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natural_source_ncbi_code:"85106"

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Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Virus [7]
  • Protein [4]
  • Sample [4]
  • Cellular component [1]
  • Complex [1]

Organism

  • Adeno-associated dependoparvovirus a [8]
  • Homo sapiens [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [2]
  • ≥ 8Å and < 12Å [4]

Model molecular weight

  • 2-5 MDa [4]

Release Date

  • 2023 [1]
  • 2021 [1]
  • 2019 [2]
  • 2011 [4]

Author by name

  • Bottcher B [4]
  • Gerlach B [4]
  • Kleinschmidt JA [4]
  • Cao L [2]
  • Cui M [2]
  • Ding W [2]
  • He Y [2]
  • Hu M [2]
  • Li H [2]
  • Li S [2]
  • Lou Z [2]
  • Qin L [2]
  • Rao Z [2]
  • Sun Y [2]
  • Sun Z [2]
  • Xu G [2]
  • Yuan Z [2]
  • Zhang R [2]
  • Bechler S [1]
  • Bennett A [1]
  • Chipman P [1]
  • Fluck 3Rd Ec [1]
  • Fluck EC [1]
  • Fu X [1]
  • Gliwa K [1]
  • Hoff H [1]
  • Lee CY [1]
  • Liu W [1]
  • Ma K [1]
  • Martino RA [1]
  • Mckenna R [1]
  • Mietzsch M [1]
  • Moiseenkova-bell VY [1]
  • Murphy J [1]
  • Nelson AR [1]
  • Pumroy RA [1]
  • Roy S [1]
  • Sims JJ [1]
  • Viner R [1]
  • Wang Q [1]
  • Wilson JM [1]

Author by ORCID

  • Bottcher B [4]
  • Cui M [2]
  • Lou Z [2]
  • Mckenna R [1]
  • Wilson JM [1]
  • Chipman P [1]

Journal

  • J MOL BIOL [4]
  • NAT COMMUN [2]
  • J VIROL [1]
  • MOL THER METHODS CLIN DEV [1]

Software

  • MRC [4]
  • CHIMERA [1]
  • RELION [1]

Microscope

  • FEI/PHILIPS CM200FEG [4]
  • FEI TECNAI ARCTICA [3]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • KODAK SO-163 FILM [4]
  • FEI FALCON II 4K X 4K [2]
  • DIRECT ELECTRON APOLLO 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

External links

  • Gene Ontology [4]
  • InterPro [4]
  • PDB [4]
  • PDBe-Kb [4]
  • Pfam [4]
  • UniProt [4]
  • AlphaFold DB [1]
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Showing 1 - 8 of 8. Page 1 of 1
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EMD-29377
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3D View
AAV1 VP3 Only Capsid
Release date: Feb. 8, 2023
Resolution: 2.27 Å
EM Method: Single-particle
Fitted PDBs: 8fq4
Q-score: 0.693

Mietzsch M, Liu W, Ma K, Bennett A, Nelson AR, Gliwa K, Chipman P, Fu X, Bechler S, McKenna R, Viner R

Mol Ther Methods Clin Dev (2023) 29 pp. 460-472 [ Pubmed: 37273903 DOI: doi:10.1016/j.omtm.2023.05.002 ]

EMD-24495
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3D View
Cryo-EM Structure of Adeno-Associated Virus Serotype 1 with Engineered Peptide Domain PHP.B AAV1-PHP.B
Release date: Aug. 4, 2021
Resolution: 2.32 Å
EM Method: Single-particle
Fitted PDBs: 7rk9
Q-score: 0.664

Martino RA, Fluck 3rd EC, Murphy J, Wang Q, Hoff H, Pumroy RA, Lee CY, Sims JJ, Roy S, Moiseenkova-Bell VY, Wilson JM

J Virol (2021) 95 pp. e0116421-e0116421 [ DOI: doi:10.1128/JVI.01164-21 Pubmed: 34346767 ]

EMD-9794
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3D View
AAV1 in complex with AAVR
Release date: Oct. 23, 2019
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6jcq
Q-score: 0.414

Zhang R, Xu G, Cao L, Sun Z, He Y, Cui M, Sun Y, Li S, Li H, Qin L, Hu M, Yuan Z, Rao Z, Ding W, Rao Z, Lou Z

Nat Commun (2019) 10 pp. 3760-3760 [ DOI: doi:10.1038/s41467-019-11668-x Pubmed: 31434885 ]

EMD-9795
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3D View
AAV1 in neutral condition at 3.07 Ang
Release date: Oct. 23, 2019
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 6jcr
Q-score: 0.452

