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natural_source_ncbi_code:"2695836"

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Current Database

  • EMDB [20]

Current status

  • REL [20]

Sample type

  • Protein [18]
  • Virus [18]
  • Complex [2]
  • Ligand [2]

Organism

  • Escherichia virus t5 [20]
  • Escherichia coli [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [19]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [10]
  • ≥ 4Å and < 5Å [8]
  • ≥ 5Å and < 6Å [1]

Model molecular weight

  • 100-250 kDa [6]
  • 250-500 kDa [2]
  • 500-1000 kDa [7]
  • 1-2 MDa [3]

Release Date

  • 2024 [8]
  • 2023 [10]
  • 2022 [2]

Author by name

  • Breyton C [11]
  • Linares R [11]
  • Schoehn G [11]
  • Effantin G [10]
  • Boeri Erba E [9]
  • Darnault C [9]
  • Epalle N [9]
  • Arnaud CA [7]
  • Chen W [7]
  • Epalle NH [7]
  • Liu H [7]
  • Liu HR [7]
  • Peng Y [7]
  • Song J [7]
  • Tang H [7]
  • Xiao H [7]
  • Zheng J [7]
  • Peng YN [6]
  • Basle A [1]
  • Benihoud K [1]
  • Boulanger P [1]
  • Brandner AF [1]
  • Degroux S [1]
  • Ducrot N [1]
  • England P [1]
  • Hoos S [1]
  • Khalid S [1]
  • Larbi Cherif L [1]
  • Mader SL [1]
  • Ouldali M [1]
  • Ramirez-chamorro L [1]
  • Renouard M [1]
  • Rossier O [1]
  • Sidibe N [1]
  • Silale A [1]
  • Vanbergue C [1]
  • Vernhes E [1]
  • Zig L [1]
  • Van Den Berg B [1]

Author by ORCID

  • Breyton C [11]
  • Linares R [10]
  • Schoehn G [9]
  • Peng Y [7]
  • Darnault C [7]
  • Boeri Erba E [7]
  • Effantin G [7]
  • Xiao H [7]
  • Zheng J [7]
  • England P [1]
  • Mader SL [1]
  • Khalid S [1]
  • Hoos S [1]
  • Basle A [1]
  • Brandner AF [1]
  • Vernhes E [1]
  • Benihoud K [1]
  • Van Den Berg B [1]
  • Silale A [1]
  • Boulanger P [1]
  • Rossier O [1]
  • Ducrot N [1]

Journal

  • INT J MOL SCI [7]
  • SCI ADV [7]
  • J VIROL [4]
  • NPJ VACCINES [1]
  • PNAS [1]

Software

  • RELION [11]
  • CRYOSPARC [1]

Microscope

  • FEI TITAN KRIOS [19]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [20]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]
  • GATAN K3 6K X 4K [8]
  • FEI FALCON IV 4K X 4K [1]

External links

  • Gene Ontology [18]
  • PDB [18]
  • PDBe-Kb [18]
  • UniProt [18]
  • InterPro [16]
  • Pfam [13]
  • EMPIAR [7]
  • AlphaFold DB [2]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
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Showing 1 - 10 of 20. Page 1 of 2
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EMD-60689
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3D View
Structure of urea-treated empty bacteriophage T5 connector complex
Release date: Oct. 2, 2024
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 9imh
Q-score: 0.397

Peng Y, Tang H, Xiao H, Chen W, Song J, Zheng J, Liu H

Int J Mol Sci (2024) 25 [ DOI: doi:10.3390/ijms25158479 Pubmed: 39126049 ]

EMD-60695
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3D View
Structure of the urea-treated empty bacteriophage T5 portal complex
Release date: Oct. 2, 2024
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 9imv
Q-score: 0.477

Peng Y, Tang H, Xiao H, Chen W, Song J, Zheng J, Liu H

Int J Mol Sci (2024) 25 [ DOI: doi:10.3390/ijms25158479 Pubmed: 39126049 ]

EMD-60672
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3D View
Structure of the bacteriophage T5 portal complex
Release date: Sept. 18, 2024
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9ilp
Q-score: 0.52

Peng Y, Tang H, Xiao H, Chen W, Song J, Zheng J, Liu H

Int J Mol Sci (2024) 25 [ DOI: doi:10.3390/ijms25158479 Pubmed: 39126049 ]

EMD-60511
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3D View
Structure of the bacteriophage T5 capsid
Release date: Sept. 4, 2024
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8zvi

Peng Y, Tang H, Xiao H, Chen W, Song J, Zheng J, Liu H

Int J Mol Sci (2024) 25 [ DOI: doi:10.3390/ijms25158479 Pubmed: 39126049 ]

EMD-60675
Download Map
3D View
Structure of the bacteriophage T5 connector complex
Release date: Sept. 4, 2024
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 9ilv

Peng Y, Tang H, Xiao H, Chen W, Song J, Zheng J, Liu H

Int J Mol Sci (2024) 25 [ DOI: doi:10.3390/ijms25158479 Pubmed: 39126049 ]

EMD-60712
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3D View
Structure of bacteriophage T5 tail tube
Release date: Sept. 4, 2024
Resolution: 3.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 9iny

