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natural_source_ncbi_code:"37998"

Filter By

Current Database

  • EMDB [51]

Current status

  • REL [51]

Sample type

  • Protein [51]
  • Ligand [45]
  • Complex [43]
  • Cellular component [8]

Organism

  • Parengyodontium album [51]

EM Method

  • Electron Crystallography [51]

Resolution

  • < 2Å [17]
  • ≥ 2Å and < 3Å [13]
  • ≥ 3Å and < 4Å [1]

Model molecular weight

  • 0-50 kDa [51]

Release Date

  • 2025 [3]
  • 2023 [6]
  • 2022 [18]
  • 2020 [2]
  • 2019 [15]
  • 2018 [5]
  • 2016 [2]

Author by name

  • Gonen T [50]
  • Martynowycz MW [46]
  • Hattne J [45]
  • Clabbers MTB [26]
  • Unge J [15]
  • Jensen GJ [12]
  • Zhao W [12]
  • Shi D [7]
  • Nicolas WJ [6]
  • Rodriguez JA [6]
  • Gallagher-jones M [5]
  • Glynn C [5]
  • Shiriaeva A [5]
  • Weaver SJ [5]
  • Zee CT [5]
  • Martynoqycz MW [3]
  • Nannenga BL [2]
  • Penczek PA [2]
  • Reyes FE [2]
  • Sawaya MR [2]
  • De La Cruz Mj [2]
  • Borges RJ [1]
  • Calero G [1]
  • Cascio D [1]
  • Eisenberg D [1]
  • Gillman C [1]
  • Hinck AP [1]
  • Hinck CS [1]
  • Kim SK [1]
  • Li X [1]
  • Luo Z [1]
  • Miao J [1]
  • Millan C [1]
  • Richards LR [1]
  • Richards LS [1]
  • Rodriguez J [1]
  • Seidler P [1]
  • Uson I [1]
  • Weiss SC [1]
  • Zhou H [1]

Author by ORCID

  • Hattne J [45]
  • Martynowycz MW [45]
  • Gonen T [27]
  • Clabbers MTB [23]
  • Unge J [15]
  • Shiriaeva A [5]
  • Gallagher-jones M [5]
  • Penczek PA [2]
  • De La Cruz Mj [2]
  • Sawaya MR [2]
  • Rodriguez JA [1]
  • Richards LR [1]
  • Zhou H [1]
  • Millan C [1]
  • Uson I [1]

Journal

  • STRUCTURE [18]
  • PNAS [15]
  • NAT COMMUN [6]
  • IUCRJ [3]
  • J STRUCT BIOL [3]
  • NAT METHODS [2]
  • STRUCT DYN. [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • BIORXIV [1]
  • J APPL CRYSTALLOGR [1]

Software

  • AIMLESS [32]
  • PHENIX [29]
  • MOLREP [9]
  • POINTLESS [9]
  • REFMAC [5]
  • PHASER [3]
  • XDS [3]
  • XSCALE [3]
  • PHENIX.REFINE [1]

Microscope

  • FEI TALOS ARCTICA [21]
  • FEI TITAN KRIOS [17]
  • FEI TECNAI F20 [8]
  • TFS KRIOS [3]
  • FEI TECNAI 20 [1]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [51]

Film or detector model

  • FEI CETA 4K X 4K [29]
  • FEI FALCON IV 4K X 4K [10]
  • TVIPS TEMCAM-F416 4K X 4K [8]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K2 BASE 4K X 4K [1]
  • GATAN K3 6K X 4K [1]
  • GATAN ULTRASCAN 4000 4K X 4K [1]

External links

  • AlphaFold DB [51]
  • Gene Ontology [51]
  • InterPro [51]
  • PDB [51]
  • PDBe-Kb [51]
  • Pfam [51]
  • UniProt [51]
  • ChEBI [45]
  • DrugBank [45]
  • ChEMBL [44]
  • CATH [8]
Sort by: Download
Showing 1 - 10 of 51. Page 1 of 6
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EMD-70378
Download Map
3D View
MicroED structure of proteinase K without energy filtering
Release date: May 28, 2025
Resolution: 1.3 Å
EM Method: Electron Crystallography
Fitted PDBs: 9odv
Q-score: 0.763

