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natural_source_ncbi_code:"28901"

Filter By

Current Database

  • EMDB [26]

Current status

  • REL [26]

Sample type

  • Complex [21]
  • Protein [18]
  • Cellular component [6]
  • Ligand [5]
  • DNA [2]
  • RNA [2]
  • Sample [2]

Organism

  • Salmonella enterica [26]
  • Escherichia phage phix174 [2]
  • Escherichia phage phiv-1 [2]
  • Synthetic construct [2]
  • Salmonella enterica [1]
  • Escherichia coli [1]
  • Salmonella enterica [1]

EM Method

  • Single-particle [22]
  • Subtomogram averaging [3]
  • Tomography [1]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 8Å and < 12Å [5]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [2]
  • ≥ 30Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [2]
  • 250-500 kDa [5]
  • 500-1000 kDa [1]
  • 1-2 MDa [4]
  • 2-5 MDa [1]

Release Date

  • 2025 [9]
  • 2023 [2]
  • 2022 [2]
  • 2021 [4]
  • 2020 [3]
  • 2019 [1]
  • 2018 [1]
  • 2017 [2]
  • 2016 [1]
  • 2012 [1]

Author by name

  • Beeby M [5]
  • Fernandez SG [4]
  • Gonzalez-rodriguez N [4]
  • Kranzusch PJ [4]
  • Luder M [4]
  • Luders M [4]
  • Schwede F [4]
  • Wassarman DR [4]
  • Yamaguchi S [4]
  • Al-otaibi NS [3]
  • Amin H [3]
  • Bergeron JRC [3]
  • Cohen EJ [3]
  • Costa TRD [3]
  • Drobnic T [3]
  • Edwardson TGW [3]
  • Einenkel R [3]
  • Erhardt M [3]
  • Harrowell J [3]
  • Hilvert D [3]
  • Ilangovan A [3]
  • Mann D [3]
  • Qin K [3]
  • Schmidt J [3]
  • Shmakova E [3]
  • Tetter S [3]
  • Abrusci P [2]
  • Berisa M [2]
  • Burman N [2]
  • Chen M [2]
  • Fane BA [2]
  • Galan JE [2]
  • Gao L [2]
  • Gao LA [2]
  • Johnson S [2]
  • Jovanovic M [2]
  • Klose T [2]
  • Koonin EV [2]
  • Kuhlen L [2]
  • Kulber LM [2]
  • Lampe GD [2]
  • Lara-tejero M [2]
  • Lea SM [2]
  • Lian H [2]
  • Liu J [2]
  • Ma Y [2]
  • Macrae RK [2]
  • Makarova KS [2]
  • Mauney A [2]
  • Pandey S [2]
  • Park D [2]
  • Pollack L [2]
  • Ramirez JL [2]
  • Rossmann MG [2]
  • Roznowski A [2]
  • Roznowski AP [2]
  • Schueder F [2]
  • Sternberg SH [2]
  • Strecker J [2]
  • Sun Y [2]
  • Tang S [2]
  • Tokuda J [2]
  • Tokuda JM [2]
  • Wiedenheft B [2]
  • Wiegand T [2]
  • Wilkinson ME [2]
  • Wilkinson RA [2]
  • Zedaveinyte R [2]
  • Zhang DJ [2]
  • Zhang F [2]
  • Andre I [1]
  • Baker D [1]
  • Bergeron JR [1]
  • Brennan CA [1]
  • Caesar J [1]
  • Calcraft T [1]
  • Deme J [1]
  • Deme JC [1]
  • Dietsche T [1]
  • Erhardt E [1]
  • Galan J [1]
  • Ganief T [1]
  • Gault J [1]
  • Gonen T [1]
  • Grabe GJ [1]
  • Hendrixson DR [1]
  • Holden DW [1]
  • Jensen GJ [1]
  • King NP [1]
  • Lagercrantz S [1]
  • Macek B [1]
  • Matthews-palmer TRS [1]
  • Mebrhatu MT [1]
  • Nans A [1]
  • Ribardo DA [1]
  • Robinson CV [1]
  • Rosenthal PB [1]
  • Rouse SL [1]
  • Ruby EG [1]
  • Sawaya MR [1]

