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natural_source_ncbi_code:"366501"

Filter By

Current Database

  • EMDB [55]

Current status

  • REL [55]

Sample type

  • Complex [51]
  • Cell [3]
  • Protein [2]
  • Cellular component [1]

Organism

  • Dictyostelium discoideum [55]

EM Method

  • Subtomogram averaging [48]
  • Single-particle [4]
  • Tomography [3]

Resolution

  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [8]
  • ≥ 12Å and < 16Å [3]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [6]
  • ≥ 30Å [24]

Model molecular weight

  • 500-1000 kDa [1]
  • 1-2 MDa [1]

Release Date

  • 2025 [4]
  • 2024 [36]
  • 2022 [13]
  • 2019 [2]

Author by name

  • Beck M [49]
  • Kreysing JP [49]
  • Hoffmann PC [46]
  • Cruz-leon S [36]
  • Hummer G [36]
  • Turonova B [36]
  • Andino-frydman E [33]
  • Cernikova L [33]
  • Kim H [33]
  • Kosinski J [33]
  • Margiotta E [33]
  • Obarska-kosinska A [33]
  • Tuijtel MW [16]
  • Welsch S [16]
  • Khusainov I [13]
  • Hoogerbrugge G [4]
  • Keatinge-clay AT [4]
  • Marcotte EM [4]
  • Baumeister W [2]
  • Beck F [2]
  • Ecke M [2]
  • Fukuda Y [2]
  • Gerisch G [2]
  • Jasnin M [2]
  • Martinez-sanchez A [2]
  • Kreysing J [1]

Author by ORCID

  • Kreysing JP [49]
  • Hoffmann PC [46]
  • Hummer G [36]
  • Obarska-kosinska A [33]
  • Kosinski J [33]
  • Andino-frydman E [33]
  • Tuijtel MW [16]
  • Welsch S [16]
  • Beck M [16]
  • Khusainov I [13]
  • Hoogerbrugge G [4]
  • Marcotte EM [4]
  • Keatinge-clay AT [4]
  • Turonova B [3]
  • Cruz-leon S [3]
  • Martinez-sanchez A [2]
  • Jasnin M [2]
  • Fukuda Y [2]

Journal

  • MOL CELL [33]
  • NAT COMMUN [13]
  • TO BE PUBLISHED [4]
  • BIORXIV [3]
  • SCI ADV [3]
  • STRUCTURE [2]

Software

  • RELION [11]
  • WARP [3]
  • PYTOM [2]

Microscope

  • FEI TITAN KRIOS [43]
  • TFS KRIOS [8]
  • TFS GLACIOS [4]

Electron Source

  • FIELD EMISSION GUN [55]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [45]
  • FEI FALCON IV 4K X 4K [8]
  • GATAN K2 SUMMIT 4K X 4K [2]

External links

  • EMPIAR [3]
  • AlphaFold DB [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDB [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]
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Showing 1 - 10 of 55. Page 1 of 6
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EMD-49490
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3D View
Structure of native octahedral assembly of D. discoideum Odo2
Release date: March 12, 2025
Resolution: 5.72 Å
EM Method: Single-particle
Fitted PDBs: 9njt
Q-score: 0.325

Hoogerbrugge G, Keatinge-Clay AT, Marcotte EM

To Be Published

EMD-49491
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3D View
Structure of native homodimer of D. discoideum polyketide synthase Pks16
Release date: March 12, 2025
Resolution: 3.94 Å
EM Method: Single-particle
Fitted PDBs: 9nju
Q-score: 0.362

Hoogerbrugge G, Keatinge-Clay AT, Marcotte EM

To Be Published

EMD-49492
Download Map
3D View
Hexameric star complex from D. discoideum
Release date: March 12, 2025
Resolution: 15.19 Å
EM Method: Single-particle

Hoogerbrugge G, Keatinge-Clay AT, Marcotte EM

To Be Published

EMD-49493
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3D View
20S proteasome complex from D. discoideum
Release date: March 12, 2025
Resolution: 9.52 Å
EM Method: Single-particle

Hoogerbrugge G, Keatinge-Clay AT, Marcotte EM

To Be Published

EMD-19137
Composite map
Download Map
3D View
Raw data
EMPIAR-11845
Composite structure of the Dictyostelium discoideum nuclear pore complex in cells
Release date: Dec. 25, 2024
Resolution: 30.0 Å
EM Method: Subtomogram averaging

Hoffmann PC, Kim H, Obarska-Kosinska A, Kreysing JP, Andino-Frydman E, Cruz-Leon S, Margiotta E, Cernikova L, Kosinski J, Turonova B, Hummer G, Beck M

Mol Cell (2025) 85 pp. 537-554.e11 [ Pubmed: 39729993 DOI: doi:10.1016/j.molcel.2024.11.038 ]

EMD-19139
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3D View
Asymmetric subunit of the Dictyostelium discoideum nuclear pore complex
Release date: Dec. 25, 2024
Resolution: 36.0 Å
EM Method: Subtomogram averaging

Hoffmann PC, Kim H, Obarska-Kosinska A, Kreysing JP, Andino-Frydman E, Cruz-Leon S, Margiotta E, Cernikova L, Kosinski J, Turonova B, Hummer G, Beck M

Mol Cell (2025) 85 pp. 537-554.e11 [ Pubmed: 39729993 DOI: doi:10.1016/j.molcel.2024.11.038 ]

