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natural_source_ncbi_code:"243273"

Filter By

Current Database

  • EMDB [13]

Current status

  • REL [13]

Sample type

  • Complex [10]
  • Protein [6]
  • Cell [3]
  • Ligand [1]

Organism

  • Mycoplasma genitalium [13]

EM Method

  • Single-particle [8]
  • Subtomogram averaging [5]

Resolution

  • ≥ 3Å and < 4Å [2]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [3]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [3]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [4]
  • 500-1000 kDa [1]

Release Date

  • 2023 [8]
  • 2020 [3]
  • 2017 [2]

Author by name

  • Frangakis AS [13]
  • Scheffer MP [13]
  • Sprankel L [11]
  • Ermel UH [8]
  • Manger S [8]
  • Fita I [5]
  • Gonzalez-gonzalez L [5]
  • Pinol J [5]
  • Querol E [5]
  • Ratera M [5]
  • Seybert A [5]
  • Aparicio D [3]
  • Marcos-silva M [3]
  • Pich OQ [3]
  • Reitz J [3]
  • Torres-puig S [3]
  • Vizarraga D [3]
  • Weber MS [3]
  • Frangakis AF [2]
  • Kunz M [2]
  • Martin-benito J [2]
  • Valpuesta JM [2]

Author by ORCID

  • Frangakis AS [13]
  • Manger S [8]
  • Ratera M [5]
  • Scheffer MP [5]
  • Pinol J [5]
  • Reitz J [3]
  • Marcos-silva M [3]
  • Aparicio D [3]
  • Vizarraga D [3]
  • Gonzalez-gonzalez L [3]
  • Torres-puig S [3]
  • Weber MS [3]
  • Pich OQ [3]
  • Valpuesta JM [2]
  • Martin-benito J [2]

Journal

  • PLOS PATHOG [8]
  • NAT COMMUN [3]
  • MOL MICROBIOL [2]

Software

  • CRYOSPARC [4]
  • RELION [3]
  • SUPER-SAMPLING SART [2]
  • MATLAB [1]

Microscope

  • FEI TITAN KRIOS [12]
  • FEI TECNAI F20 [1]

Electron Source

  • FIELD EMISSION GUN [13]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]
  • FEI EAGLE 4K X 4K [1]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • AlphaFold DB [6]
  • InterPro [6]
  • PDB [6]
  • PDBe-Kb [6]
  • Pfam [6]
  • UniProt [6]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
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Showing 1 - 10 of 13. Page 1 of 2
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EMD-17587
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3D View
Single particle cryo-EM of the P140-P110 heterodimer of Mycoplasma genitalium at 3.3 Angstrom resolution.
Release date: Nov. 1, 2023
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8pbx
Q-score: 0.467

Sprankel L, Scheffer MP, Manger S, Ermel UH, Frangakis AS

PLoS Pathog (2023) 19 pp. e1011761-e1011761 [ Pubmed: 37939157 DOI: doi:10.1371/journal.ppat.1011761 ]

EMD-17588
Download Map
3D View
Single particle cryo-EM of the P140-P110 heterodimer with an alternative conformation in the P140 stalk of Mycoplasma genitalium at a resolution of 3.7 Angstrom.
Release date: Nov. 1, 2023
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8pby
Q-score: 0.32

Sprankel L, Scheffer MP, Manger S, Ermel UH, Frangakis AS

PLoS Pathog (2023) 19 pp. e1011761-e1011761 [ Pubmed: 37939157 DOI: doi:10.1371/journal.ppat.1011761 ]

EMD-17589
Download Map
3D View
Single particle cryo-EM of the Nap complex of Mycoplasma genitalium in the expanded conformation at 7.3 Angstrom resolution.
Release date: Nov. 1, 2023
Resolution: 7.3 Å
EM Method: Single-particle

Sprankel L, Scheffer MP, Manger S, Ermel UH, Frangakis AS

PLoS Pathog (2023) 19 pp. e1011761-e1011761 [ Pubmed: 37939157 DOI: doi:10.1371/journal.ppat.1011761 ]

EMD-17590
Download Map
3D View
Single particle cryo-EM of the Nap adhesion complex of Mycoplasma genitalium in the canonical conformation at 8.3 Angstrom resolution.
Release date: Nov. 1, 2023
Resolution: 8.3 Å
EM Method: Single-particle

Sprankel L, Scheffer MP, Manger S, Ermel UH, Frangakis AS

PLoS Pathog (2023) 19 pp. e1011761-e1011761 [ Pubmed: 37939157 DOI: doi:10.1371/journal.ppat.1011761 ]

EMD-17591
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3D View
Sub-tomogram average of the Nap adhesion complex from the human pathogen Mycoplasma genitalium at 11 Angstrom.
Release date: Nov. 1, 2023
Resolution: 11.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8pbz
Q-score: 0.044

Sprankel L, Scheffer MP, Manger S, Ermel UH, Frangakis AS

PLoS Pathog (2023) 19 pp. e1011761-e1011761 [ Pubmed: 37939157 DOI: doi:10.1371/journal.ppat.1011761 ]

