Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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Filter By

Current Database

  • EMDB [163]

Current status

  • REL [163]

Sample type

  • Complex [157]
  • Protein [111]
  • Ligand [74]
  • RNA [33]
  • Cell [4]
  • DNA [3]
  • Cellular component [2]

Organism

  • Chaetomium thermophilum [163]
  • Chaetomium thermophilum [14]
  • Synthetic construct [3]
  • Homo sapiens [3]
  • Psychromonas sp. b3m02 [2]
  • Xenopus laevis [2]
  • Saccharomyces cerevisiae [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [153]
  • Subtomogram averaging [9]
  • Tomography [1]

Resolution

  • ≥ 2Å and < 3Å [63]
  • ≥ 3Å and < 4Å [63]
  • ≥ 4Å and < 5Å [21]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [6]
  • ≥ 12Å and < 16Å [2]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [2]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [38]
  • 250-500 kDa [6]
  • 500-1000 kDa [16]
  • 1-2 MDa [8]
  • 2-5 MDa [35]

Release Date

  • 2025 [10]
  • 2024 [8]
  • 2023 [78]
  • 2022 [23]
  • 2021 [16]
  • 2020 [3]
  • 2019 [15]
  • 2018 [8]
  • 2017 [2]

Author by name

  • Hurt E [75]
  • Beckmann R [70]
  • Cheng J [70]
  • Kellner N [70]
  • Lau B [69]
  • Berninghausen O [67]
  • Fischer P [60]
  • Flemming D [59]
  • Thoms M [59]
  • Denk T [56]
  • Falquet L [56]
  • Fromm L [56]
  • Kuehlbrandt W [14]
  • Kuhlbrandt W [14]
  • Kastritis PL [12]
  • Hamdi F [11]
  • Kyrilis FL [11]
  • Tuting C [10]
  • Gourdon P [9]
  • Hopfner KP [9]
  • Huang Z [9]
  • Li P [9]
  • Niu S [9]
  • Sinning I [9]
  • Skalidis I [9]
  • Wang K [9]
  • Wild K [9]
  • Eustermann S [8]
  • Kostrewa D [8]
  • Langer JD [8]
  • Mcdowell MA [8]
  • Tueting C [8]
  • Wang Y [8]
  • Borgnia MJ [7]
  • Krahn JM [7]
  • Briggs JAG [6]
  • Kisonaite M [6]
  • Kovtun O [6]
  • Laube E [6]
  • Leneva N [6]
  • Li Y [6]
  • Meier-credo J [6]
  • Owen DJ [6]
  • Williams JG [6]
  • Yang TJ [6]
  • Cowan JA [5]
  • Hendricks AL [5]
  • Kessler B [5]
  • Lammens K [5]
  • Lindkvist-petersson K [5]
  • Meloni G [5]
  • O Reilly Fj [5]
  • Rappsilber J [5]
  • Stakyte K [5]
  • Villones RLE [5]
  • Wang KT [5]
  • Agip AA [4]
  • Agip ANA [4]
  • Bassler J [4]
  • Beck M [4]
  • Bley CJ [4]
  • Brown B [4]
  • Chen DC [4]
  • Chiaruttin N [4]
  • Chiaruttini N [4]
  • Chojnowski G [4]
  • Daumke O [4]
  • Dietrich L [4]
  • Ermanno U [4]
  • Eustermann SE [4]
  • Faelber K [4]
  • Gronberg C [4]
  • Hader S [4]
  • Haeder S [4]
  • Hessenberger M [4]
  • Hoelz A [4]
  • Hsu AL [4]
  • Jansma M [4]
  • Kudryashev M [4]
  • Kunz S [4]
  • Lakomek K [4]
  • Lapouge K [4]
  • Lilie H [4]
  • Linke-winnebeck C [4]
  • Litz C [4]
  • Liu X [4]
  • Matthaeus C [4]
  • Mobbs GW [4]
  • Moldt M [4]
  • Morado DR [4]
  • Muhleip A [4]
  • Nie S [4]
  • Noe F [4]
  • Noel JK [4]
  • Ornelas P [4]
  • Perriches T [4]
  • Petrovic S [4]
  • Pfitzner AK [4]
  • Rosenbaum E [4]
  • Roux A [4]

