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natural_source_ncbi_code:"373153"

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Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Protein [7]
  • Complex [5]
  • Ligand [5]
  • Cellular component [2]

Organism

  • Streptococcus pneumoniae [7]
  • Streptococcus pneumoniae [3]

EM Method

  • Single-particle [7]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [2]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [5]
  • 1-2 MDa [1]

Release Date

  • 2023 [5]
  • 2021 [1]
  • 2017 [1]

Author by name

  • Chua WZ [5]
  • Feng H [5]
  • Li Z [5]
  • Luo M [5]
  • Min L [5]
  • Ser Z [5]
  • Sham LT [5]
  • Shao K [5]
  • Shi J [5]
  • Sobota RM [5]
  • Wang Y [5]
  • Xin X [5]
  • Xu X [5]
  • Yu L [5]
  • D Imprima E [1]
  • Han S [1]
  • Hyun JK [1]
  • Jeong HS [1]
  • Jung J [1]
  • Kim G [1]
  • Kim HM [1]
  • Kuhlbrandt W [1]
  • Lee S [1]
  • Lee SG [1]
  • Mills DJ [1]
  • Neuhaus A [1]
  • Rhee DK [1]
  • Seong-gyu L [1]
  • Yildiz O [1]
  • Van Pee K [1]

Author by ORCID

  • Sham LT [5]
  • Chua WZ [5]
  • Li Z [5]
  • Sobota RM [5]
  • Luo M [5]
  • Ser Z [5]
  • Feng H [5]
  • Kuhlbrandt W [1]
  • D'imprima E [1]
  • Neuhaus A [1]
  • Mills DJ [1]
  • Hyun JK [1]
  • Yildiz O [1]

Journal

  • NAT COMMUN [5]
  • ELIFE [1]
  • FASEB J [1]

Software

  • RELION [1]

Microscope

  • FEI TITAN KRIOS [6]
  • FEI POLARA 300 [1]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • GATAN K3 6K X 4K [5]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • AlphaFold DB [7]
  • PDB [7]
  • UniProt [7]
  • ChEBI [5]
  • ChEMBL [5]
  • DrugBank [5]
  • Gene Ontology [4]
  • InterPro [4]
  • PDBe-Kb [4]
  • Pfam [4]
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EMD-34715
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Cryo-EM structure of ComA bound to its mature substrate CSP peptide
Release date: Oct. 11, 2023
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8hf7
Q-score: 0.298

Yu L, Xu X, Chua WZ, Feng H, Ser Z, Shao K, Shi J, Wang Y, Li Z, Sobota RM, Sham LT, Luo M

Nat Commun (2023) 14 pp. 7178-7178 [ DOI: doi:10.1038/s41467-023-42852-9 Pubmed: 37935699 ]

EMD-36882
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Cryo-EM structure of nucleotide-bound ComA with ZinC ion
Release date: Oct. 11, 2023
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8k4b
Q-score: 0.297

Yu L, Xu X, Chua WZ, Feng H, Ser Z, Shao K, Shi J, Wang Y, Li Z, Sobota RM, Sham LT, Luo M

Nat Commun (2023) 14 pp. 7178-7178 [ DOI: doi:10.1038/s41467-023-42852-9 Pubmed: 37935699 ]

EMD-34712
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Cryo-EM structure of nucleotide-bound ComA at outward-facing state with EC gate closed conformation
Release date: Oct. 4, 2023
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8hf4
Q-score: 0.484

Yu L, Xu X, Chua WZ, Feng H, Ser Z, Shao K, Shi J, Wang Y, Li Z, Sobota RM, Sham LT, Luo M

Nat Commun (2023) 14 pp. 7178-7178 [ DOI: doi:10.1038/s41467-023-42852-9 Pubmed: 37935699 ]

EMD-34713
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3D View
Cryo-EM structure of nucleotide-bound ComA at outward-facing state with EC gate open conformation
Release date: Oct. 4, 2023
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8hf5
Q-score: 0.501