Author by ORCID

  • Gonzalez-rodriguez N [4]
  • Kranzusch PJ [4]
  • Yamaguchi S [4]
  • Wassarman DR [4]
  • Erhardt M [3]
  • Drobnic T [3]
  • Beeby M [3]
  • Edwardson TGW [3]
  • Ilangovan A [3]
  • Al-otaibi NS [3]
  • Bergeron JRC [3]
  • Hilvert D [3]
  • Tetter S [3]
  • Amin H [3]
  • Shmakova E [3]
  • Mann D [3]
  • Costa TRD [3]
  • Harrowell J [3]
  • Tang S [2]
  • Kulber LM [2]
  • Berisa M [2]
  • Sternberg SH [2]
  • Wilkinson RA [2]
  • Strecker J [2]
  • Lea SM [2]
  • Wiedenheft B [2]
  • Wiegand T [2]
  • Zedaveinyte R [2]
  • Lara-tejero M [2]
  • Klose T [2]
  • Lampe GD [2]
  • Gao LA [2]
  • Burman N [2]
  • Galan JE [2]
  • Zhang DJ [2]
  • Pandey S [2]
  • Macrae RK [2]
  • Johnson S [2]
  • Makarova KS [2]
  • Kuhlen L [2]
  • Zhang F [2]
  • Park D [2]
  • Liu J [2]
  • Schueder F [2]
  • Koonin EV [2]
  • Wilkinson ME [2]
  • Yeates TO [1]
  • Gault J [1]
  • Robinson CV [1]
  • Baker D [1]
  • Deme J [1]
  • Deme JC [1]
  • Grabe GJ [1]
  • Macek B [1]
  • King NP [1]
  • Yu XJ [1]
  • Nans A [1]
  • Andre I [1]
  • Calcraft T [1]
  • Rouse SL [1]
  • Dietsche T [1]
  • Matthews-palmer TRS [1]
  • Wagner S [1]

Journal

  • NAT COMMUN [6]
  • NAT MICROBIOL [5]
  • BIORXIV [4]
  • NATURE [4]
  • PNAS [3]
  • SCIENCE [3]
  • NAT STRUCT MOL BIOL [2]
  • J STRUCT BIOL [1]
  • MBIO [1]

Software

  • RELION [10]
  • CRYOSPARC [6]
  • GCTF [3]
  • CTFFIND3 [2]
  • CTFFIND [1]
  • FREALIGN [1]
  • IMOD [1]

Microscope

  • FEI TITAN KRIOS [11]
  • TFS KRIOS [6]
  • FEI TECNAI F20 [5]
  • FEI TALOS ARCTICA [3]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [26]

Film or detector model

  • GATAN K3 6K X 4K [13]
  • GATAN K2 SUMMIT 4K X 4K [5]
  • FEI FALCON II 4K X 4K [4]
  • FEI FALCON IV 4K X 4K [3]
  • FEI FALCON III 4K X 4K [2]
  • TVIPS TEMCAM-F816 8K X 8K [1]

External links

  • PDB [14]
  • UniProt [14]
  • AlphaFold DB [13]
  • Pfam [13]
  • Gene Ontology [10]
  • InterPro [9]
  • PDBe-Kb [8]
  • ChEBI [5]
  • DrugBank [5]
  • ChEMBL [3]
  • EMPIAR [2]
Sort by: Download
Showing 1 - 10 of 26. Page 1 of 3
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EMD-71386
Download Map
3D View
Structure of CloA apo
Release date: July 30, 2025
Resolution: 2.37 Å
EM Method: Single-particle
Fitted PDBs: 9p8s
Q-score: 0.592

Yamaguchi S, Fernandez SG, Wassarman DR, Luders M, Schwede F, Kranzusch PJ

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.09.663793 Pubmed: 40672243 ]

