Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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natural_source_ncbi_code:"35688"

Filter By

Current Database

  • EMDB [52]

Current status

  • REL [52]

Sample type

  • Complex [41]
  • Cell [11]
  • Ligand [10]
  • Protein [10]

Organism

  • Porphyridium purpureum [52]
  • Gloeobacter violaceus [1]

EM Method

  • Single-particle [44]
  • Tomography [5]
  • Subtomogram averaging [3]

Resolution

  • ≥ 2Å and < 3Å [15]
  • ≥ 3Å and < 4Å [20]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [3]
  • ≥ 12Å and < 16Å [3]

Model molecular weight

  • 250-500 kDa [1]
  • 5-10 MDa [1]
  • > 10 MDa [5]

Release Date

  • 2025 [1]
  • 2024 [4]
  • 2023 [11]
  • 2022 [23]
  • 2019 [13]

Author by name

  • Sui SF [51]
  • Sun S [43]
  • Ma JF [37]
  • Ma J [32]
  • You X [28]
  • Sui S-F [22]
  • Adir N [16]
  • Dodson EJ [16]
  • Keren N [16]
  • Maroudas-sklare N [16]
  • Paltiel Y [16]
  • Suissa Szlejf M [16]
  • Qin S [14]
  • Wang XX [14]
  • Cheng J [9]
  • Zhang X [9]
  • Xiao YN [8]
  • Li MJ [7]
  • Li XM [7]
  • Li M [6]
  • Li X [6]
  • Wang HW [5]
  • Xiao Y [5]
  • Li M-J [1]
  • Li X-M [1]
  • Liu T [1]
  • Ma J-F [1]
  • Wan X [1]
  • Zhang F [1]

Author by ORCID

  • Sui SF [28]
  • Ma JF [14]
  • Ma J [13]
  • You X [7]
  • Sun S [7]
  • Zhang X [6]
  • Cheng J [6]
  • Li M [6]
  • Xiao Y [5]
  • Wang HW [5]
  • Maroudas-sklare N [1]
  • Keren N [1]
  • Paltiel Y [1]
  • Wan X [1]
  • Adir N [1]
  • Suissa Szlejf M [1]

Journal

  • NATURE [19]
  • COMMUN BIOL [16]
  • ELIFE [6]
  • NAT COMMUN [6]
  • TO BE PUBLISHED [5]

Software

  • RELION [36]
  • CTFFIND [19]
  • CRYOSPARC [1]

Microscope

  • FEI TITAN KRIOS [51]
  • FEI TECNAI F30 [1]

Electron Source

  • FIELD EMISSION GUN [52]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [43]
  • GATAN K3 6K X 4K [9]

External links

  • PDB [10]
  • ChEBI [8]
  • AlphaFold DB [7]
  • Gene Ontology [7]
  • PDBe-Kb [7]
  • Pfam [7]
  • UniProt [7]
  • ChEMBL [6]
  • DrugBank [6]
  • InterPro [6]
  • SCOP2 [1]
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Showing 1 - 10 of 52. Page 1 of 6
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EMD-62201
Download Map
3D View
structure of bundle-shaped PBS with short rod
Release date: Dec. 3, 2025
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9k9w

Ma J, You X, Sun S, Sui SF

Nat Commun (2025) 16 pp. 5956-5956 [ Pubmed: 40593595 DOI: doi:10.1038/s41467-025-60673-w ]

EMD-35801
Download Map
3D View
Rod1 Local map of bundle-shaped PBS with short rod
Release date: Oct. 16, 2024
Resolution: 2.76 Å
EM Method: Single-particle

Ma J, You X, Sun S, Sui SF

Nat Commun (2025) 16 pp. 5956- [ DOI: doi:10.1038/s41467-025-60673-w ]

EMD-35802
Download Map
3D View
Rod2 Local map of bundle-shaped PBS with short rod
Release date: Oct. 16, 2024
Resolution: 3.08 Å
EM Method: Single-particle

Ma J, You X, Sun S, Sui SF

Nat Commun (2025) 16 pp. 5956- [ DOI: doi:10.1038/s41467-025-60673-w ]

EMD-35803
Download Map
3D View
Rod3 Local map of bundle-shaped PBS with short rod
Release date: Oct. 16, 2024
Resolution: 3.49 Å
EM Method: Single-particle

Ma J, You X, Sun S, Sui SF

Nat Commun (2025) 16 pp. 5956- [ DOI: doi:10.1038/s41467-025-60673-w ]

EMD-35804
Download Map
3D View
Rod4 Local map of bundle-shaped PBS with short rod
Release date: Oct. 16, 2024
Resolution: 2.8 Å
EM Method: Single-particle

Ma J, You X, Sun S, Sui SF

Nat Commun (2025) 16 pp. 5956- [ DOI: doi:10.1038/s41467-025-60673-w ]

EMD-34529
Download Map
3D View
Un-sharpened map of phycobilisome from Porphyridium purpureum under low light
Release date: Oct. 25, 2023
Resolution: 3.74 Å
EM Method: Single-particle

