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natural_source_ncbi_code:"31330"

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Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Complex [7]
  • Protein [6]
  • RNA [6]
  • Ligand [4]

Organism

  • Ephydatia fluviatilis [7]
  • Homo sapiens [4]
  • Synthetic construct [3]

EM Method

  • Single-particle [7]

Resolution

  • ≥ 3Å and < 4Å [6]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [5]

Release Date

  • 2024 [4]
  • 2021 [3]

Author by name

  • Li Z [4]
  • Li ZQ [4]
  • Shen EZ [4]
  • Wu J [4]
  • Wu JP [4]
  • Xu Q [4]
  • Xue J [4]
  • Zhang Y [4]
  • Zhang Z [4]
  • Zhong J [4]
  • Anzelon TA [3]
  • Chowdhury S [3]
  • Hughes SM [3]
  • Lander GC [3]
  • Macrae IJ [3]
  • Xiao Y [3]
  • Gui M [2]
  • Huang J [2]
  • Huang Y [2]
  • Li D [2]
  • Li L [2]
  • Li X [2]
  • Liu HB [2]
  • Lu X [2]
  • Niu H [2]
  • Song CQ [2]
  • Tu S [2]
  • Wan L [2]
  • Xu QK [2]
  • Ying X [2]
  • Yu Q [2]
  • Zeng L [2]
  • Zhang T [2]
  • Zhen Y [2]
  • Zhou L [2]

Author by ORCID

  • Li Z [4]
  • Wu J [4]
  • Zhang Z [4]
  • Shen EZ [4]
  • Chowdhury S [3]
  • Macrae IJ [3]
  • Lander GC [3]
  • Tu S [2]
  • Zeng L [2]
  • Zhen Y [2]
  • Gui M [2]
  • Huang J [2]
  • Yu Q [2]
  • Niu H [2]
  • Song CQ [2]
  • Lu X [2]
  • Zhang Y [2]
  • Zhong J [2]

Journal

  • NATURE [5]
  • NAT STRUCT MOL BIOL [2]

Software

  • CTFFIND [3]
  • RELION [3]

Microscope

  • FEI TITAN KRIOS [4]
  • FEI TALOS ARCTICA [3]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [3]
  • GATAN K3 6K X 4K [2]
  • TFS FALCON 4I 4K X 4K [2]

External links

  • AlphaFold DB [6]
  • Gene Ontology [6]
  • InterPro [6]
  • PDB [6]
  • PDBe-Kb [6]
  • Pfam [6]
  • UniProt [6]
  • ChEBI [4]
  • DrugBank [4]
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EMD-60609
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3D View
Cryo-EM Structure of EfPiwi-piRNA-target 25-nt, bilobed
Release date: Nov. 13, 2024
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9iiy
Q-score: 0.315

Li Z, Xu Q, Zhong J, Zhang Y, Zhang T, Ying X, Lu X, Li X, Wan L, Xue J, Huang J, Zhen Y, Zhang Z, Wu J, Shen EZ

Nature (2025) 639 pp. 250-259 [ Pubmed: 39814893 DOI: doi:10.1038/s41586-024-08438-1 ]

EMD-60610
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Cryo-EM Structure of EfPiwi-piRNA-target 25-nt, comma
Release date: Nov. 13, 2024
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9iiz
Q-score: 0.214

Li Z, Xu Q, Zhong J, Zhang Y, Zhang T, Ying X, Lu X, Li X, Wan L, Xue J, Huang J, Zhen Y, Zhang Z, Wu J, Shen EZ

Nature (2025) 639 pp. 250-259 [ Pubmed: 39814893 DOI: doi:10.1038/s41586-024-08438-1 ]

EMD-33797
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Cryo-EM structure of the EfPiwi N959K -piRNA-target ternary complex
Release date: Feb. 14, 2024
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7yfq
Q-score: 0.435

Li Z, Li Z, Zhang Y, Zhou L, Xu Q, Li L, Zeng L, Xue J, Niu H, Zhong J, Yu Q, Li D, Gui M, Huang Y, Tu S, Zhang Z, Song CQ, Wu J, Shen EZ

Nat Struct Mol Biol (2024) [ Pubmed: 38658622 DOI: doi:10.1038/s41594-024-01287-6 ]

EMD-33809
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3D View
Cryo-EM structure of the EfPiwi N959K in complex with piRNA
Release date: Jan. 24, 2024
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7yg6
Q-score: 0.399