Author by ORCID

  • Hurt E [73]
  • Lau B [69]
  • Beckmann R [69]
  • Cheng J [69]
  • Kellner N [69]
  • Thoms M [59]
  • Flemming D [59]
  • Falquet L [56]
  • Denk T [56]
  • Fromm L [56]
  • Kuhlbrandt W [14]
  • Kastritis PL [12]
  • Hamdi F [11]
  • Kyrilis FL [11]
  • Huang Z [9]
  • Sinning I [9]
  • Wild K [9]
  • Skalidis I [9]
  • Wang K [9]
  • Li P [9]
  • Gourdon P [9]
  • Langer JD [8]
  • Mcdowell MA [8]
  • Kovtun O [6]
  • Leneva N [6]
  • Laube E [6]
  • Owen DJ [6]
  • Meier-credo J [6]
  • Briggs JAG [6]
  • O'reilly FJ [5]
  • Villones RLE [5]
  • Hopfner KP [5]
  • Lindkvist-petersson K [5]
  • Meloni G [5]
  • Borgnia MJ [4]
  • Tomaleri GP [4]
  • Pfitzner AK [4]
  • Strauss M [4]
  • Matthaeus C [4]
  • Nie S [4]
  • Kisonaite M [4]
  • Muhleip A [4]
  • Stanley RE [4]
  • Linke-winnebeck C [4]
  • Uboldi E [4]
  • Agip AA [4]
  • Chojnowski G [4]
  • Petrovic S [4]
  • Roux A [4]
  • Schaus L [4]
  • Stevens TA [4]
  • Liu X [4]
  • Ornelas P [4]
  • Litz C [4]
  • Dietrich L [4]
  • Lapouge K [4]
  • Semchonok DA [4]
  • Hoelz A [4]
  • Hsu AL [4]
  • Bley CJ [4]
  • Mobbs GW [4]
  • Hessenberger M [4]
  • Kudryashev M [4]
  • Wollweber F [4]
  • Morado DR [4]
  • Lakomek K [4]
  • Tuting C [3]
  • Mattoo RUH [3]
  • Chen DH [3]
  • Buschauer R [3]
  • Beck M [3]
  • Bassler J [3]
  • Williams JG [3]
  • Chen FX [3]
  • Hammaren HM [3]
  • Zhang H [3]
  • Li Y [3]
  • Song A [3]
  • Marmorstein R [3]
  • Enkavi G [2]
  • Heimes M [2]
  • Saar D [2]
  • Vattulainen I [2]
  • Teasdale RD [2]
  • Hummer G [2]
  • Ruppert T [2]
  • Halic M [2]
  • Engel BD [2]
  • Xu Y [2]
  • He Y [2]
  • Qu Q [2]
  • Collins BM [2]
  • Xu J [2]
  • Schwappach B [2]
  • Li L [2]
  • Yang TJ [2]
  • Mukherjee S [2]
  • Bilokapic S [2]
  • Bykov YS [2]
  • Li T [2]

Journal

  • EMBO REP [65]
  • NAT COMMUN [25]
  • NAT STRUCT MOL BIOL [11]
  • NATURE [10]
  • SCI ADV [10]
  • MOL CELL [8]
  • STRUCTURE [8]
  • PNAS [5]
  • SCIENCE [5]
  • BIORXIV [4]
  • CELL REP [3]
  • CELL RES [3]
  • PROTEIN CELL [2]
  • TO BE PUBLISHED [2]
  • COMMUN BIOL [1]
  • MOL SYST BIOL [1]
  • NUCLEIC ACIDS RES [1]

Software

  • CRYOSPARC [38]
  • RELION [32]
  • CISTEM [5]
  • CTFFIND [5]
  • DYNAMO [4]
  • COOT [3]
  • GCTF [3]
  • AV3 [2]
  • IMOD [2]
  • TOM [2]
  • EMAN2 [1]
  • SPARX [1]

Microscope

  • FEI TITAN KRIOS [141]
  • TFS GLACIOS [11]
  • TFS KRIOS [10]
  • JEOL CRYO ARM 200 [1]

Electron Source

  • FIELD EMISSION GUN [163]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [93]
  • FEI FALCON III 4K X 4K [22]
  • GATAN K3 6K X 4K [15]
  • GATAN K3 BIOQUANTUM 6K X 4K [14]
  • GATAN K2 QUANTUM 4K X 4K [9]
  • FEI FALCON IV 4K X 4K [7]
  • FEI FALCON II 4K X 4K [3]
  • GATAN K2 BASE 4K X 4K [1]

External links

  • UniProt [106]
  • PDB [103]
  • PDBe-Kb [101]
  • Pfam [101]
  • Gene Ontology [100]
  • AlphaFold DB [95]
  • InterPro [95]
  • ChEBI [72]
  • DrugBank [72]
  • ChEMBL [65]
  • EMPIAR [11]
  • SCOP2 [8]
Sort by: Download
Showing 1 - 10 of 163. Page 1 of 17
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EMD-52576
Download Map
3D View
High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum
Release date: Dec. 17, 2025
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 9i1w

