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natural_source_ncbi_code:"561"

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Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Complex [6]
  • Protein [4]
  • DNA [2]
  • Ligand [2]
  • RNA [1]

Organism

  • (no species) [6]
  • Escherichia coli [3]
  • Mus musculus [1]
  • (no species) [1]

EM Method

  • Single-particle [4]
  • Helical reconstruction [1]
  • Subtomogram averaging [1]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [3]
  • ≥ 6Å and < 8Å [1]
  • ≥ 12Å and < 16Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [1]
  • 500-1000 kDa [2]

Release Date

  • 2025 [1]
  • 2024 [1]
  • 2023 [1]
  • 2022 [2]
  • 2021 [1]

Author by name

  • Artsimovitch I [1]
  • Beis K [1]
  • Bondy-denomy J [1]
  • Bradshaw J [1]
  • Chang L [1]
  • Chen X [1]
  • Clare D [1]
  • Coon JJ [1]
  • David S [1]
  • Finazzo M [1]
  • Frankel G [1]
  • Frosio T [1]
  • Gabel C [1]
  • Gellert M [1]
  • Grant T [1]
  • He S [1]
  • Hilal T [1]
  • Himes B [1]
  • Himes BA [1]
  • Ishimoto N [1]
  • Lee KW [1]
  • Lodge JM [1]
  • Low WW [1]
  • Mendonca L [1]
  • Mukherjee IA [1]
  • Ni T [1]
  • Noinaj N [1]
  • Said N [1]
  • Salome AZ [1]
  • Seddon C [1]
  • Sheng Y [1]
  • Wahl MC [1]
  • Wang B [1]
  • Westphall MS [1]
  • Wong JLC [1]
  • Yang W [1]
  • Yao L [1]
  • Zhang P [1]

Author by ORCID

  • Lodge JM [1]
  • Beis K [1]
  • Noinaj N [1]
  • Ni T [1]
  • Salome AZ [1]
  • Said N [1]
  • Wong JLC [1]
  • Ishimoto N [1]
  • Coon JJ [1]
  • Frankel G [1]
  • David S [1]
  • Wahl MC [1]
  • Clare D [1]
  • Grant T [1]
  • Bondy-denomy J [1]
  • Chang L [1]
  • Hilal T [1]
  • Artsimovitch I [1]
  • Mendonca L [1]
  • Wang B [1]
  • Gabel C [1]
  • Zhang P [1]
  • Sheng Y [1]
  • Low WW [1]
  • Lee KW [1]
  • He S [1]

Journal

  • NAT COMMUN [2]
  • BIORXIV [1]
  • NAT CHEM BIOL [1]
  • NAT PROTOC [1]
  • TO BE PUBLISHED [1]

Software

  • CISTEM [2]
  • CRYOSPARC [1]
  • EMCLARITY [1]

Microscope

  • FEI TITAN KRIOS [4]
  • FEI TECNAI 12 [1]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [5]
  • LAB6 [1]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K2 QUANTUM 4K X 4K [1]
  • GATAN K2 SUMMIT 4K X 4K [1]
  • OTHER [1]

External links

  • AlphaFold DB [4]
  • PDB [4]
  • UniProt [4]
  • Gene Ontology [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • InterPro [2]
  • EMPIAR [1]
Sort by: Download
Showing 1 - 6 of 6. Page 1 of 1
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EMD-61730
Download Map
3D View
CryoEM structure of mouse RAG SEC-2DNA
Release date: July 23, 2025
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 9jqn
Q-score: 0.496

Chen X, Yao L, Yang W, Gellert M

To Be Published

EMD-50723
Download Map
3D View
Raw data
EMPIAR-12465
Cryo-EM structure of the decameric TraT surface exclusion lipoprotein from Escherichia coli F plasmid
Release date: Dec. 11, 2024
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 9fs5
Q-score: 0.338

Seddon C, David S, Wong JLC, Ishimoto N, He S, Bradshaw J, Low WW, Frankel G, Beis K

Nat Commun (2025) 16 pp. 659-659 [ DOI: doi:10.1038/s41467-025-55834-w Pubmed: 39809778 ]

EMD-18132
Download Map
3D View
Bacterial transcription termination factor Rho G150D mutant bound to ADP; C-terminal 8xHis-tag
Release date: Sept. 27, 2023
Resolution: 3.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 8q3p
Q-score: 0.45

Wang B, Said N, Hilal T, Finazzo M, Wahl MC, Artsimovitch I

bioRxiv (2023) [ DOI: doi:10.1101/2023.08.18.553922 Pubmed: 37645988 ]

