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natural_source_ncbi_code:"6039"

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Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [9]
  • Cellular component [2]
  • Protein [2]
  • Ligand [1]
  • RNA [1]

Organism

  • Vairimorpha necatrix [11]

EM Method

  • Single-particle [8]
  • Subtomogram averaging [3]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [6]
  • ≥ 8Å and < 12Å [1]
  • ≥ 20Å and < 30Å [1]
  • ≥ 30Å [2]

Model molecular weight

  • 500-1000 kDa [1]
  • 2-5 MDa [1]

Release Date

  • 2024 [3]
  • 2022 [3]
  • 2019 [5]

Author by name

  • Barandun J [11]
  • Vossbrinck CR [8]
  • Ehrenbolger K [6]
  • Jespersen N [6]
  • Hunziker M [5]
  • Klinge S [5]
  • Carlson LA [3]
  • Sharma H [3]
  • Svedberg D [3]
  • Winiger R [3]
  • Winiger RR [3]

Author by ORCID

  • Barandun J [8]
  • Hunziker M [5]
  • Klinge S [5]
  • Svedberg D [3]
  • Jespersen N [3]
  • Winiger RR [3]
  • Ehrenbolger K [3]

Journal

  • NAT MICROBIOL [5]
  • BIORXIV [3]
  • NAT COMMUN [3]

Software

  • RELION [8]
  • CRYOSPARC [3]
  • DYNAMO [3]
  • EMAN2 [2]

Microscope

  • FEI TALOS ARCTICA [5]
  • FEI TITAN KRIOS [3]
  • TFS KRIOS [2]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • GATAN K2 QUANTUM 4K X 4K [5]
  • GATAN K2 SUMMIT 4K X 4K [5]
  • FEI FALCON IV 4K X 4K [1]

External links

  • EMPIAR [9]
  • PDB [2]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
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Showing 1 - 10 of 11. Page 1 of 2
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EMD-17391
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EMPIAR-11557
Subtomogram average of ribosomes in germinated polar tubes of Vairimorpha necatrix
Release date: Jan. 10, 2024
Resolution: 46.0 Å
EM Method: Subtomogram averaging

Sharma H, Jespersen N, Ehrenbolger K, Carlson LA, Barandun J

bioRxiv (2023) [ DOI: doi:10.1101/2023.05.31.543061 ]

EMD-17467
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Subtomogram representing a segment of the outer wall of empty germinated polar tubes from Vairimorpha necatrix.
Release date: Jan. 10, 2024
Resolution: 25.7 Å
EM Method: Subtomogram averaging

Sharma H, Jespersen N, Ehrenbolger K, Carlson LA, Barandun J

bioRxiv (2023) [ DOI: doi:10.1101/2023.05.31.543061 ]

EMD-17468
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Subtomogram representing a segment of the outer wall of cargo-filled, germinated polar tubes from Vairimorpha necatrix.
Release date: Jan. 10, 2024
Resolution: 35.0 Å
EM Method: Subtomogram averaging

Sharma H, Jespersen N, Ehrenbolger K, Carlson LA, Barandun J

bioRxiv (2023) [ DOI: doi:10.1101/2023.05.31.543061 ]

EMD-15365
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EMPIAR-11117
Vairimorpha necatrix 20S proteasome from spores
Release date: Nov. 23, 2022
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8adn
Q-score: 0.566

Jespersen N, Ehrenbolger K, Winiger RR, Svedberg D, Vossbrinck CR, Barandun J

Nat Commun (2022) 13 pp. 6962-6962 [ Pubmed: 36379934 DOI: doi:10.1038/s41467-022-34691-x ]

EMD-15366
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EMPIAR-11121
Vairimorpha necatrix 26S proteasome from sporoplasms
Release date: Nov. 23, 2022
Resolution: 8.3 Å
EM Method: Single-particle

Jespersen N, Ehrenbolger K, Winiger RR, Svedberg D, Vossbrinck CR, Barandun J

Nat Commun (2022) 13 pp. 6962-6962 [ Pubmed: 36379934 DOI: doi:10.1038/s41467-022-34691-x ]

