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natural_source_ncbi_code:"262968"

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Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Virus [8]
  • Protein [2]

Organism

  • Singapore grouper iridovirus [8]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 3Å and < 4Å [6]
  • ≥ 8Å and < 12Å [2]

Model molecular weight

  • 100-250 kDa [1]
  • 5-10 MDa [1]

Release Date

  • 2023 [7]
  • 2019 [1]

Author by name

  • Gao GF [7]
  • Gao S [7]
  • Huang X [7]
  • Huang Y [7]
  • Liu C [7]
  • Liu CC [7]
  • Liu S [7]
  • Peng R [7]
  • Qi J [7]
  • Qi JX [7]
  • Qin Q [7]
  • Wang P [7]
  • Wong CCL [7]
  • Zhang X [7]
  • Zhang XZ [7]
  • Zhang Y [7]
  • Zhao Z [7]
  • Zhao ZN [7]
  • Zhu D [7]
  • Zhu DJ [7]
  • Chen D-H [1]
  • Chen DH [1]
  • Chiu W [1]
  • Hew CL [1]
  • Jakana J [1]
  • Pintilie G [1]
  • Tran BN [1]
  • Wu J [1]

Author by ORCID

  • Wong CCL [7]
  • Wang P [7]
  • Zhang X [7]
  • Qin Q [7]
  • Peng R [7]
  • Gao GF [7]
  • Zhu D [7]
  • Liu C [7]
  • Qi J [7]
  • Pintilie G [1]
  • Chiu W [1]
  • Wu J [1]

Journal

  • NAT COMMUN [7]
  • STRUCTURE [1]

Software

  • EMAN [1]
  • MPSA [1]

Microscope

  • FEI TITAN KRIOS [8]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • FEI FALCON III 4K X 4K [7]
  • GATAN ULTRASCAN 4000 4K X 4K [1]

External links

  • Gene Ontology [2]
  • InterPro [2]
  • PDB [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]
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EMD-34227
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3D View
Cryo-EM structure of Singapore Grouper Iridovirus capsid block 1
Release date: April 19, 2023
Resolution: 3.42 Å
EM Method: Single-particle

Zhao Z, Huang Y, Liu C, Zhu D, Gao S, Liu S, Peng R, Zhang Y, Huang X, Qi J, Wong CCL, Zhang X, Wang P, Qin Q, Gao GF

Nat Commun (2023) 14 pp. 2050-2050 [ Pubmed: 37041173 DOI: doi:10.1038/s41467-023-37681-9 ]

EMD-34229
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Cryo-EM structure of Singapore Grouper Iridovirus capsid block 4
Release date: April 19, 2023
Resolution: 3.51 Å
EM Method: Single-particle

Zhao Z, Huang Y, Liu C, Zhu D, Gao S, Liu S, Peng R, Zhang Y, Huang X, Qi J, Wong CCL, Zhang X, Wang P, Qin Q, Gao GF

Nat Commun (2023) 14 pp. 2050-2050 [ Pubmed: 37041173 DOI: doi:10.1038/s41467-023-37681-9 ]

EMD-34230
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Cryo-EM structure of Singapore Grouper Iridovirus capsid block 2
Release date: April 19, 2023
Resolution: 3.4 Å
EM Method: Single-particle

Zhao Z, Huang Y, Liu C, Zhu D, Gao S, Liu S, Peng R, Zhang Y, Huang X, Qi J, Wong CCL, Zhang X, Wang P, Qin Q, Gao GF

Nat Commun (2023) 14 pp. 2050-2050 [ Pubmed: 37041173 DOI: doi:10.1038/s41467-023-37681-9 ]

EMD-34235
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Cryo-EM structure of Singapore Grouper Iridovirus capsid block 3
Release date: April 19, 2023
Resolution: 3.42 Å
EM Method: Single-particle

Zhao Z, Huang Y, Liu C, Zhu D, Gao S, Liu S, Peng R, Zhang Y, Huang X, Qi J, Wong CCL, Zhang X, Wang P, Qin Q, Gao GF

Nat Commun (2023) 14 pp. 2050-2050 [ Pubmed: 37041173 DOI: doi:10.1038/s41467-023-37681-9 ]