Li Z, Li Z, Zhang Y, Zhou L, Xu Q, Li L, Zeng L, Xue J, Niu H, Zhong J, Yu Q, Li D, Gui M, Huang Y, Tu S, Zhang Z, Song CQ, Wu J, Shen EZ

Nat Struct Mol Biol (2024) [ Pubmed: 38658622 DOI: doi:10.1038/s41594-024-01287-6 ]

EMD-23061
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Cryo-EM structure of Ephydatia fluviatilis PiwiA-piRNA complex
Release date: July 14, 2021
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7kx7
Q-score: 0.457

Anzelon TA, Chowdhury S, Hughes SM, Xiao Y, Lander GC, MacRae IJ

Nature (2021) 597 pp. 285-289 [ Pubmed: 34471284 DOI: doi:10.1038/s41586-021-03856-x ]

EMD-23062
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Cryo-EM structure of EfPiwiA MID/PIWI domains -piRNA-long-target complex
Release date: July 14, 2021
Resolution: 8.6 Å
EM Method: Single-particle

Anzelon TA, Chowdhury S, Hughes SM, Xiao Y, Lander GC, MacRae IJ

Nature (2021) 597 pp. 285-289 [ Pubmed: 34471284 DOI: doi:10.1038/s41586-021-03856-x ]

EMD-23063
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3D View
Cryo-EM structure of Ephydatia fluviatilis PiwiA-piRNA-target complex
Release date: July 14, 2021
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7kx9
Q-score: 0.461

Anzelon TA, Chowdhury S, Hughes SM, Xiao Y, Lander GC, MacRae IJ

Nature (2021) 597 pp. 285-289 [ Pubmed: 34471284 DOI: doi:10.1038/s41586-021-03856-x ]

Sort by: Download
Showing 1 - 7 of 7. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Complex [7]
  • Protein [6]
  • RNA [6]
  • Ligand [4]

Organism

  • Ephydatia fluviatilis [7]
  • Homo sapiens [4]
  • Synthetic construct [3]

EM Method

  • Single-particle [7]

Resolution

  • ≥ 3Å and < 4Å [6]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [5]

Release Date

  • 2024 [4]
  • 2021 [3]

Author by name

  • Li Z [4]
  • Li ZQ [4]
  • Shen EZ [4]
  • Wu J [4]
  • Wu JP [4]
  • Xu Q [4]
  • Xue J [4]
  • Zhang Y [4]
  • Zhang Z [4]
  • Zhong J [4]
  • Anzelon TA [3]
  • Chowdhury S [3]
  • Hughes SM [3]
  • Lander GC [3]
  • Macrae IJ [3]
  • Xiao Y [3]
  • Gui M [2]
  • Huang J [2]
  • Huang Y [2]
  • Li D [2]
  • Li L [2]
  • Li X [2]
  • Liu HB [2]
  • Lu X [2]
  • Niu H [2]
  • Song CQ [2]
  • Tu S [2]
  • Wan L [2]
  • Xu QK [2]
  • Ying X [2]
  • Yu Q [2]
  • Zeng L [2]
  • Zhang T [2]
  • Zhen Y [2]
  • Zhou L [2]

Author by ORCID

  • Li Z [4]
  • Wu J [4]
  • Zhang Z [4]
  • Shen EZ [4]
  • Chowdhury S [3]
  • Macrae IJ [3]
  • Lander GC [3]
  • Tu S [2]
  • Zeng L [2]
  • Zhen Y [2]
  • Gui M [2]
  • Huang J [2]
  • Yu Q [2]
  • Niu H [2]
  • Song CQ [2]
  • Lu X [2]
  • Zhang Y [2]
  • Zhong J [2]

Journal

  • NATURE [5]
  • NAT STRUCT MOL BIOL [2]

Software

  • CTFFIND [3]
  • RELION [3]

Microscope

  • FEI TITAN KRIOS [4]
  • FEI TALOS ARCTICA [3]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [3]
  • GATAN K3 6K X 4K [2]
  • TFS FALCON 4I 4K X 4K [2]

External links

  • AlphaFold DB [6]
  • Gene Ontology [6]
  • InterPro [6]
  • PDB [6]
  • PDBe-Kb [6]
  • Pfam [6]
  • UniProt [6]
  • ChEBI [4]
  • DrugBank [4]