EMD-15367
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Raw data
EMPIAR-11118
Vairimorpha necatrix 20S proteasome from sporoplasms
Release date: Nov. 23, 2022
Resolution: 3.22 Å
EM Method: Single-particle

Jespersen N, Ehrenbolger K, Winiger RR, Svedberg D, Vossbrinck CR, Barandun J

Nat Commun (2022) 13 pp. 6962-6962 [ Pubmed: 36379934 DOI: doi:10.1038/s41467-022-34691-x ]

EMD-4931
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EMPIAR-11075
Cryo-EM structure of the microsporidian ribosome: Multibody-refined map body 1 LSU
Release date: July 10, 2019
Resolution: 3.26 Å
EM Method: Single-particle

Barandun J, Hunziker M, Vossbrinck CR, Klinge S

Nat Microbiol (2019) 4 pp. 1798-1804 [ DOI: doi:10.1038/s41564-019-0514-6 Pubmed: 31332387 ]

EMD-4932
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EMPIAR-11075
Cryo-EM structure of the microsporidian ribosome: Multibody-refined map body 2 SSU-body
Release date: July 10, 2019
Resolution: 3.3 Å
EM Method: Single-particle

Barandun J, Hunziker M, Vossbrinck CR, Klinge S

Nat Microbiol (2019) 4 pp. 1798-1804 [ DOI: doi:10.1038/s41564-019-0514-6 Pubmed: 31332387 ]

EMD-4933
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EMPIAR-11075
Cryo-EM structure of the microsporidian ribosome: Multibody-refined map body 3 SSU-head
Release date: July 10, 2019
Resolution: 3.64 Å
EM Method: Single-particle

Barandun J, Hunziker M, Vossbrinck CR, Klinge S

Nat Microbiol (2019) 4 pp. 1798-1804 [ DOI: doi:10.1038/s41564-019-0514-6 Pubmed: 31332387 ]

EMD-4934
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3D View
Raw data
EMPIAR-11075
Cryo-EM structure of the microsporidian ribosome: State 1, Multibody-refined map body 3 SSU-head
Release date: July 10, 2019
Resolution: 3.7 Å
EM Method: Single-particle

Barandun J, Hunziker M, Vossbrinck CR, Klinge S

Nat Microbiol (2019) 4 pp. 1798-1804 [ DOI: doi:10.1038/s41564-019-0514-6 Pubmed: 31332387 ]

Sort by: Download
Showing 1 - 10 of 11. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [9]
  • Cellular component [2]
  • Protein [2]
  • Ligand [1]
  • RNA [1]

Organism

  • Vairimorpha necatrix [11]

EM Method

  • Single-particle [8]
  • Subtomogram averaging [3]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [6]
  • ≥ 8Å and < 12Å [1]
  • ≥ 20Å and < 30Å [1]
  • ≥ 30Å [2]

Model molecular weight

  • 500-1000 kDa [1]
  • 2-5 MDa [1]

Release Date

  • 2024 [3]
  • 2022 [3]
  • 2019 [5]

Author by name

  • Barandun J [11]
  • Vossbrinck CR [8]
  • Ehrenbolger K [6]
  • Jespersen N [6]
  • Hunziker M [5]
  • Klinge S [5]
  • Carlson LA [3]
  • Sharma H [3]
  • Svedberg D [3]
  • Winiger R [3]
  • Winiger RR [3]

Author by ORCID

  • Barandun J [8]
  • Hunziker M [5]
  • Klinge S [5]
  • Svedberg D [3]
  • Jespersen N [3]
  • Winiger RR [3]
  • Ehrenbolger K [3]

Journal

  • NAT MICROBIOL [5]
  • BIORXIV [3]
  • NAT COMMUN [3]

Software

  • RELION [8]
  • CRYOSPARC [3]
  • DYNAMO [3]
  • EMAN2 [2]

Microscope

  • FEI TALOS ARCTICA [5]
  • FEI TITAN KRIOS [3]
  • TFS KRIOS [2]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • GATAN K2 QUANTUM 4K X 4K [5]
  • GATAN K2 SUMMIT 4K X 4K [5]
  • FEI FALCON IV 4K X 4K [1]

External links

  • EMPIAR [9]
  • PDB [2]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]