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natural_source_ncbi_code:"32046"

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Current Database

  • EMDB [19]

Current status

  • REL [19]

Sample type

  • Protein [17]
  • Complex [15]
  • Ligand [11]
  • DNA [5]
  • Sample [4]
  • RNA [2]

Organism

  • Synechococcus elongatus [19]
  • Synthetic construct [5]
  • Synechococcus elongatus [3]
  • Anabaena sp. [1]

EM Method

  • Single-particle [19]

Resolution

  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 16Å and < 20Å [3]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [10]
  • 500-1000 kDa [5]

Release Date

  • 2025 [7]
  • 2023 [3]
  • 2021 [3]
  • 2017 [2]
  • 2013 [1]
  • 2010 [3]

Author by name

  • Liwang A [7]
  • Leanca M [6]
  • Partch CL [6]
  • Yuzenkova Y [6]
  • Corbett KD [4]
  • Fang M [4]
  • Golden SE [4]
  • Gu Y [4]
  • Lander GC [4]
  • Matyszewski M [4]
  • Sandate CR [4]
  • Balasco Serrao Vh [3]
  • Beckmann R [3]
  • Berninghausen O [3]
  • Bracher A [3]
  • Chavan AG [3]
  • Dzimianski JV [3]
  • Ernst DC [3]
  • Etwaru D [3]
  • Freeberg AM [3]
  • Golden SS [3]
  • Hartl FU [3]
  • Hayer-hartl M [3]
  • Liu C [3]
  • Mielke T [3]
  • Palacios JG [3]
  • Rao BV [3]
  • Rao KV [3]
  • Saschenbrecker S [3]
  • Starling-windhof A [3]
  • Swan JA [3]
  • Young AL [3]
  • Axmann IM [2]
  • Bradley Riaz A [2]
  • Crosby P [2]
  • Forster F [2]
  • Heck AJ [2]
  • Imashimizu M [2]
  • Lossl P [2]
  • Murakami KS [2]
  • Plitzko JM [2]
  • Qayyum MZ [2]
  • Riaz-bradley A [2]
  • Schmelling N [2]
  • Schuller JM [2]
  • Snijder J [2]
  • Vishwakarma RK [2]
  • Wiegard A [2]
  • Young A [2]
  • Egli M [1]
  • Foerster F [1]
  • Han X [1]
  • Heck AJR [1]
  • Hong L [1]
  • Johnson CH [1]
  • Loessl P [1]
  • Mori T [1]
  • Ouyang Q [1]
  • Pattanayek R [1]
  • Qin X [1]
  • Rust M [1]
  • Rust MJ [1]
  • Stewart PL [1]
  • Tu Y [1]
  • Tu YH [1]
  • Villarreal SA [1]
  • Williams DR [1]
  • Wu Z [1]
  • Wu ZL [1]
  • Yang T [1]
  • Yu D [1]
  • Yu DQ [1]
  • Zhang D [1]
  • Zhang DL [1]

Author by ORCID

  • Liwang A [7]
  • Partch CL [6]
  • Corbett KD [4]
  • Gu Y [4]
  • Golden SE [4]
  • Sandate CR [4]
  • Matyszewski M [4]
  • Fang M [4]
  • Yuzenkova Y [4]
  • Lander GC [4]
  • Hayer-hartl M [3]
  • Bracher A [3]
  • Dzimianski JV [3]
  • Golden SS [3]
  • Swan JA [3]
  • Saschenbrecker S [3]
  • Chavan AG [3]
  • Balasco Serrao Vh [3]
  • Freeberg AM [3]
  • Lossl P [2]
  • Vishwakarma RK [2]
  • Riaz-bradley A [2]
  • Wiegard A [2]
  • Axmann IM [2]
  • Heck AJ [2]
  • Forster F [2]
  • Plitzko JM [2]
  • Schmelling N [2]
  • Crosby P [2]
  • Schuller JM [2]
  • Snijder J [2]
  • Murakami KS [2]
  • Qayyum MZ [2]
  • Leanca M [2]
  • Mori T [1]

Journal

  • TO BE PUBLISHED [7]
  • NAT STRUCT MOL BIOL [3]
  • NATURE [3]
  • PNAS [2]
  • SCIENCE [2]
  • J MOL BIOL [1]
  • NAT COMMUN [1]

Software

  • RELION [5]
  • CRYOSPARC [4]
  • EMAN1 [3]
  • CHIMERA [1]
  • CTFFIND [1]
  • FREALIGN, RUBINSTEIN_2_REFINEMENT_PACKAGE, IMAGIC [1]
  • MANUAL [1]

Microscope

  • TFS KRIOS [6]
  • FEI TITAN KRIOS [5]
  • FEI TALOS ARCTICA [4]
  • FEI TECNAI 12 [2]
  • FEI POLARA 300 [1]
  • FEI TECNAI F30 [1]

Electron Source

  • FIELD EMISSION GUN [17]
  • LAB6 [2]