Clabbers MTB, Gonen T

Struct Dyn. (2025) 12 pp. 034702-034702 [ DOI: doi:10.1063/4.0000755 Pubmed: 40370641 ]

EMD-70379
Download Map
3D View
MicroED structure of proteinase K with energy filtering
Release date: May 28, 2025
Resolution: 1.3 Å
EM Method: Electron Crystallography
Fitted PDBs: 9odw
Q-score: 0.767

Clabbers MTB, Gonen T

Struct Dyn. (2025) 12 pp. 034702-034702 [ DOI: doi:10.1063/4.0000755 Pubmed: 40370641 ]

EMD-46871
Download Map
3D View
Structure of proteinase K from energy-filtered MicroED data
Release date: March 19, 2025
Resolution: 1.09 Å
EM Method: Electron Crystallography
Fitted PDBs: 9dho

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

Nat Commun (2025) 16 pp. 2247-2247 [ DOI: doi:10.1038/s41467-025-57425-1 Pubmed: 40050283 ]

EMD-40351
Download Map
3D View
The MicroED structure of proteinase K crystallized by suspended drop crystallization
Release date: May 31, 2023
Resolution: 2.1 Å
EM Method: Electron Crystallography
Fitted PDBs: 8sdk
Q-score: 0.739

Gillman C, Nicolas WJ, Martynowycz MW, Gonen T

IUCrJ (2023) 10 pp. 430-436 [ DOI: doi:10.1107/S2052252523004141 Pubmed: 37223996 ]

EMD-29587
Download Map
3D View
MicroED structure of Proteinase K from lamellae milled from multiple plasma sources
Release date: May 24, 2023
Resolution: 1.39 Å
EM Method: Electron Crystallography
Fitted PDBs: 8fyo
Q-score: 0.911

Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

Nat Commun (2023) 14 pp. 1086-1086 [ DOI: doi:10.1038/s41467-023-36733-4 Pubmed: 36841804 ]

EMD-29588
Download Map
3D View
MicroED structure of Proteinase K from xenon milled lamellae
Release date: March 8, 2023
Resolution: 1.45 Å
EM Method: Electron Crystallography
Fitted PDBs: 8fyp
Q-score: 0.898

Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

Nat Commun (2023) 14 pp. 1086-1086 [ DOI: doi:10.1038/s41467-023-36733-4 Pubmed: 36841804 ]

EMD-29590
Download Map
3D View
MicroED structure of Proteinase K from argon milled lamellae
Release date: March 8, 2023
Resolution: 1.4 Å
EM Method: Electron Crystallography
Fitted PDBs: 8fyq
Q-score: 0.905

Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

Nat Commun (2023) 14 pp. 1086-1086 [ DOI: doi:10.1038/s41467-023-36733-4 Pubmed: 36841804 ]

EMD-29595
Download Map
3D View
MicroED structure of Proteinase K from oxygen milled lamellae
Release date: March 8, 2023
Resolution: 1.5 Å
EM Method: Electron Crystallography
Fitted PDBs: 8fyr
Q-score: 0.894

Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

Nat Commun (2023) 14 pp. 1086-1086 [ DOI: doi:10.1038/s41467-023-36733-4 Pubmed: 36841804 ]

EMD-29596
Download Map
3D View
MicroED structure of Proteinase K from nitrogen milled lamellae
Release date: March 8, 2023
Resolution: 1.8 Å
EM Method: Electron Crystallography
Fitted PDBs: 8fys
Q-score: 0.833

Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T

Nat Commun (2023) 14 pp. 1086-1086 [ DOI: doi:10.1038/s41467-023-36733-4 Pubmed: 36841804 ]

EMD-27900
Download Map
3D View
MicroED structure of proteinase K recorded on K2
Release date: Sept. 21, 2022
EM Method: Electron Crystallography
Fitted PDBs: 8e52