EMD-19140
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3D View
Inner ring segment of the Dictyostelium discoideum nuclear pore complex
Release date: Dec. 25, 2024
Resolution: 25.0 Å
EM Method: Subtomogram averaging

Hoffmann PC, Kim H, Obarska-Kosinska A, Kreysing JP, Andino-Frydman E, Cruz-Leon S, Margiotta E, Cernikova L, Kosinski J, Turonova B, Hummer G, Beck M

Mol Cell (2025) 85 pp. 537-554.e11 [ Pubmed: 39729993 DOI: doi:10.1016/j.molcel.2024.11.038 ]

EMD-19141
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3D View
Cytoplasmic ring segment of the Dictyostelium discoideum nuclear pore complex
Release date: Dec. 25, 2024
Resolution: 26.0 Å
EM Method: Subtomogram averaging

Hoffmann PC, Kim H, Obarska-Kosinska A, Kreysing JP, Andino-Frydman E, Cruz-Leon S, Margiotta E, Cernikova L, Kosinski J, Turonova B, Hummer G, Beck M

Mol Cell (2025) 85 pp. 537-554.e11 [ Pubmed: 39729993 DOI: doi:10.1016/j.molcel.2024.11.038 ]

EMD-19142
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3D View
Nuclear ring segment of the Dictyostelium discoideum nuclear pore complex
Release date: Dec. 25, 2024
Resolution: 23.0 Å
EM Method: Subtomogram averaging

Hoffmann PC, Kim H, Obarska-Kosinska A, Kreysing JP, Andino-Frydman E, Cruz-Leon S, Margiotta E, Cernikova L, Kosinski J, Turonova B, Hummer G, Beck M

Mol Cell (2025) 85 pp. 537-554.e11 [ Pubmed: 39729993 DOI: doi:10.1016/j.molcel.2024.11.038 ]

EMD-19143
Download Map
3D View
Lumenal ring segment of the Dictyostelium discoideum nuclear pore complex
Release date: Dec. 25, 2024
Resolution: 27.0 Å
EM Method: Subtomogram averaging

Hoffmann PC, Kim H, Obarska-Kosinska A, Kreysing JP, Andino-Frydman E, Cruz-Leon S, Margiotta E, Cernikova L, Kosinski J, Turonova B, Hummer G, Beck M

Mol Cell (2025) 85 pp. 537-554.e11 [ Pubmed: 39729993 DOI: doi:10.1016/j.molcel.2024.11.038 ]

Sort by: Download
Showing 1 - 10 of 55. Page 1 of 6
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [55]

Current status

  • REL [55]

Sample type

  • Complex [51]
  • Cell [3]
  • Protein [2]
  • Cellular component [1]

Organism

  • Dictyostelium discoideum [55]

EM Method

  • Subtomogram averaging [48]
  • Single-particle [4]
  • Tomography [3]

Resolution

  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [8]
  • ≥ 12Å and < 16Å [3]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [6]
  • ≥ 30Å [24]

Model molecular weight

  • 500-1000 kDa [1]
  • 1-2 MDa [1]

Release Date

  • 2025 [4]
  • 2024 [36]
  • 2022 [13]
  • 2019 [2]

Author by name

  • Beck M [49]
  • Kreysing JP [49]
  • Hoffmann PC [46]
  • Cruz-leon S [36]
  • Hummer G [36]
  • Turonova B [36]
  • Andino-frydman E [33]
  • Cernikova L [33]
  • Kim H [33]
  • Kosinski J [33]
  • Margiotta E [33]
  • Obarska-kosinska A [33]
  • Tuijtel MW [16]
  • Welsch S [16]
  • Khusainov I [13]
  • Hoogerbrugge G [4]
  • Keatinge-clay AT [4]
  • Marcotte EM [4]
  • Baumeister W [2]
  • Beck F [2]
  • Ecke M [2]
  • Fukuda Y [2]
  • Gerisch G [2]
  • Jasnin M [2]
  • Martinez-sanchez A [2]
  • Kreysing J [1]

Author by ORCID

  • Kreysing JP [49]
  • Hoffmann PC [46]
  • Hummer G [36]
  • Obarska-kosinska A [33]
  • Kosinski J [33]
  • Andino-frydman E [33]
  • Tuijtel MW [16]
  • Welsch S [16]
  • Beck M [16]
  • Khusainov I [13]
  • Hoogerbrugge G [4]
  • Marcotte EM [4]
  • Keatinge-clay AT [4]
  • Turonova B [3]
  • Cruz-leon S [3]
  • Martinez-sanchez A [2]
  • Jasnin M [2]
  • Fukuda Y [2]

Journal

  • MOL CELL [33]
  • NAT COMMUN [13]
  • TO BE PUBLISHED [4]
  • BIORXIV [3]
  • SCI ADV [3]
  • STRUCTURE [2]

Software

  • RELION [11]
  • WARP [3]
  • PYTOM [2]

Microscope

  • FEI TITAN KRIOS [43]
  • TFS KRIOS [8]
  • TFS GLACIOS [4]

Electron Source

  • FIELD EMISSION GUN [55]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [45]
  • FEI FALCON IV 4K X 4K [8]
  • GATAN K2 SUMMIT 4K X 4K [2]

External links

  • EMPIAR [3]
  • AlphaFold DB [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDB [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]