10]
  • Avila B [8]
  • Feng S [7]
  • Bian H [2]
  • Deng J [2]
  • Feng L [2]
  • Huang L [2]
  • Hussain S [2]
  • Li X [2]
  • Liu C [2]
  • Mo X [2]
  • Popp M [2]
  • Sun E [2]
  • Sun Z [2]
  • Tarasova E [2]
  • Tian K [2]
  • Wang J [2]
  • Wei Y [2]
  • Wu H [2]
  • Xia D [2]
  • Yin B [2]
  • Yuan A [2]
  • Yuan AY [2]
  • Zhu H [2]
  • Alimova A [1]
  • Galarza JM [1]
  • Gavrilov B [1]
  • Gottlieb P [1]
  • Guo F [1]
  • Jiang W [1]
  • Katz A [1]
  • Li TC [1]
  • Liu Z [1]
  • Wang F [1]
  • Wen K [1]

Author by ORCID

  • Dhindwal S [7]
  • Avila B [7]
  • Tarasova E [2]
  • Khayat R [2]
  • Mo X [2]
  • Yuan A [2]
  • Li X [2]
  • Jiang W [1]
  • Liu Z [1]

Journal

  • J VIROL [9]
  • MBIO [2]
  • PLOS PATHOG [2]
  • STRUCTURE [1]
  • TO BE PUBLISHED [1]
  • VIROLOGY [1]

Software

  • RELION [9]
  • FREALIGN [6]
  • CRYOSPARC [4]
  • EMAN2 [1]
  • JSPR, EMAN2 [1]

Microscope

  • FEI TITAN [10]
  • FEI TITAN KRIOS [4]
  • FEI TALOS ARCTICA [2]

Electron Source

  • FIELD EMISSION GUN [16]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [10]
  • FEI CETA 4K X 4K [2]
  • FEI FALCON II 4K X 4K [2]
  • GATAN K2 QUANTUM 4K X 4K [1]
  • KODAK SO-163 FILM [1]

External links

  • PDB [15]
  • Gene Ontology [13]
  • InterPro [13]
  • PDBe-Kb [13]
  • Pfam [13]
  • UniProt [13]
  • SCOP2 [3]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • AlphaFold DB [1]