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natural_source_ncbi_code:"630"

Filter By

Current Database

  • EMDB [10]

Current status

  • REL [10]

Sample type

  • Protein [6]
  • Sample [4]
  • Cell [3]
  • Complex [3]

Organism

  • Yersinia enterocolitica [10]

EM Method

  • Single-particle [6]
  • Subtomogram averaging [4]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 12Å and < 16Å [3]
  • ≥ 30Å [4]

Model molecular weight

  • 500-1000 kDa [2]

Release Date

  • 2021 [5]
  • 2018 [1]
  • 2013 [4]

Author by name

  • Kudryashev M [7]
  • Amstutz M [4]
  • Castano-diez D [4]
  • Cornelis GR [4]
  • Diepold A [4]
  • Kowal J [4]
  • Stahlberg H [4]
  • Berger C [3]
  • Chami M [3]
  • Engel A [3]
  • Lopez-iglesias C [3]
  • Muller AS [3]
  • Muller SA [3]
  • Peters PJ [3]
  • Ravelli RBG [3]
  • Ringler P [3]
  • Adler A [1]
  • Bertosin E [1]
  • Bleck CK [1]
  • Bleck CKE [1]
  • Braeuning B [1]
  • Brauning B [1]
  • Cao J [1]
  • Carroni M [1]
  • Dal Peraro M [1]
  • Degiacomi M [1]
  • Degiacomi MT [1]
  • Deme JC [1]
  • Dietz H [1]
  • Groll M [1]
  • Heinz DW [1]
  • Ihling C [1]
  • Johnson S [1]
  • Kuhlen L [1]
  • Lea SM [1]
  • Morado DR [1]
  • Muennich S [1]
  • Munnich S [1]
  • Praetorius F [1]
  • Richter K [1]
  • Schatt A [1]
  • Schmelz S [1]
  • Sharov G [1]
  • Sinz A [1]
  • Stenta M [1]
  • Wiesand U [1]
  • De La Rosa-Trevin Jm [1]

Author by ORCID

  • Castano-diez D [4]
  • Stahlberg H [4]
  • Diepold A [4]
  • Kudryashev M [4]
  • Kowal J [4]
  • Ravelli RBG [3]
  • Berger C [3]
  • Deme JC [1]
  • Lea SM [1]
  • Praetorius F [1]
  • Groll M [1]
  • Schmelz S [1]
  • Sharov G [1]
  • Brauning B [1]
  • Carroni M [1]
  • Johnson S [1]
  • Richter K [1]
  • Bleck CK [1]
  • Dietz H [1]
  • Sinz A [1]
  • Degiacomi MT [1]
  • Morado DR [1]

Journal

  • J STRUCT BIOL [3]
  • STRUCTURE [3]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • ELIFE [1]
  • NAT COMMUN [1]
  • PLOS ONE [1]

Software

  • DYNAMO [3]
  • EMAN2 [3]
  • IMOD [3]
  • RELION [3]
  • CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [4]
  • FEI TECNAI ARCTICA [3]
  • FEI/PHILIPS CM200FEG [3]

Electron Source

  • FIELD EMISSION GUN [10]

Film or detector model

  • FEI FALCON III 4K X 4K [4]
  • KODAK SO-163 FILM [3]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • GATAN ULTRASCAN 1000 2K X 2K [1]

External links

  • AlphaFold DB [5]
  • UniProt [5]
  • PDB [2]
  • InterPro [1]
  • PDBe-Kb [1]
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EMD-11820
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3D View
Nonameric cytoplasmic domain of SctV from Yersinia enterocolitica
Release date: June 2, 2021
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7alw
Q-score: 0.479

Kuhlen L, Johnson S, Cao J, Deme JC, Lea SM

PLoS One (2021) 16 pp. e0252800-e0252800 [ DOI: doi:10.1371/journal.pone.0252800 Pubmed: 34143799 ]