Yu L, Xu X, Chua WZ, Feng H, Ser Z, Shao K, Shi J, Wang Y, Li Z, Sobota RM, Sham LT, Luo M

Nat Commun (2023) 14 pp. 7178-7178 [ DOI: doi:10.1038/s41467-023-42852-9 Pubmed: 37935699 ]

EMD-34714
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Cryo-EM structure of nucleotide-bound ComA E647Q mutant
Release date: Oct. 4, 2023
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8hf6
Q-score: 0.497

Yu L, Xu X, Chua WZ, Feng H, Ser Z, Shao K, Shi J, Wang Y, Li Z, Sobota RM, Sham LT, Luo M

Nat Commun (2023) 14 pp. 7178-7178 [ DOI: doi:10.1038/s41467-023-42852-9 Pubmed: 37935699 ]

EMD-0967
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AAA ATPase, ClpL from Streptococcus pneumoniae: ATPrS-bound
Release date: Jan. 27, 2021
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6lt4
Q-score: 0.227

Kim G, Lee SG, Han S, Jung J, Jeong HS, Hyun JK, Rhee DK, Kim HM, Lee S

FASEB J (2020) 34 pp. 14353-14370 [ Pubmed: 32910525 DOI: doi:10.1096/fj.202000843R ]

EMD-4118
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CryoEM structure of the membrane pore complex of Pneumolysin at 4.5A
Release date: April 5, 2017
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 5ly6
Q-score: 0.259

van Pee K, Neuhaus A, D'Imprima E, Mills DJ, Kuhlbrandt W, Yildiz O

eLife (2017) 6 [ Pubmed: 28323617 DOI: doi:10.7554/eLife.23644 ]

Sort by: Download
Showing 1 - 7 of 7. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Protein [7]
  • Complex [5]
  • Ligand [5]
  • Cellular component [2]

Organism

  • Streptococcus pneumoniae [7]
  • Streptococcus pneumoniae [3]

EM Method

  • Single-particle [7]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [2]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [5]
  • 1-2 MDa [1]

Release Date

  • 2023 [5]
  • 2021 [1]
  • 2017 [1]

Author by name

  • Chua WZ [5]
  • Feng H [5]
  • Li Z [5]
  • Luo M [5]
  • Min L [5]
  • Ser Z [5]
  • Sham LT [5]
  • Shao K [5]
  • Shi J [5]
  • Sobota RM [5]
  • Wang Y [5]
  • Xin X [5]
  • Xu X [5]
  • Yu L [5]
  • D Imprima E [1]
  • Han S [1]
  • Hyun JK [1]
  • Jeong HS [1]
  • Jung J [1]
  • Kim G [1]
  • Kim HM [1]
  • Kuhlbrandt W [1]
  • Lee S [1]
  • Lee SG [1]
  • Mills DJ [1]
  • Neuhaus A [1]
  • Rhee DK [1]
  • Seong-gyu L [1]
  • Yildiz O [1]
  • Van Pee K [1]

Author by ORCID

  • Sham LT [5]
  • Chua WZ [5]
  • Li Z [5]
  • Sobota RM [5]
  • Luo M [5]
  • Ser Z [5]
  • Feng H [5]
  • Kuhlbrandt W [1]
  • D'imprima E [1]
  • Neuhaus A [1]
  • Mills DJ [1]
  • Hyun JK [1]
  • Yildiz O [1]

Journal

  • NAT COMMUN [5]
  • ELIFE [1]
  • FASEB J [1]

Software

  • RELION [1]

Microscope

  • FEI TITAN KRIOS [6]
  • FEI POLARA 300 [1]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • GATAN K3 6K X 4K [5]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • AlphaFold DB [7]
  • PDB [7]
  • UniProt [7]
  • ChEBI [5]
  • ChEMBL [5]
  • DrugBank [5]
  • Gene Ontology [4]
  • InterPro [4]
  • PDBe-Kb [4]
  • Pfam [4]