Film or detector model

  • FEI FALCON IV 4K X 4K [7]
  • GATAN K2 SUMMIT 4K X 4K [7]
  • FEI EAGLE 2K X 2K [2]
  • GATAN K3 BIOCONTINUUM 6K X 4K [1]
  • GATAN ULTRASCAN 4000 4K X 4K [1]
  • KODAK SO-163 FILM [1]

External links

  • PDB [16]
  • AlphaFold DB [15]
  • PDBe-Kb [15]
  • UniProt [15]
  • Gene Ontology [13]
  • Pfam [13]
  • ChEBI [11]
  • ChEMBL [11]
  • DrugBank [11]
  • InterPro [11]
Sort by: Download
Showing 1 - 10 of 19. Page 1 of 2
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EMD-47312
Download Map
3D View
Consensus map for the composite map of RpaA bound to PkaiBC DNA and Syn7942 RNAP-SigA holoenzyme
Release date: Nov. 12, 2025
Resolution: 3.19 Å
EM Method: Single-particle

Fang M, Gu Y, Leanca M, Matyszewski M, LiWang A, Yuzenkova Y, Corbett KD, Golden SE

To Be Published

EMD-47221
Download Map
3D View
CryoEM structure of Syn7942 RNAP-SigA holoenzyme
Release date: Oct. 15, 2025
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 9dvs
Q-score: 0.511

Fang M, Gu Y, Leanca M, Matyszewski M, LiWang A, Yuzenkova Y, Corbett KD, Golden SE

To Be Published

EMD-47222
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3D View
Cryo-EM structure of RpaA bound to PkaiBC DNA and the CTD of the alpha subunit of RNAP from the cyanobacterium Synechococcus elongatus
Release date: Oct. 15, 2025
Resolution: 3.74 Å
EM Method: Single-particle
Fitted PDBs: 9dvt
Q-score: 0.317

Fang M, Gu Y, Leanca M, Matyszewski M, LiWang A, Yuzenkova Y, Corbett KD, Golden SE

To Be Published

EMD-47223
Composite map
Download Map
3D View
CryoEM structure of RpaA bound to PkaiBC DNA and Syn7942 RNAP-SigA holoenzyme
Release date: Oct. 15, 2025
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9dvu
Q-score: 0.435

Fang M, Gu Y, Leanca M, Matyszewski M, LiWang A, Yuzenkova Y, Corbett KD, Golden SE

To Be Published

EMD-70431
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3D View
CI ring of daytime state KaiC
Release date: May 14, 2025
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 9ofg
Q-score: 0.452

Dzimianski JV, Sandate CR, Balasco Serrao VH, Lander GC, Partch CL

To Be Published

EMD-70432
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Extended conformation of dusk state KaiC
Release date: May 14, 2025
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9ofh
Q-score: 0.501

Dzimianski JV, Crosby P, Balasco Serrao VH, Partch CL

To Be Published

EMD-70434
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3D View
CI ring of dusk state KaiC
Release date: May 14, 2025
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 9ofj
Q-score: 0.475

Dzimianski JV, Crosby P, Balasco Serrao VH, Partch CL

To Be Published

EMD-42502
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Cyanobacterial RNA polymerase elongation complex with NusG and CTP
Release date: Dec. 27, 2023
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 8urw
Q-score: 0.515

Qayyum MZ, Imashimizu M, Leanca M, Vishwakarma RK, Riaz-Bradley A, Yuzenkova Y, Murakami KS

PNAS (2024) 121 pp. e2311480121-e2311480121 [ Pubmed: 38354263 DOI: doi:10.1073/pnas.2311480121 ]

EMD-40874
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3D View
Cyanobacterial RNAP-EC
Release date: July 5, 2023
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8syi
Q-score: 0.491

Qayyum MZ, Imashimizu M, Leanca M, Vishwakarma RK, Riaz-Bradley A, Yuzenkova Y, Murakami KS

PNAS (2024) 121 pp. e2311480121-e2311480121 [ Pubmed: 38354263 DOI: doi:10.1073/pnas.2311480121 ]

EMD-32953
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Structure of the phosphorylation-site double mutant S431E/T432E of the KaiC circadian clock protein
Release date: April 19, 2023
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7x1z
Q-score: 0.5

Han X, Zhang D, Hong L, Yu D, Wu Z, Yang T, Rust M, Tu Y, Ouyang Q

Nat Commun (2023) 14 pp. 5907- [ DOI: doi:10.1038/s41467-023-41575-1 ]

Sort by: Download
Showing 1 - 10 of 19. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [19]

Current status

  • REL [19]

Sample type

  • Protein [17]
  • Complex [15]
  • Ligand [11]
  • DNA [5]
  • Sample [4]
  • RNA [2]

Organism

  • Synechococcus elongatus [19]
  • Synthetic construct [5]
  • Synechococcus elongatus [3]
  • Anabaena sp. [1]

EM Method

  • Single-particle [19]

Resolution

  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 16Å and < 20Å [3]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [10]
  • 500-1000 kDa [5]