EMD-11905
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3D View
In situ subtomogram averaging structure of the type III secretion system of yersinia enterocolitica - sorting platform
Release date: Feb. 24, 2021
Resolution: 40.0 Å
EM Method: Subtomogram averaging

Berger C, Ravelli RBG, Lopez-Iglesias C, Kudryashev M, Diepold A, Peters PJ

J Struct Biol (2021) 213 pp. 107701-107701 [ Pubmed: 33549695 DOI: doi:10.1016/j.jsb.2021.107701 ]

EMD-11906
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3D View
In situ subtomogram averaging structure of the type III secretion system of yersinia enterocolitica - basal body
Release date: Feb. 24, 2021
Resolution: 33.0 Å
EM Method: Subtomogram averaging

Berger C, Ravelli RBG, Lopez-Iglesias C, Kudryashev M, Diepold A, Peters PJ

J Struct Biol (2021) 213 pp. 107701-107701 [ Pubmed: 33549695 DOI: doi:10.1016/j.jsb.2021.107701 ]

EMD-11907
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3D View
In situ subtomogram averaging structure of the type III secretion system of yersinia enterocolitica - needle tip
Release date: Feb. 24, 2021
Resolution: 39.0 Å
EM Method: Subtomogram averaging

Berger C, Ravelli RBG, Lopez-Iglesias C, Kudryashev M, Diepold A, Peters PJ

J Struct Biol (2021) 213 pp. 107701-107701 [ Pubmed: 33549695 DOI: doi:10.1016/j.jsb.2021.107701 ]

EMD-12236
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Reprocessing of EMPIAR-10389 data urease with Scipion
Release date: Feb. 10, 2021
Resolution: 2.14 Å
EM Method: Single-particle

Sharov G, Morado DR, Carroni M, de la Rosa-Trevin JM

Acta Crystallogr D Struct Biol (2021) 77 pp. 403-410 [ DOI: doi:10.1107/S2059798321001856 Pubmed: 33825701 ]

EMD-3885
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YaxAB pore complex
Release date: May 16, 2018
Resolution: 6.1 Å
EM Method: Single-particle
Fitted PDBs: 6el1
Q-score: 0.178

Brauning B, Bertosin E, Praetorius F, Ihling C, Schatt A, Adler A, Richter K, Sinz A, Dietz H, Groll M

Nat Commun (2018) 9 pp. 1806-1806 [ Pubmed: 29728606 DOI: doi:10.1038/s41467-018-04139-2 ]

EMD-5720
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Structure of the Yersinia enterocolitica secretin YscC
Release date: Nov. 13, 2013
Resolution: 15.0 Å
EM Method: Single-particle

Kowal J, Chami M, Ringler P, Muller SA, Kudryashev M, Castano-Diez D, Amstutz M, Cornelis GR, Stahlberg H, Engel A

Structure (2013) 21 pp. 2152-2161 [ DOI: doi:10.1016/j.str.2013.09.012 Pubmed: 24207124 ]

EMD-5721
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Structure of the flexible N-terminal region of Yersinia enterocolitica secretin YscC
Release date: Nov. 13, 2013
Resolution: 15.0 Å
EM Method: Single-particle

Kowal J, Chami M, Ringler P, Muller SA, Kudryashev M, Castano-Diez D, Amstutz M, Cornelis GR, Stahlberg H, Engel A

Structure (2013) 21 pp. 2152-2161 [ DOI: doi:10.1016/j.str.2013.09.012 Pubmed: 24207124 ]

EMD-5722
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3D View
Structure of the trypsin-resistant core of secretin YscC
Release date: Nov. 13, 2013
Resolution: 15.0 Å
EM Method: Single-particle

Kowal J, Chami M, Ringler P, Muller SA, Kudryashev M, Castano-Diez D, Amstutz M, Cornelis GR, Stahlberg H, Engel A

Structure (2013) 21 pp. 2152-2161 [ DOI: doi:10.1016/j.str.2013.09.012 Pubmed: 24207124 ]