EMD-71388
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3D View
Structure of CloA co-expressed with CloB
Release date: July 30, 2025
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 9p8t
Q-score: 0.58

Yamaguchi S, Fernandez SG, Wassarman DR, Luders M, Schwede F, Kranzusch PJ

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.09.663793 Pubmed: 40672243 ]

EMD-71389
Download Map
3D View
Structure of CloA in complex with dGTP and p3diT
Release date: July 30, 2025
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 9p8u
Q-score: 0.568

Yamaguchi S, Fernandez SG, Wassarman DR, Luders M, Schwede F, Kranzusch PJ

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.09.663793 Pubmed: 40672243 ]

EMD-71390
Download Map
3D View
Structure of CloA in complex with dGTP and dTTP
Release date: July 30, 2025
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9p8v
Q-score: 0.563

Yamaguchi S, Fernandez SG, Wassarman DR, Luders M, Schwede F, Kranzusch PJ

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.09.663793 Pubmed: 40672243 ]

EMD-49523
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3D View
Cryo-EM structure of hexameric SenDRT9 RT-ncRNA complex
Release date: May 14, 2025
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9nlv
Q-score: 0.548

Tang S, Zedaveinyte R, Burman N, Pandey S, Ramirez JL, Kulber LM, Wiegand T, Wilkinson RA, Ma Y, Zhang DJ, Lampe GD, Berisa M, Jovanovic M, Wiedenheft B, Sternberg SH

Nature (2025) 643 pp. 1352-1362 [ DOI: doi:10.1038/s41586-025-09179-5 Pubmed: 40436039 ]

EMD-49525
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3D View
Cryo-EM structure of the trimeric SenDRT9 RT-ncRNA complex GST fusion
Release date: May 14, 2025
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9nlx
Q-score: 0.498

Tang S, Zedaveinyte R, Burman N, Pandey S, Ramirez JL, Kulber LM, Wiegand T, Wilkinson RA, Ma Y, Zhang DJ, Lampe GD, Berisa M, Jovanovic M, Wiedenheft B, Sternberg SH

Nature (2025) 643 pp. 1352-1362 [ DOI: doi:10.1038/s41586-025-09179-5 Pubmed: 40436039 ]

EMD-51486
Download Map
3D View
Salmonella cap-filament complex
Release date: April 9, 2025
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9gnz
Q-score: 0.336

Einenkel R, Qin K, Schmidt J, Al-Otaibi NS, Mann D, Drobnic T, Cohen EJ, Gonzalez-Rodriguez N, Harrowell J, Shmakova E, Beeby M, Erhardt M, Bergeron JRC

Nat Microbiol (2025) 10 pp. 1741-1757 [ Pubmed: 40595287 DOI: doi:10.1038/s41564-025-02037-0 ]

EMD-51493
Download Map
3D View
Salmonella hook-filament junction complex
Release date: April 9, 2025
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9go6
Q-score: 0.349

Einenkel R, Qin K, Schmidt J, Al-Otaibi NS, Mann D, Drobnic T, Cohen EJ, Gonzalez-Rodriguez N, Harrowell J, Shmakova E, Beeby M, Erhardt M, Bergeron JRC

Nat Microbiol (2025) 10 pp. 1741-1757 [ Pubmed: 40595287 DOI: doi:10.1038/s41564-025-02037-0 ]

EMD-51555
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Sub-tomogram average of Salmonella flagellar tip
Release date: April 9, 2025
EM Method: Tomography

Einenkel R, Qin K, Schmidt J, Al-Otaibi NS, Mann D, Drobnic T, Cohen EJ, Gonzalez-Rodriguez N, Harrowell J, Shmakova E, Beeby M, Erhardt M, Bergeron JRC

Nat Microbiol (2025) 10 pp. 1741-1757 [ Pubmed: 40595287 DOI: doi:10.1038/s41564-025-02037-0 ]