Wild K, Klein M, Burkard A, Marchand V, Kellner N, Paez A, Pastore S, Butto T, Motorin Y, Helm M, Sinning I

Nucleic Acids Res (2025) 53 [ Pubmed: 41432034 DOI: doi:10.1093/nar/gkaf1368 ]

EMD-52656
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3D View
Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
Release date: Nov. 12, 2025
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9i78
Q-score: 0.61

Yang TJ, Mukherjee S, Langer JD, Hummer G, McDowell MA

Nat Commun (2025) 16 pp. 9566-9566 [ DOI: doi:10.1038/s41467-025-65357-z Pubmed: 41162385 ]

EMD-52829
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3D View
Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon complex with improved density for TRAP alpha luminal domain
Release date: Nov. 12, 2025
Resolution: 2.64 Å
EM Method: Single-particle

Yang TJ, Mukherjee S, Langer JD, Hummer G, McDowell MA

Nat Commun (2025) 16 pp. 9566-9566 [ DOI: doi:10.1038/s41467-025-65357-z Pubmed: 41162385 ]

EMD-52652
Download Map
3D View
CryoEM structure of the Chaetomium thermophilum TOM core complex at 2.7 angstrom resolution pALDH treated
Release date: July 9, 2025
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9i6b
Q-score: 0.558

Agip AA, Ornelas P, Yang TJ, Uboldi E, Hader S, McDowell MA, Kuhlbrandt W

PNAS (2025) 122 pp. e2507279122-e2507279122 [ Pubmed: 40674418 DOI: doi:10.1073/pnas.2507279122 ]

EMD-52658
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CryoEM structure of the Chaetomium thermophilum TOM core complex at 3.2 angstrom resolution
Release date: July 9, 2025
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9i7p
Q-score: 0.487

Agip AA, Ornelas P, Yang TJ, Uboldi E, Hader S, McDowell MA, Kuhlbrandt W

PNAS (2025) 122 pp. e2507279122-e2507279122 [ Pubmed: 40674418 DOI: doi:10.1073/pnas.2507279122 ]

EMD-52660
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3D View
CryoEM structure of the Chaetomium thermophilum TOM holo complex at 3.2 angstrom resolution pALDH treated
Release date: July 9, 2025
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9i7s
Q-score: 0.415

Agip AA, Ornelas P, Yang TJ, Uboldi E, Hader S, McDowell MA, Kuhlbrandt W

PNAS (2025) 122 pp. e2507279122-e2507279122 [ Pubmed: 40674418 DOI: doi:10.1073/pnas.2507279122 ]

EMD-52661
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3D View
CryoEM structure of the Chaetomium thermophilum TOM holo complex at 3.8 angstrom resolution
Release date: July 9, 2025
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9i7t
Q-score: 0.338

Agip AA, Ornelas P, Yang TJ, Uboldi E, Hader S, McDowell MA, Kuhlbrandt W

PNAS (2025) 122 pp. e2507279122-e2507279122 [ Pubmed: 40674418 DOI: doi:10.1073/pnas.2507279122 ]

EMD-62841
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3D View
Cryo-EM structure of the thermophile spliceosome state ILS
Release date: March 12, 2025
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9l5r
Q-score: 0.378

Li Y, Fischer P, Wang M, Zhou Q, Song A, Yuan R, Meng W, Chen FX, Luhrmann R, Lau B, Hurt E, Cheng J

Cell Res (2025) 35 pp. 296-308 [ Pubmed: 40016598 DOI: doi:10.1038/s41422-025-01084-w ]

EMD-62842
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3D View
Cryo-EM structure of the thermophile spliceosome state B Q1
Release date: March 12, 2025
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9l5s
Q-score: 0.352

Li Y, Fischer P, Wang M, Zhou Q, Song A, Yuan R, Meng W, Chen FX, Luhrmann R, Lau B, Hurt E, Cheng J

Cell Res (2025) 35 pp. 296-308 [ Pubmed: 40016598 DOI: doi:10.1038/s41422-025-01084-w ]

EMD-62843
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3D View
Cryo-EM structure of the thermophile spliceosome state B Q2
Release date: March 12, 2025
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9l5t
Q-score: 0.331

Li Y, Fischer P, Wang M, Zhou Q, Song A, Yuan R, Meng W, Chen FX, Luhrmann R, Lau B, Hurt E, Cheng J

Cell Res (2025) 35 pp. 296-308 [ Pubmed: 40016598 DOI: doi:10.1038/s41422-025-01084-w ]