Clabbers MTB, Martynowycz MW, Hattne J, Nannenga BL, Gonen T

J Struct Biol (2022) 214 pp. 107886-107886 [ DOI: doi:10.1016/j.jsb.2022.107886 Pubmed: 36044956 ]

Sort by: Download
Showing 1 - 10 of 51. Page 1 of 6
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [51]

Current status

  • REL [51]

Sample type

  • Protein [51]
  • Ligand [45]
  • Complex [43]
  • Cellular component [8]

Organism

  • Parengyodontium album [51]

EM Method

  • Electron Crystallography [51]

Resolution

  • < 2Å [17]
  • ≥ 2Å and < 3Å [13]
  • ≥ 3Å and < 4Å [1]

Model molecular weight

  • 0-50 kDa [51]

Release Date

  • 2025 [3]
  • 2023 [6]
  • 2022 [18]
  • 2020 [2]
  • 2019 [15]
  • 2018 [5]
  • 2016 [2]

Author by name

  • Gonen T [50]
  • Martynowycz MW [46]
  • Hattne J [45]
  • Clabbers MTB [26]
  • Unge J [15]
  • Jensen GJ [12]
  • Zhao W [12]
  • Shi D [7]
  • Nicolas WJ [6]
  • Rodriguez JA [6]
  • Gallagher-jones M [5]
  • Glynn C [5]
  • Shiriaeva A [5]
  • Weaver SJ [5]
  • Zee CT [5]
  • Martynoqycz MW [3]
  • Nannenga BL [2]
  • Penczek PA [2]
  • Reyes FE [2]
  • Sawaya MR [2]
  • De La Cruz Mj [2]
  • Borges RJ [1]
  • Calero G [1]
  • Cascio D [1]
  • Eisenberg D [1]
  • Gillman C [1]
  • Hinck AP [1]
  • Hinck CS [1]
  • Kim SK [1]
  • Li X [1]
  • Luo Z [1]
  • Miao J [1]
  • Millan C [1]
  • Richards LR [1]
  • Richards LS [1]
  • Rodriguez J [1]
  • Seidler P [1]
  • Uson I [1]
  • Weiss SC [1]
  • Zhou H [1]

Author by ORCID

  • Hattne J [45]
  • Martynowycz MW [45]
  • Gonen T [27]
  • Clabbers MTB [23]
  • Unge J [15]
  • Shiriaeva A [5]
  • Gallagher-jones M [5]
  • Penczek PA [2]
  • De La Cruz Mj [2]
  • Sawaya MR [2]
  • Rodriguez JA [1]
  • Richards LR [1]
  • Zhou H [1]
  • Millan C [1]
  • Uson I [1]

Journal

  • STRUCTURE [18]
  • PNAS [15]
  • NAT COMMUN [6]
  • IUCRJ [3]
  • J STRUCT BIOL [3]
  • NAT METHODS [2]
  • STRUCT DYN. [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • BIORXIV [1]
  • J APPL CRYSTALLOGR [1]

Software

  • AIMLESS [32]
  • PHENIX [29]
  • MOLREP [9]
  • POINTLESS [9]
  • REFMAC [5]
  • PHASER [3]
  • XDS [3]
  • XSCALE [3]
  • PHENIX.REFINE [1]

Microscope

  • FEI TALOS ARCTICA [21]
  • FEI TITAN KRIOS [17]
  • FEI TECNAI F20 [8]
  • TFS KRIOS [3]
  • FEI TECNAI 20 [1]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [51]

Film or detector model

  • FEI CETA 4K X 4K [29]
  • FEI FALCON IV 4K X 4K [10]
  • TVIPS TEMCAM-F416 4K X 4K [8]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K2 BASE 4K X 4K [1]
  • GATAN K3 6K X 4K [1]
  • GATAN ULTRASCAN 4000 4K X 4K [1]

External links

  • AlphaFold DB [51]
  • Gene Ontology [51]
  • InterPro [51]
  • PDB [51]
  • PDBe-Kb [51]
  • Pfam [51]
  • UniProt [51]
  • ChEBI [45]
  • DrugBank [45]
  • ChEMBL [44]
  • CATH [8]