EMD-34236
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Cryo-EM structure of Singapore Grouper Iridovirus capsid block 5
Release date: April 19, 2023
Resolution: 3.51 Å
EM Method: Single-particle

Zhao Z, Huang Y, Liu C, Zhu D, Gao S, Liu S, Peng R, Zhang Y, Huang X, Qi J, Wong CCL, Zhang X, Wang P, Qin Q, Gao GF

Nat Commun (2023) 14 pp. 2050-2050 [ Pubmed: 37041173 DOI: doi:10.1038/s41467-023-37681-9 ]

EMD-34251
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Singapore Grouper Iridovirus
Release date: April 19, 2023
Resolution: 9.0 Å
EM Method: Single-particle

Zhao Z, Huang Y, Liu C, Zhu D, Gao S, Liu S, Peng R, Zhang Y, Huang X, Qi J, Wong CCL, Zhang X, Wang P, Qin Q, Gao GF

Nat Commun (2023) 14 pp. 2050-2050 [ Pubmed: 37041173 DOI: doi:10.1038/s41467-023-37681-9 ]

EMD-34815
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One asymmetric unit of Singapore grouper iridovirus capsid
Release date: April 19, 2023
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8hif
Q-score: 0.491

Zhao Z, Huang Y, Liu C, Zhu D, Gao S, Liu S, Peng R, Zhang Y, Huang X, Qi J, Wong CCL, Zhang X, Wang P, Qin Q, Gao GF

Nat Commun (2023) 14 pp. 2050-2050 [ Pubmed: 37041173 DOI: doi:10.1038/s41467-023-37681-9 ]

EMD-20091
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Singapore Grouper Iridovirus SGIV at 8.6 Angstrom Resolution
Release date: June 12, 2019
Resolution: 8.6 Å
EM Method: Single-particle
Fitted PDBs: 6ojn
Q-score: 0.08

Pintilie G, Chen DH, Tran BN, Jakana J, Wu J, Hew CL, Chiu W

Structure (2019) 27 pp. 1561- [ Pubmed: 31447288 DOI: doi:10.1016/j.str.2019.08.002 ]

Sort by: Download
Showing 1 - 8 of 8. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Virus [8]
  • Protein [2]

Organism

  • Singapore grouper iridovirus [8]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 3Å and < 4Å [6]
  • ≥ 8Å and < 12Å [2]

Model molecular weight

  • 100-250 kDa [1]
  • 5-10 MDa [1]

Release Date

  • 2023 [7]
  • 2019 [1]

Author by name

  • Gao GF [7]
  • Gao S [7]
  • Huang X [7]
  • Huang Y [7]
  • Liu C [7]
  • Liu CC [7]
  • Liu S [7]
  • Peng R [7]
  • Qi J [7]
  • Qi JX [7]
  • Qin Q [7]
  • Wang P [7]
  • Wong CCL [7]
  • Zhang X [7]
  • Zhang XZ [7]
  • Zhang Y [7]
  • Zhao Z [7]
  • Zhao ZN [7]
  • Zhu D [7]
  • Zhu DJ [7]
  • Chen D-H [1]
  • Chen DH [1]
  • Chiu W [1]
  • Hew CL [1]
  • Jakana J [1]
  • Pintilie G [1]
  • Tran BN [1]
  • Wu J [1]

Author by ORCID

  • Wong CCL [7]
  • Wang P [7]
  • Zhang X [7]
  • Qin Q [7]
  • Peng R [7]
  • Gao GF [7]
  • Zhu D [7]
  • Liu C [7]
  • Qi J [7]
  • Pintilie G [1]
  • Chiu W [1]
  • Wu J [1]

Journal

  • NAT COMMUN [7]
  • STRUCTURE [1]

Software

  • EMAN [1]
  • MPSA [1]

Microscope

  • FEI TITAN KRIOS [8]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • FEI FALCON III 4K X 4K [7]
  • GATAN ULTRASCAN 4000 4K X 4K [1]

External links

  • Gene Ontology [2]
  • InterPro [2]
  • PDB [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]