EMD-17592
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3D View
Sub-tomogram average of the open conformation of the Nap adhesion complex from the human pathogen Mycoplasma genitalium.
Release date: Nov. 1, 2023
Resolution: 17.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8pc0
Q-score: 0.053

Sprankel L, Scheffer MP, Manger S, Ermel UH, Frangakis AS

PLoS Pathog (2023) 19 pp. e1011761-e1011761 [ Pubmed: 37939157 DOI: doi:10.1371/journal.ppat.1011761 ]

EMD-17593
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3D View
Sub-tomogram average of the closed conformation of the Nap adhesion complex from the human pathogen Mycoplasma genitalium.
Release date: Nov. 1, 2023
Resolution: 18.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8pc1
Q-score: 0.041

Sprankel L, Scheffer MP, Manger S, Ermel UH, Frangakis AS

PLoS Pathog (2023) 19 pp. e1011761-e1011761 [ Pubmed: 37939157 DOI: doi:10.1371/journal.ppat.1011761 ]

EMD-18414
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3D View
Single particle cryo-EM of the Nap adhesion complex of Mycoplasma genitalium soaked with 6 -SL at 7.7 Angstrom resolution.
Release date: Nov. 1, 2023
Resolution: 7.7 Å
EM Method: Single-particle

Sprankel L, Scheffer MP, Manger S, Ermel UH, Frangakis AS

PLoS Pathog (2023) 19 pp. e1011761-e1011761 [ Pubmed: 37939157 DOI: doi:10.1371/journal.ppat.1011761 ]

EMD-10259
Download Map
3D View
Sub-tomogram average of the Nap adhesion complex from the human pathogen Mycoplasma genitalium.
Release date: June 24, 2020
Resolution: 15.0 Å
EM Method: Subtomogram averaging

Aparicio D, Scheffer MP, Marcos-Silva M, Vizarraga D, Sprankel L, Ratera M, Weber MS, Seybert A, Torres-Puig S, Gonzalez-Gonzalez L, Reitz J, Querol E, Pinol J, Pich OQ, Fita I, Frangakis AS

Nat Commun (2020) 11 pp. 2877-2877 [ Pubmed: 32513917 DOI: doi:10.1038/s41467-020-16511-2 ]

EMD-10260
Download Map
3D View
Structure the Nap adhesion complex from the human pathogen Mycoplasma genitalium by single particle cryo-EM.
Release date: June 24, 2020
Resolution: 10.0 Å
EM Method: Single-particle

Aparicio D, Scheffer MP, Marcos-Silva M, Vizarraga D, Sprankel L, Ratera M, Weber MS, Seybert A, Torres-Puig S, Gonzalez-Gonzalez L, Reitz J, Querol E, Pinol J, Pich OQ, Fita I, Frangakis AS

Nat Commun (2020) 11 pp. 2877-2877 [ Pubmed: 32513917 DOI: doi:10.1038/s41467-020-16511-2 ]

Sort by: Download
Showing 1 - 10 of 13. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [13]

Current status

  • REL [13]

Sample type

  • Complex [10]
  • Protein [6]
  • Cell [3]
  • Ligand [1]

Organism

  • Mycoplasma genitalium [13]

EM Method

  • Single-particle [8]
  • Subtomogram averaging [5]

Resolution

  • ≥ 3Å and < 4Å [2]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [3]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [3]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [4]
  • 500-1000 kDa [1]

Release Date

  • 2023 [8]
  • 2020 [3]
  • 2017 [2]

Author by name

  • Frangakis AS [13]
  • Scheffer MP [13]
  • Sprankel L [11]
  • Ermel UH [8]
  • Manger S [8]
  • Fita I [5]
  • Gonzalez-gonzalez L [5]
  • Pinol J [5]
  • Querol E [5]
  • Ratera M [5]
  • Seybert A [5]
  • Aparicio D [3]
  • Marcos-silva M [3]
  • Pich OQ [3]
  • Reitz J [3]
  • Torres-puig S [3]
  • Vizarraga D [3]
  • Weber MS [3]
  • Frangakis AF [2]
  • Kunz M [2]
  • Martin-benito J [2]
  • Valpuesta JM [2]

Author by ORCID

  • Frangakis AS [13]
  • Manger S [8]
  • Ratera M [5]
  • Scheffer MP [5]
  • Pinol J [5]
  • Reitz J [3]
  • Marcos-silva M [3]
  • Aparicio D [3]
  • Vizarraga D [3]
  • Gonzalez-gonzalez L [3]
  • Torres-puig S [3]
  • Weber MS [3]
  • Pich OQ [3]
  • Valpuesta JM [2]
  • Martin-benito J [2]

Journal

  • PLOS PATHOG [8]
  • NAT COMMUN [3]
  • MOL MICROBIOL [2]

Software

  • CRYOSPARC [4]
  • RELION [3]
  • SUPER-SAMPLING SART [2]
  • MATLAB [1]

Microscope

  • FEI TITAN KRIOS [12]
  • FEI TECNAI F20 [1]

Electron Source

  • FIELD EMISSION GUN [13]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]
  • FEI EAGLE 4K X 4K [1]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • AlphaFold DB [6]
  • InterPro [6]
  • PDB [6]
  • PDBe-Kb [6]
  • Pfam [6]
  • UniProt [6]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]