Sort by: Download
Showing 1 - 10 of 163. Page 1 of 17
Display:
Statistics
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Preview first 10
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Filter By

Current Database

  • EMDB [163]

Current status

  • REL [163]

Sample type

  • Complex [157]
  • Protein [111]
  • Ligand [74]
  • RNA [33]
  • Cell [4]
  • DNA [3]
  • Cellular component [2]

Organism

  • Chaetomium thermophilum [163]
  • Chaetomium thermophilum [14]
  • Synthetic construct [3]
  • Homo sapiens [3]
  • Psychromonas sp. b3m02 [2]
  • Xenopus laevis [2]
  • Saccharomyces cerevisiae [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [153]
  • Subtomogram averaging [9]
  • Tomography [1]

Resolution

  • ≥ 2Å and < 3Å [63]
  • ≥ 3Å and < 4Å [63]
  • ≥ 4Å and < 5Å [21]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [6]
  • ≥ 12Å and < 16Å [2]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [2]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [38]
  • 250-500 kDa [6]
  • 500-1000 kDa [16]
  • 1-2 MDa [8]
  • 2-5 MDa [35]

Release Date

  • 2025 [10]
  • 2024 [8]
  • 2023 [78]
  • 2022 [23]
  • 2021 [16]
  • 2020 [3]
  • 2019 [15]
  • 2018 [8]
  • 2017 [2]

Author by name

  • Hurt E [75]
  • Beckmann R [70]
  • Cheng J [70]
  • Kellner N [70]
  • Lau B [69]
  • Berninghausen O [67]
  • Fischer P [60]
  • Flemming D [59]
  • Thoms M [59]
  • Denk T [56]
  • Falquet L [56]
  • Fromm L [56]
  • Kuehlbrandt W [14]
  • Kuhlbrandt W [14]
  • Kastritis PL [12]
  • Hamdi F [11]
  • Kyrilis FL [11]
  • Tuting C [10]
  • Gourdon P [9]
  • Hopfner KP [9]
  • Huang Z [9]
  • Li P [9]
  • Niu S [9]
  • Sinning I [9]
  • Skalidis I [9]
  • Wang K [9]
  • Wild K [9]
  • Eustermann S [8]
  • Kostrewa D [8]
  • Langer JD [8]
  • Mcdowell MA [8]
  • Tueting C [8]
  • Wang Y [8]
  • Borgnia MJ [7]
  • Krahn JM [7]
  • Briggs JAG [6]
  • Kisonaite M [6]
  • Kovtun O [6]
  • Laube E [6]
  • Leneva N [6]
  • Li Y [6]
  • Meier-credo J [6]
  • Owen DJ [6]
  • Williams JG [6]
  • Yang TJ [6]
  • Cowan JA [5]
  • Hendricks AL [5]
  • Kessler B [5]
  • Lammens K [5]
  • Lindkvist-petersson K [5]
  • Meloni G [5]
  • O Reilly Fj [5]
  • Rappsilber J [5]
  • Stakyte K [5]
  • Villones RLE [5]
  • Wang KT [5]
  • Agip AA [4]
  • Agip ANA [4]
  • Bassler J [4]
  • Beck M [4]
  • Bley CJ [4]
  • Brown B [4]
  • Chen DC [4]
  • Chiaruttin N [4]
  • Chiaruttini N [4]
  • Chojnowski G [4]
  • Daumke O [4]
  • Dietrich L [4]
  • Ermanno U [4]
  • Eustermann SE [4]
  • Faelber K [4]
  • Gronberg C [4]
  • Hader S [4]
  • Haeder S [4]
  • Hessenberger M [4]
  • Hoelz A [4]
  • Hsu AL [4]
  • Jansma M [4]
  • Kudryashev M [4]
  • Kunz S [4]
  • Lakomek K [4]
  • Lapouge K [4]
  • Lilie H [4]
  • Linke-winnebeck C [4]
  • Litz C [4]
  • Liu X [4]
  • Matthaeus C [4]
  • Mobbs GW [4]
  • Moldt M [4]
  • Morado DR [4]
  • Muhleip A [4]
  • Nie S [4]
  • Noe F [4]
  • Noel JK [4]
  • Ornelas P [4]
  • Perriches T [4]
  • Petrovic S [4]
  • Pfitzner AK [4]
  • Rosenbaum E [4]
  • Roux A [4]