EMD-41046
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3D View
Raw data
EMPIAR-11577
Subtomogram average structure of the injectisome
Release date: July 26, 2023
Resolution: 25.0 Å
EM Method: Subtomogram averaging

Lian H, Park D, Chen M, Schueder F, Lara-Tejero M, Liu J, Galan JE

Nat Microbiol (2023) 8 pp. 1880-1895 [ DOI: doi:10.1038/s41564-023-01459-y Pubmed: 37640963 ]

Sort by: Download
Showing 1 - 10 of 26. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [26]

Current status

  • REL [26]

Sample type

  • Complex [21]
  • Protein [18]
  • Cellular component [6]
  • Ligand [5]
  • DNA [2]
  • RNA [2]
  • Sample [2]

Organism

  • Salmonella enterica [26]
  • Escherichia phage phix174 [2]
  • Escherichia phage phiv-1 [2]
  • Synthetic construct [2]
  • Salmonella enterica [1]
  • Escherichia coli [1]
  • Salmonella enterica [1]

EM Method

  • Single-particle [22]
  • Subtomogram averaging [3]
  • Tomography [1]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 8Å and < 12Å [5]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [2]
  • ≥ 30Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [2]
  • 250-500 kDa [5]
  • 500-1000 kDa [1]
  • 1-2 MDa [4]
  • 2-5 MDa [1]

Release Date

  • 2025 [9]
  • 2023 [2]
  • 2022 [2]
  • 2021 [4]
  • 2020 [3]
  • 2019 [1]
  • 2018 [1]
  • 2017 [2]
  • 2016 [1]
  • 2012 [1]

Author by name

  • Beeby M [5]
  • Fernandez SG [4]
  • Gonzalez-rodriguez N [4]
  • Kranzusch PJ [4]
  • Luder M [4]
  • Luders M [4]
  • Schwede F [4]
  • Wassarman DR [4]
  • Yamaguchi S [4]
  • Al-otaibi NS [3]
  • Amin H [3]
  • Bergeron JRC [3]
  • Cohen EJ [3]
  • Costa TRD [3]
  • Drobnic T [3]
  • Edwardson TGW [3]
  • Einenkel R [3]
  • Erhardt M [3]
  • Harrowell J [3]
  • Hilvert D [3]
  • Ilangovan A [3]
  • Mann D [3]
  • Qin K [3]
  • Schmidt J [3]
  • Shmakova E [3]
  • Tetter S [3]
  • Abrusci P [2]
  • Berisa M [2]
  • Burman N [2]
  • Chen M [2]
  • Fane BA [2]
  • Galan JE [2]
  • Gao L [2]
  • Gao LA [2]
  • Johnson S [2]
  • Jovanovic M [2]
  • Klose T [2]
  • Koonin EV [2]
  • Kuhlen L [2]
  • Kulber LM [2]
  • Lampe GD [2]
  • Lara-tejero M [2]
  • Lea SM [2]
  • Lian H [2]
  • Liu J [2]
  • Ma Y [2]
  • Macrae RK [2]
  • Makarova KS [2]
  • Mauney A [2]
  • Pandey S [2]
  • Park D [2]
  • Pollack L [2]
  • Ramirez JL [2]
  • Rossmann MG [2]
  • Roznowski A [2]
  • Roznowski AP [2]
  • Schueder F [2]
  • Sternberg SH [2]
  • Strecker J [2]
  • Sun Y [2]
  • Tang S [2]
  • Tokuda J [2]
  • Tokuda JM [2]
  • Wiedenheft B [2]
  • Wiegand T [2]
  • Wilkinson ME [2]
  • Wilkinson RA [2]
  • Zedaveinyte R [2]
  • Zhang DJ [2]
  • Zhang F [2]
  • Andre I [1]
  • Baker D [1]
  • Bergeron JR [1]
  • Brennan CA [1]
  • Caesar J [1]
  • Calcraft T [1]
  • Deme J [1]
  • Deme JC [1]
  • Dietsche T [1]
  • Erhardt E [1]
  • Galan J [1]
  • Ganief T [1]
  • Gault J [1]
  • Gonen T [1]
  • Grabe GJ [1]
  • Hendrixson DR [1]
  • Holden DW [1]
  • Jensen GJ [1]
  • King NP [1]
  • Lagercrantz S [1]
  • Macek B [1]
  • Matthews-palmer TRS [1]
  • Mebrhatu MT [1]
  • Nans A [1]
  • Ribardo DA [1]
  • Robinson CV [1]
  • Rosenthal PB [1]
  • Rouse SL [1]
  • Ruby EG [1]
  • Sawaya MR [1]