Ma JF, You X, Sun S, Wang XX, Qin S, Sui SF

Nature (2020) 579 pp. 146-151 [ DOI: doi:10.1038/s41586-020-2020-7 Pubmed: 32076272 ]

EMD-34534
Download Map
3D View
Un-sharpened map of phycobilisome from Porphyridium purpureum under Middle light
Release date: Oct. 25, 2023
Resolution: 3.6 Å
EM Method: Single-particle

Dodson EJ, Ma J, Suissa Szlejf M, Maroudas-Sklare N, Paltiel Y, Adir N, Sun S, Sui SF, Keren N

Commun Biol (2023) 6 pp. 1210-1210 [ DOI: doi:10.1038/s42003-023-05586-4 Pubmed: 38012412 ]

EMD-33669
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3D View
In situ double-PBS-PSII-PSI-LHCs megacomplex from red alga Porphyridium purpureum.
Release date: July 12, 2023
Resolution: 4.3 Å
EM Method: Single-particle

You X, Zhang X, Cheng J, Xiao Y, Ma J, Sun S, Zhang X, Wang HW, Sui SF

Nature (2023) 616 pp. 199-206 [ Pubmed: 36922595 DOI: doi:10.1038/s41586-023-05831-0 ]

EMD-35976
Download Map
3D View
Structure of in situ PSII from P. purpureum lamellae by GisSPA
Release date: June 21, 2023
Resolution: 3.9 Å
EM Method: Single-particle

Cheng J, Liu T, You X, Zhang F, Sui SF, Wan X, Zhang X

Nat Commun (2023) 14 pp. 1282-1282 [ DOI: doi:10.1038/s41467-023-36175-y Pubmed: 36922493 ]

EMD-33658
Download Map
3D View
In situ double-PBS-PSII-PSI-LHCs megacomplex from Porphyridium purpureum.
Release date: Feb. 8, 2023
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7y7a

You X, Zhang X, Cheng J, Xiao Y, Ma J, Sun S, Zhang X, Wang HW, Sui SF

Nature (2023) 616 pp. 199-206 [ Pubmed: 36922595 DOI: doi:10.1038/s41586-023-05831-0 ]

Sort by: Download
Showing 1 - 10 of 52. Page 1 of 6
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [52]

Current status

  • REL [52]

Sample type

  • Complex [41]
  • Cell [11]
  • Ligand [10]
  • Protein [10]

Organism

  • Porphyridium purpureum [52]
  • Gloeobacter violaceus [1]

EM Method

  • Single-particle [44]
  • Tomography [5]
  • Subtomogram averaging [3]

Resolution

  • ≥ 2Å and < 3Å [15]
  • ≥ 3Å and < 4Å [20]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [3]
  • ≥ 12Å and < 16Å [3]

Model molecular weight

  • 250-500 kDa [1]
  • 5-10 MDa [1]
  • > 10 MDa [5]

Release Date

  • 2025 [1]
  • 2024 [4]
  • 2023 [11]
  • 2022 [23]
  • 2019 [13]

Author by name

  • Sui SF [51]
  • Sun S [43]
  • Ma JF [37]
  • Ma J [32]
  • You X [28]
  • Sui S-F [22]
  • Adir N [16]
  • Dodson EJ [16]
  • Keren N [16]
  • Maroudas-sklare N [16]
  • Paltiel Y [16]
  • Suissa Szlejf M [16]
  • Qin S [14]
  • Wang XX [14]
  • Cheng J [9]
  • Zhang X [9]
  • Xiao YN [8]
  • Li MJ [7]
  • Li XM [7]
  • Li M [6]
  • Li X [6]
  • Wang HW [5]
  • Xiao Y [5]
  • Li M-J [1]
  • Li X-M [1]
  • Liu T [1]
  • Ma J-F [1]
  • Wan X [1]
  • Zhang F [1]

Author by ORCID

  • Sui SF [28]
  • Ma JF [14]
  • Ma J [13]
  • You X [7]
  • Sun S [7]
  • Zhang X [6]
  • Cheng J [6]
  • Li M [6]
  • Xiao Y [5]
  • Wang HW [5]
  • Maroudas-sklare N [1]
  • Keren N [1]
  • Paltiel Y [1]
  • Wan X [1]
  • Adir N [1]
  • Suissa Szlejf M [1]

Journal

  • NATURE [19]
  • COMMUN BIOL [16]
  • ELIFE [6]
  • NAT COMMUN [6]
  • TO BE PUBLISHED [5]

Software

  • RELION [36]
  • CTFFIND [19]
  • CRYOSPARC [1]

Microscope

  • FEI TITAN KRIOS [51]
  • FEI TECNAI F30 [1]

Electron Source

  • FIELD EMISSION GUN [52]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [43]
  • GATAN K3 6K X 4K [9]

External links

  • PDB [10]
  • ChEBI [8]
  • AlphaFold DB [7]
  • Gene Ontology [7]
  • PDBe-Kb [7]
  • Pfam [7]
  • UniProt [7]
  • ChEMBL [6]
  • DrugBank [6]
  • InterPro [6]
  • SCOP2 [1]