EMD-5694
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3D View
Type III secretion system Injectisome of Yersinia enterocolitica in situ
Release date: July 17, 2013
Resolution: 40.0 Å
EM Method: Subtomogram averaging

Kudryashev M, Stenta M, Schmelz S, Amstutz M, Wiesand U, Castano-Diez D, Degiacomi MT, Munnich S, Bleck CK, Kowal J, Diepold A, Heinz DW, Dal Peraro M, Cornelis GR, Stahlberg H

eLife (2013) 2 pp. e00792-e00792 [ DOI: doi:10.7554/eLife.00792 Pubmed: 23908767 ]

Sort by: Download
Showing 1 - 10 of 10. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [10]

Current status

  • REL [10]

Sample type

  • Protein [6]
  • Sample [4]
  • Cell [3]
  • Complex [3]

Organism

  • Yersinia enterocolitica [10]

EM Method

  • Single-particle [6]
  • Subtomogram averaging [4]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 12Å and < 16Å [3]
  • ≥ 30Å [4]

Model molecular weight

  • 500-1000 kDa [2]

Release Date

  • 2021 [5]
  • 2018 [1]
  • 2013 [4]

Author by name

  • Kudryashev M [7]
  • Amstutz M [4]
  • Castano-diez D [4]
  • Cornelis GR [4]
  • Diepold A [4]
  • Kowal J [4]
  • Stahlberg H [4]
  • Berger C [3]
  • Chami M [3]
  • Engel A [3]
  • Lopez-iglesias C [3]
  • Muller AS [3]
  • Muller SA [3]
  • Peters PJ [3]
  • Ravelli RBG [3]
  • Ringler P [3]
  • Adler A [1]
  • Bertosin E [1]
  • Bleck CK [1]
  • Bleck CKE [1]
  • Braeuning B [1]
  • Brauning B [1]
  • Cao J [1]
  • Carroni M [1]
  • Dal Peraro M [1]
  • Degiacomi M [1]
  • Degiacomi MT [1]
  • Deme JC [1]
  • Dietz H [1]
  • Groll M [1]
  • Heinz DW [1]
  • Ihling C [1]
  • Johnson S [1]
  • Kuhlen L [1]
  • Lea SM [1]
  • Morado DR [1]
  • Muennich S [1]
  • Munnich S [1]
  • Praetorius F [1]
  • Richter K [1]
  • Schatt A [1]
  • Schmelz S [1]
  • Sharov G [1]
  • Sinz A [1]
  • Stenta M [1]
  • Wiesand U [1]
  • De La Rosa-Trevin Jm [1]

Author by ORCID

  • Castano-diez D [4]
  • Stahlberg H [4]
  • Diepold A [4]
  • Kudryashev M [4]
  • Kowal J [4]
  • Ravelli RBG [3]
  • Berger C [3]
  • Deme JC [1]
  • Lea SM [1]
  • Praetorius F [1]
  • Groll M [1]
  • Schmelz S [1]
  • Sharov G [1]
  • Brauning B [1]
  • Carroni M [1]
  • Johnson S [1]
  • Richter K [1]
  • Bleck CK [1]
  • Dietz H [1]
  • Sinz A [1]
  • Degiacomi MT [1]
  • Morado DR [1]

Journal

  • J STRUCT BIOL [3]
  • STRUCTURE [3]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • ELIFE [1]
  • NAT COMMUN [1]
  • PLOS ONE [1]

Software

  • DYNAMO [3]
  • EMAN2 [3]
  • IMOD [3]
  • RELION [3]
  • CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [4]
  • FEI TECNAI ARCTICA [3]
  • FEI/PHILIPS CM200FEG [3]

Electron Source

  • FIELD EMISSION GUN [10]

Film or detector model

  • FEI FALCON III 4K X 4K [4]
  • KODAK SO-163 FILM [3]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • GATAN ULTRASCAN 1000 2K X 2K [1]

External links

  • AlphaFold DB [5]
  • UniProt [5]
  • PDB [2]
  • InterPro [1]
  • PDBe-Kb [1]