Author by ORCID

  • Gonzalez-rodriguez N [4]
  • Kranzusch PJ [4]
  • Yamaguchi S [4]
  • Wassarman DR [4]
  • Erhardt M [3]
  • Drobnic T [3]
  • Beeby M [3]
  • Edwardson TGW [3]
  • Ilangovan A [3]
  • Al-otaibi NS [3]
  • Bergeron JRC [3]
  • Hilvert D [3]
  • Tetter S [3]
  • Amin H [3]
  • Shmakova E [3]
  • Mann D [3]
  • Costa TRD [3]
  • Harrowell J [3]
  • Tang S [2]
  • Kulber LM [2]
  • Berisa M [2]
  • Sternberg SH [2]
  • Wilkinson RA [2]
  • Strecker J [2]
  • Lea SM [2]
  • Wiedenheft B [2]
  • Wiegand T [2]
  • Zedaveinyte R [2]
  • Lara-tejero M [2]
  • Klose T [2]
  • Lampe GD [2]
  • Gao LA [2]
  • Burman N [2]
  • Galan JE [2]
  • Zhang DJ [2]
  • Pandey S [2]
  • Macrae RK [2]
  • Johnson S [2]
  • Makarova KS [2]
  • Kuhlen L [2]
  • Zhang F [2]
  • Park D [2]
  • Liu J [2]
  • Schueder F [2]
  • Koonin EV [2]
  • Wilkinson ME [2]
  • Yeates TO [1]
  • Gault J [1]
  • Robinson CV [1]
  • Baker D [1]
  • Deme J [1]
  • Deme JC [1]
  • Grabe GJ [1]
  • Macek B [1]
  • King NP [1]
  • Yu XJ [1]
  • Nans A [1]
  • Andre I [1]
  • Calcraft T [1]
  • Rouse SL [1]
  • Dietsche T [1]
  • Matthews-palmer TRS [1]
  • Wagner S [1]

Journal

  • NAT COMMUN [6]
  • NAT MICROBIOL [5]
  • BIORXIV [4]
  • NATURE [4]
  • PNAS [3]
  • SCIENCE [3]
  • NAT STRUCT MOL BIOL [2]
  • J STRUCT BIOL [1]
  • MBIO [1]

Software

  • RELION [10]
  • CRYOSPARC [6]
  • GCTF [3]
  • CTFFIND3 [2]
  • CTFFIND [1]
  • FREALIGN [1]
  • IMOD [1]

Microscope

  • FEI TITAN KRIOS [11]
  • TFS KRIOS [6]
  • FEI TECNAI F20 [5]
  • FEI TALOS ARCTICA [3]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [26]

Film or detector model

  • GATAN K3 6K X 4K [13]
  • GATAN K2 SUMMIT 4K X 4K [5]
  • FEI FALCON II 4K X 4K [4]
  • FEI FALCON IV 4K X 4K [3]
  • FEI FALCON III 4K X 4K [2]
  • TVIPS TEMCAM-F816 8K X 8K [1]

External links

  • PDB [14]
  • UniProt [14]
  • AlphaFold DB [13]
  • Pfam [13]
  • Gene Ontology [10]
  • InterPro [9]
  • PDBe-Kb [8]
  • ChEBI [5]
  • DrugBank [5]
  • ChEMBL [3]
  • EMPIAR [2]