Peng Y, Tang H, Xiao H, Chen W, Song J, Zheng J, Liu H

Int J Mol Sci (2024) 25 [ DOI: doi:10.3390/ijms25158479 Pubmed: 39126049 ]

EMD-60750
Download Map
3D View
Structure of the bacteriophage T5 tail tip complex
Release date: Sept. 4, 2024
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 9ioz

Peng Y, Tang H, Xiao H, Chen W, Song J, Zheng J, Liu H

Int J Mol Sci (2024) 25 [ DOI: doi:10.3390/ijms25158479 Pubmed: 39126049 ]

EMD-51232
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3D View
Unsymmetrized map of T5 phage tail tip complex, showing the monomeric Tail Completion Protein p143
Release date: Aug. 14, 2024
Resolution: 4.0 Å
EM Method: Single-particle

Linares R, Breyton C

J Virol (2025) 99 pp. e0137624-e0137624 [ DOI: doi:10.1128/jvi.01376-24 Pubmed: 39714170 ]

EMD-14863
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3D View
Bacteriophage T5 head - pb10-N-Ter fused to OVA
Release date: Nov. 8, 2023
Resolution: 5.8 Å
EM Method: Single-particle

Vernhes E, Larbi Cherif L, Ducrot N, Vanbergue C, Ouldali M, Zig L, Sidibe N, Hoos S, Ramirez-Chamorro L, Renouard M, Rossier O, England P, Schoehn G, Boulanger P, Benihoud K

NPJ Vaccines (2024) 9 pp. 6-6 [ DOI: doi:10.1038/s41541-023-00798-5 Pubmed: 38177231 ]

EMD-15967
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3D View
Cryo-EM structure of the proximal end of bacteriophage T5 tail : p142 tail terminator protein hexamer and pb6 tail tube protein trimer
Release date: Nov. 1, 2023
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 8bcp
Q-score: 0.304

Linares R, Breyton C

J Virol (2024) pp. e0137624-e0137624 [ DOI: doi:10.1128/jvi.01376-24 Pubmed: 39714170 ]

Sort by: Download
Showing 1 - 10 of 20. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [20]

Current status

  • REL [20]

Sample type

  • Protein [18]
  • Virus [18]
  • Complex [2]
  • Ligand [2]

Organism

  • Escherichia virus t5 [20]
  • Escherichia coli [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [19]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [10]
  • ≥ 4Å and < 5Å [8]
  • ≥ 5Å and < 6Å [1]

Model molecular weight

  • 100-250 kDa [6]
  • 250-500 kDa [2]
  • 500-1000 kDa [7]
  • 1-2 MDa [3]

Release Date

  • 2024 [8]
  • 2023 [10]
  • 2022 [2]

Author by name

  • Breyton C [11]
  • Linares R [11]
  • Schoehn G [11]
  • Effantin G [10]
  • Boeri Erba E [9]
  • Darnault C [9]
  • Epalle N [9]
  • Arnaud CA [7]
  • Chen W [7]
  • Epalle NH [7]
  • Liu H [7]
  • Liu HR [7]
  • Peng Y [7]
  • Song J [7]
  • Tang H [7]
  • Xiao H [7]
  • Zheng J [7]
  • Peng YN [6]
  • Basle A [1]
  • Benihoud K [1]
  • Boulanger P [1]
  • Brandner AF [1]
  • Degroux S [1]
  • Ducrot N [1]
  • England P [1]
  • Hoos S [1]
  • Khalid S [1]
  • Larbi Cherif L [1]
  • Mader SL [1]
  • Ouldali M [1]
  • Ramirez-chamorro L [1]
  • Renouard M [1]
  • Rossier O [1]
  • Sidibe N [1]
  • Silale A [1]
  • Vanbergue C [1]
  • Vernhes E [1]
  • Zig L [1]
  • Van Den Berg B [1]

Author by ORCID

  • Breyton C [11]
  • Linares R [10]
  • Schoehn G [9]
  • Peng Y [7]
  • Darnault C [7]
  • Boeri Erba E [7]
  • Effantin G [7]
  • Xiao H [7]
  • Zheng J [7]
  • England P [1]
  • Mader SL [1]
  • Khalid S [1]
  • Hoos S [1]
  • Basle A [1]
  • Brandner AF [1]
  • Vernhes E [1]
  • Benihoud K [1]
  • Van Den Berg B [1]
  • Silale A [1]
  • Boulanger P [1]
  • Rossier O [1]
  • Ducrot N [1]

Journal

  • INT J MOL SCI [7]
  • SCI ADV [7]
  • J VIROL [4]
  • NPJ VACCINES [1]
  • PNAS [1]

Software

  • RELION [11]
  • CRYOSPARC [1]

Microscope

  • FEI TITAN KRIOS [19]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [20]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]
  • GATAN K3 6K X 4K [8]
  • FEI FALCON IV 4K X 4K [1]

External links

  • Gene Ontology [18]
  • PDB [18]
  • PDBe-Kb [18]
  • UniProt [18]
  • InterPro [16]
  • Pfam [13]
  • EMPIAR [7]
  • AlphaFold DB [2]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]