EMD-25662
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3D View
Cryo-EM structure of Csy-AcrIF24-DNA dimer
Release date: Sept. 21, 2022
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7t3l
Q-score: 0.196

Mukherjee IA, Gabel C, Noinaj N, Bondy-Denomy J, Chang L

Nat Chem Biol (2022) 18 pp. 1417-1424 [ Pubmed: 36163386 DOI: doi:10.1038/s41589-022-01137-w ]

EMD-26222
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3D View
3D Structure Determination of GroEL Protein Complexes using Matrix-Landing Mass Spectrometry
Release date: April 6, 2022
Resolution: 15.0 Å
EM Method: Single-particle

Westphall MS, Lee KW, Salome AZ, Lodge JM, Grant T, Coon JJ

Nat Commun (2022) 13 pp. 2276-2276 [ DOI: doi:10.1038/s41467-022-29964-4 Pubmed: 35478194 ]

EMD-13270
Download Map
3D View
Subtomogram averaging of E. coli ribosome at 7 angstrom resolution
Release date: Aug. 25, 2021
Resolution: 7.0 Å
EM Method: Subtomogram averaging

Ni T, Frosio T, Mendonca L, Sheng Y, Clare D, Himes BA, Zhang P

Nat Protoc (2022) 17 pp. 421-444 [ Pubmed: 35022621 DOI: doi:10.1038/s41596-021-00648-5 ]

Sort by: Download
Showing 1 - 6 of 6. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Complex [6]
  • Protein [4]
  • DNA [2]
  • Ligand [2]
  • RNA [1]

Organism

  • (no species) [6]
  • Escherichia coli [3]
  • Mus musculus [1]
  • (no species) [1]

EM Method

  • Single-particle [4]
  • Helical reconstruction [1]
  • Subtomogram averaging [1]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [3]
  • ≥ 6Å and < 8Å [1]
  • ≥ 12Å and < 16Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [1]
  • 500-1000 kDa [2]

Release Date

  • 2025 [1]
  • 2024 [1]
  • 2023 [1]
  • 2022 [2]
  • 2021 [1]

Author by name

  • Artsimovitch I [1]
  • Beis K [1]
  • Bondy-denomy J [1]
  • Bradshaw J [1]
  • Chang L [1]
  • Chen X [1]
  • Clare D [1]
  • Coon JJ [1]
  • David S [1]
  • Finazzo M [1]
  • Frankel G [1]
  • Frosio T [1]
  • Gabel C [1]
  • Gellert M [1]
  • Grant T [1]
  • He S [1]
  • Hilal T [1]
  • Himes B [1]
  • Himes BA [1]
  • Ishimoto N [1]
  • Lee KW [1]
  • Lodge JM [1]
  • Low WW [1]
  • Mendonca L [1]
  • Mukherjee IA [1]
  • Ni T [1]
  • Noinaj N [1]
  • Said N [1]
  • Salome AZ [1]
  • Seddon C [1]
  • Sheng Y [1]
  • Wahl MC [1]
  • Wang B [1]
  • Westphall MS [1]
  • Wong JLC [1]
  • Yang W [1]
  • Yao L [1]
  • Zhang P [1]

Author by ORCID

  • Lodge JM [1]
  • Beis K [1]
  • Noinaj N [1]
  • Ni T [1]
  • Salome AZ [1]
  • Said N [1]
  • Wong JLC [1]
  • Ishimoto N [1]
  • Coon JJ [1]
  • Frankel G [1]
  • David S [1]
  • Wahl MC [1]
  • Clare D [1]
  • Grant T [1]
  • Bondy-denomy J [1]
  • Chang L [1]
  • Hilal T [1]
  • Artsimovitch I [1]
  • Mendonca L [1]
  • Wang B [1]
  • Gabel C [1]
  • Zhang P [1]
  • Sheng Y [1]
  • Low WW [1]
  • Lee KW [1]
  • He S [1]

Journal

  • NAT COMMUN [2]
  • BIORXIV [1]
  • NAT CHEM BIOL [1]
  • NAT PROTOC [1]
  • TO BE PUBLISHED [1]

Software

  • CISTEM [2]
  • CRYOSPARC [1]
  • EMCLARITY [1]

Microscope

  • FEI TITAN KRIOS [4]
  • FEI TECNAI 12 [1]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [5]
  • LAB6 [1]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K2 QUANTUM 4K X 4K [1]
  • GATAN K2 SUMMIT 4K X 4K [1]
  • OTHER [1]

External links

  • AlphaFold DB [4]
  • PDB [4]
  • UniProt [4]
  • Gene Ontology [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • InterPro [2]
  • EMPIAR [1]