Author by ORCID

  • Hurt E [73]
  • Lau B [69]
  • Beckmann R [69]
  • Cheng J [69]
  • Kellner N [69]
  • Thoms M [59]
  • Flemming D [59]
  • Falquet L [56]
  • Denk T [56]
  • Fromm L [56]
  • Kuhlbrandt W [14]
  • Kastritis PL [12]
  • Hamdi F [11]
  • Kyrilis FL [11]
  • Huang Z [9]
  • Sinning I [9]
  • Wild K [9]
  • Skalidis I [9]
  • Wang K [9]
  • Li P [9]
  • Gourdon P [9]
  • Langer JD [8]
  • Mcdowell MA [8]
  • Kovtun O [6]
  • Leneva N [6]
  • Laube E [6]
  • Owen DJ [6]
  • Meier-credo J [6]
  • Briggs JAG [6]
  • O'reilly FJ [5]
  • Villones RLE [5]
  • Hopfner KP [5]
  • Lindkvist-petersson K [5]
  • Meloni G [5]
  • Borgnia MJ [4]
  • Tomaleri GP [4]
  • Pfitzner AK [4]
  • Strauss M [4]
  • Matthaeus C [4]
  • Nie S [4]
  • Kisonaite M [4]
  • Muhleip A [4]
  • Stanley RE [4]
  • Linke-winnebeck C [4]
  • Uboldi E [4]
  • Agip AA [4]
  • Chojnowski G [4]
  • Petrovic S [4]
  • Roux A [4]
  • Schaus L [4]
  • Stevens TA [4]
  • Liu X [4]
  • Ornelas P [4]
  • Litz C [4]
  • Dietrich L [4]
  • Lapouge K [4]
  • Semchonok DA [4]
  • Hoelz A [4]
  • Hsu AL [4]
  • Bley CJ [4]
  • Mobbs GW [4]
  • Hessenberger M [4]
  • Kudryashev M [4]
  • Wollweber F [4]
  • Morado DR [4]
  • Lakomek K [4]
  • Tuting C [3]
  • Mattoo RUH [3]
  • Chen DH [3]
  • Buschauer R [3]
  • Beck M [3]
  • Bassler J [3]
  • Williams JG [3]
  • Chen FX [3]
  • Hammaren HM [3]
  • Zhang H [3]
  • Li Y [3]
  • Song A [3]
  • Marmorstein R [3]
  • Enkavi G [2]
  • Heimes M [2]
  • Saar D [2]
  • Vattulainen I [2]
  • Teasdale RD [2]
  • Hummer G [2]
  • Ruppert T [2]
  • Halic M [2]
  • Engel BD [2]
  • Xu Y [2]
  • He Y [2]
  • Qu Q [2]
  • Collins BM [2]
  • Xu J [2]
  • Schwappach B [2]
  • Li L [2]
  • Yang TJ [2]
  • Mukherjee S [2]
  • Bilokapic S [2]
  • Bykov YS [2]
  • Li T [2]

Journal

  • EMBO REP [65]
  • NAT COMMUN [25]
  • NAT STRUCT MOL BIOL [11]
  • NATURE [10]
  • SCI ADV [10]
  • MOL CELL [8]
  • STRUCTURE [8]
  • PNAS [5]
  • SCIENCE [5]
  • BIORXIV [4]
  • CELL REP [3]
  • CELL RES [3]
  • PROTEIN CELL [2]
  • TO BE PUBLISHED [2]
  • COMMUN BIOL [1]
  • MOL SYST BIOL [1]
  • NUCLEIC ACIDS RES [1]

Software

  • CRYOSPARC [38]
  • RELION [32]
  • CISTEM [5]
  • CTFFIND [5]
  • DYNAMO [4]
  • COOT [3]
  • GCTF [3]
  • AV3 [2]
  • IMOD [2]
  • TOM [2]
  • EMAN2 [1]
  • SPARX [1]

Microscope

  • FEI TITAN KRIOS [141]
  • TFS GLACIOS [11]
  • TFS KRIOS [10]
  • JEOL CRYO ARM 200 [1]

Electron Source

  • FIELD EMISSION GUN [163]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [93]
  • FEI FALCON III 4K X 4K [22]
  • GATAN K3 6K X 4K [15]
  • GATAN K3 BIOQUANTUM 6K X 4K [14]
  • GATAN K2 QUANTUM 4K X 4K [9]
  • FEI FALCON IV 4K X 4K [7]
  • FEI FALCON II 4K X 4K [3]
  • GATAN K2 BASE 4K X 4K [1]

External links

  • UniProt [106]
  • PDB [103]
  • PDBe-Kb [101]
  • Pfam [101]
  • Gene Ontology [100]
  • AlphaFold DB [95]
  • InterPro [95]
  • ChEBI [72]
  • DrugBank [72]
  • ChEMBL [65]
  • EMPIAR [11]
  • SCOP2 [8]