Zhang R, Xu G, Cao L, Sun Z, He Y, Cui M, Sun Y, Li S, Li H, Qin L, Hu M, Yuan Z, Rao Z, Ding W, Rao Z, Lou Z

Nat Commun (2019) 10 pp. 3760-3760 [ DOI: doi:10.1038/s41467-019-11668-x Pubmed: 31434885 ]

EMD-1836
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3D View
Conformational changes of Adeno-associated Virus type 1 induced by genome packaging
Release date: June 30, 2011
Resolution: 9.6 Å
EM Method: Single-particle

Gerlach B, Kleinschmidt JA, Bottcher B

J Mol Biol (2011) 409 pp. 427-438 [ Pubmed: 21463638 DOI: doi:10.1016/j.jmb.2011.03.062 ]

EMD-1837
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3D View
Conformational changes of Adeno-associated Virus type 1 induced by genome packaging
Release date: June 30, 2011
Resolution: 9.8 Å
EM Method: Single-particle

Gerlach B, Kleinschmidt JA, Bottcher B

J Mol Biol (2011) 409 pp. 427-438 [ Pubmed: 21463638 DOI: doi:10.1016/j.jmb.2011.03.062 ]

EMD-1838
Download Map
3D View
Conformational changes of Adeno-associated Virus type 1 induced by genome packaging
Release date: June 30, 2011
Resolution: 9.7 Å
EM Method: Single-particle

Gerlach B, Kleinschmidt JA, Bottcher B

J Mol Biol (2011) 409 pp. 427-438 [ Pubmed: 21463638 DOI: doi:10.1016/j.jmb.2011.03.062 ]

EMD-1839
Download Map
3D View
Conformational changes of Adeno-associated Virus type 1 induced by genome packaging
Release date: June 30, 2011
Resolution: 9.6 Å
EM Method: Single-particle

Gerlach B, Kleinschmidt JA, Bottcher B

J Mol Biol (2011) 409 pp. 427-438 [ Pubmed: 21463638 DOI: doi:10.1016/j.jmb.2011.03.062 ]

Sort by: Download
Showing 1 - 8 of 8. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Virus [7]
  • Protein [4]
  • Sample [4]
  • Cellular component [1]
  • Complex [1]

Organism

  • Adeno-associated dependoparvovirus a [8]
  • Homo sapiens [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [2]
  • ≥ 8Å and < 12Å [4]

Model molecular weight

  • 2-5 MDa [4]

Release Date

  • 2023 [1]
  • 2021 [1]
  • 2019 [2]
  • 2011 [4]

Author by name

  • Bottcher B [4]
  • Gerlach B [4]
  • Kleinschmidt JA [4]
  • Cao L [2]
  • Cui M [2]
  • Ding W [2]
  • He Y [2]
  • Hu M [2]
  • Li H [2]
  • Li S [2]
  • Lou Z [2]
  • Qin L [2]
  • Rao Z [2]
  • Sun Y [2]
  • Sun Z [2]
  • Xu G [2]
  • Yuan Z [2]
  • Zhang R [2]
  • Bechler S [1]
  • Bennett A [1]
  • Chipman P [1]
  • Fluck 3Rd Ec [1]
  • Fluck EC [1]
  • Fu X [1]
  • Gliwa K [1]
  • Hoff H [1]
  • Lee CY [1]
  • Liu W [1]
  • Ma K [1]
  • Martino RA [1]
  • Mckenna R [1]
  • Mietzsch M [1]
  • Moiseenkova-bell VY [1]
  • Murphy J [1]
  • Nelson AR [1]
  • Pumroy RA [1]
  • Roy S [1]
  • Sims JJ [1]
  • Viner R [1]
  • Wang Q [1]
  • Wilson JM [1]

Author by ORCID

  • Bottcher B [4]
  • Cui M [2]
  • Lou Z [2]
  • Mckenna R [1]
  • Wilson JM [1]
  • Chipman P [1]

Journal

  • J MOL BIOL [4]
  • NAT COMMUN [2]
  • J VIROL [1]
  • MOL THER METHODS CLIN DEV [1]

Software

  • MRC [4]
  • CHIMERA [1]
  • RELION [1]

Microscope

  • FEI/PHILIPS CM200FEG [4]
  • FEI TECNAI ARCTICA [3]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • KODAK SO-163 FILM [4]
  • FEI FALCON II 4K X 4K [2]
  • DIRECT ELECTRON APOLLO 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

External links

  • Gene Ontology [4]
  • InterPro [4]
  • PDB [4]
  • PDBe-Kb [4]
  • Pfam [4]
  • UniProt [4]
  • AlphaFold DB [1]