Release Date

  • 2025 [7]
  • 2023 [3]
  • 2021 [3]
  • 2017 [2]
  • 2013 [1]
  • 2010 [3]

Author by name

  • Liwang A [7]
  • Leanca M [6]
  • Partch CL [6]
  • Yuzenkova Y [6]
  • Corbett KD [4]
  • Fang M [4]
  • Golden SE [4]
  • Gu Y [4]
  • Lander GC [4]
  • Matyszewski M [4]
  • Sandate CR [4]
  • Balasco Serrao Vh [3]
  • Beckmann R [3]
  • Berninghausen O [3]
  • Bracher A [3]
  • Chavan AG [3]
  • Dzimianski JV [3]
  • Ernst DC [3]
  • Etwaru D [3]
  • Freeberg AM [3]
  • Golden SS [3]
  • Hartl FU [3]
  • Hayer-hartl M [3]
  • Liu C [3]
  • Mielke T [3]
  • Palacios JG [3]
  • Rao BV [3]
  • Rao KV [3]
  • Saschenbrecker S [3]
  • Starling-windhof A [3]
  • Swan JA [3]
  • Young AL [3]
  • Axmann IM [2]
  • Bradley Riaz A [2]
  • Crosby P [2]
  • Forster F [2]
  • Heck AJ [2]
  • Imashimizu M [2]
  • Lossl P [2]
  • Murakami KS [2]
  • Plitzko JM [2]
  • Qayyum MZ [2]
  • Riaz-bradley A [2]
  • Schmelling N [2]
  • Schuller JM [2]
  • Snijder J [2]
  • Vishwakarma RK [2]
  • Wiegard A [2]
  • Young A [2]
  • Egli M [1]
  • Foerster F [1]
  • Han X [1]
  • Heck AJR [1]
  • Hong L [1]
  • Johnson CH [1]
  • Loessl P [1]
  • Mori T [1]
  • Ouyang Q [1]
  • Pattanayek R [1]
  • Qin X [1]
  • Rust M [1]
  • Rust MJ [1]
  • Stewart PL [1]
  • Tu Y [1]
  • Tu YH [1]
  • Villarreal SA [1]
  • Williams DR [1]
  • Wu Z [1]
  • Wu ZL [1]
  • Yang T [1]
  • Yu D [1]
  • Yu DQ [1]
  • Zhang D [1]
  • Zhang DL [1]

Author by ORCID

  • Liwang A [7]
  • Partch CL [6]
  • Corbett KD [4]
  • Gu Y [4]
  • Golden SE [4]
  • Sandate CR [4]
  • Matyszewski M [4]
  • Fang M [4]
  • Yuzenkova Y [4]
  • Lander GC [4]
  • Hayer-hartl M [3]
  • Bracher A [3]
  • Dzimianski JV [3]
  • Golden SS [3]
  • Swan JA [3]
  • Saschenbrecker S [3]
  • Chavan AG [3]
  • Balasco Serrao Vh [3]
  • Freeberg AM [3]
  • Lossl P [2]
  • Vishwakarma RK [2]
  • Riaz-bradley A [2]
  • Wiegard A [2]
  • Axmann IM [2]
  • Heck AJ [2]
  • Forster F [2]
  • Plitzko JM [2]
  • Schmelling N [2]
  • Crosby P [2]
  • Schuller JM [2]
  • Snijder J [2]
  • Murakami KS [2]
  • Qayyum MZ [2]
  • Leanca M [2]
  • Mori T [1]

Journal

  • TO BE PUBLISHED [7]
  • NAT STRUCT MOL BIOL [3]
  • NATURE [3]
  • PNAS [2]
  • SCIENCE [2]
  • J MOL BIOL [1]
  • NAT COMMUN [1]

Software

  • RELION [5]
  • CRYOSPARC [4]
  • EMAN1 [3]
  • CHIMERA [1]
  • CTFFIND [1]
  • FREALIGN, RUBINSTEIN_2_REFINEMENT_PACKAGE, IMAGIC [1]
  • MANUAL [1]

Microscope

  • TFS KRIOS [6]
  • FEI TITAN KRIOS [5]
  • FEI TALOS ARCTICA [4]
  • FEI TECNAI 12 [2]
  • FEI POLARA 300 [1]
  • FEI TECNAI F30 [1]

Electron Source

  • FIELD EMISSION GUN [17]
  • LAB6 [2]

Film or detector model

  • FEI FALCON IV 4K X 4K [7]
  • GATAN K2 SUMMIT 4K X 4K [7]
  • FEI EAGLE 2K X 2K [2]
  • GATAN K3 BIOCONTINUUM 6K X 4K [1]
  • GATAN ULTRASCAN 4000 4K X 4K [1]
  • KODAK SO-163 FILM [1]

External links

  • PDB [16]
  • AlphaFold DB [15]
  • PDBe-Kb [15]
  • UniProt [15]
  • Gene Ontology [13]
  • Pfam [13]
  • ChEBI [11]
  • ChEMBL [11]
  • DrugBank [11]
  • InterPro [11]