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natural_source_ncbi_code:"2303"

Filter By

Current Database

  • EMDB [67]

Current status

  • REL [67]

Sample type

  • Complex [48]
  • Protein [34]
  • Sample [19]
  • Ligand [3]

Organism

  • Thermoplasma acidophilum [67]
  • Trypanosoma brucei [3]
  • Thermoplasma acidophilum [2]
  • Synthetic construct [1]

EM Method

  • Single-particle [63]
  • Subtomogram averaging [3]
  • Tomography [1]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [27]
  • ≥ 3Å and < 4Å [18]
  • ≥ 4Å and < 5Å [8]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [6]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 30Å [2]

Model molecular weight

  • 50-100 kDa [1]
  • 250-500 kDa [4]
  • 500-1000 kDa [14]

Release Date

  • 2024 [9]
  • 2023 [5]
  • 2022 [4]
  • 2021 [10]
  • 2020 [8]
  • 2018 [5]
  • 2017 [4]
  • 2016 [7]
  • 2015 [8]
  • 2014 [3]
  • 2013 [1]
  • 2010 [2]
  • 2009 [1]

Author by name

  • Cheng Y [16]
  • Yu Y [9]
  • Smith DM [8]
  • Chaban Y [7]
  • Cowtan K [7]
  • Li X [7]
  • Olek M [7]
  • Webb D [7]
  • Zhang P [7]
  • Coffino P [6]
  • Khavnekar S [6]
  • Myasnikov AG [6]
  • Wang F [6]
  • Yu Z [6]
  • Baker D [5]
  • Baumeister W [5]
  • Chuah J [5]
  • Chuah JJY [5]
  • Danev R [5]
  • Dimaio F [5]
  • Lander GC [5]
  • Smith D [5]
  • Augustyniak R [4]
  • Brunner MJ [4]
  • Conticello V [4]
  • Egelman E [4]
  • Huang R [4]
  • Karia D [4]
  • Kay LE [4]
  • Kotecha A [4]
  • Marlovits T [4]
  • Potter CS [4]
  • Ripstein ZA [4]
  • Rubinstein JL [4]
  • Song Y [4]
  • Xu C [4]
  • Yang W [4]
  • Agard DA [3]
  • Aricescu AR [3]
  • Barrass SV [3]
  • Basanta B [3]
  • Bepler T [3]
  • Berger B [3]
  • Brasch J [3]
  • Carragher B [3]
  • Cheng A [3]
  • Cushing VI [3]
  • Dolezal V [3]
  • Drabbels M [3]
  • Goldberg AL [3]
  • Greber BJ [3]
  • Harder OF [3]
  • Hruby J [3]
  • Koh AF [3]
  • Koh FA [3]
  • Lorenz UJ [3]
  • Malinsky M [3]
  • Mihaylov DB [3]
  • Morin A [3]
  • Mowry NJ [3]
  • Noble AJ [3]
  • Plitzko J [3]
  • Rexroad MS [3]
  • Shanel O [3]
  • Shapiro L [3]
  • Straub MS [3]
  • Tegunov D [3]
  • Vyroubal O [3]
  • Yu L [3]
  • Baker TA [2]
  • Barthelme D [2]
  • Campbell MG [2]
  • Chang SC [2]
  • Chen JZ [2]
  • Daugherty MR [2]
  • Eng ET [2]
  • Erdmann PS [2]
  • Erdmann PSE [2]
  • Evers WH [2]
  • Ginalski K [2]
  • Grabenstatter J [2]
  • Grant T [2]
  • Herzik Jr Ma [2]
  • Herzik MA [2]
  • Huber ST [2]
  • Huijink R [2]
  • Jakobi AJ [2]
  • Lazniewski M [2]
  • Majumder P [2]
  • Plitzko JM [2]
  • Rabl J [2]
  • Rice WJ [2]
  • Rui H [2]
  • Sarajlic E [2]
  • Sauer RT [2]
  • Veesler D [2]
  • Wan W [2]
  • Weis F [2]
  • Wietrzynski W [2]
  • Wu M [2]

Author by ORCID

  • Cheng Y [10]
  • Smith DM [7]
  • Olek M [7]
  • Webb D [7]
  • Yu Z [6]
  • Wang F [6]
  • Danev R [4]
  • Augustyniak R [4]
  • Chuah JJY [4]
  • Rubinstein JL [4]
  • Ripstein ZA [4]
  • Bepler T [3]
  • Barrass SV [3]
  • Drabbels M [3]
  • Hruby J [3]
  • Straub MS [3]
  • Lorenz UJ [3]
  • Rabl J [2]
  • Tegunov D [2]
  • Sauer RT [2]
  • Wu M [2]
  • Evers WH [2]
  • Kay LE [2]
  • Huang R [2]
  • Rui H [2]
  • Chang SC [2]
  • Jakobi AJ [2]
  • Weis F [2]
  • Campbell MG [2]
  • Huber ST [2]
  • Lander GC [2]
  • Meador K [1]
  • Yeates TO [1]
  • Leopold K [1]
  • Phillips C [1]
  • Wang J [1]
  • Xu K [1]
  • Salome AZ [1]
  • Cascio D [1]
  • Wang H [1]
  • Wang HW [1]
  • Coon JJ [1]
  • Bharat TAM [1]
  • Li S [1]
  • Liu Q [1]
  • Grigorieff N [1]
  • Tian M [1]
  • Cianfrocco MA [1]
  • Mcsweeney SM [1]
  • Castells-graells R [1]
  • Kotecha A [1]
  • Xu J [1]
  • Grant T [1]
  • Wei X [1]
  • Rice WJ [1]
  • Wang G [1]
  • Arbing MA [1]
  • Eng ET [1]
  • Patel A [1]
  • Sawaya MR [1]
  • Peng H [1]
  • Khavnekar S [1]
  • Fernandez JJ [1]
  • Kearney BM [1]
  • Agard DA [1]
  • Liu N [1]
  • Jahagirdar D [1]
  • Subramaniam S [1]
  • Lee KW [1]
  • Gee M [1]
  • Shao X [1]

Journal

  • ELIFE [19]
  • STRUCTURE [11]
  • BIORXIV [8]
  • NAT COMMUN [7]
  • J STRUCT BIOL [6]
  • NAT METHODS [6]
  • PNAS [6]
  • TO BE PUBLISHED [6]
  • COMMUN BIOL [3]
  • RES COMPUT MOL BIOL [3]
  • MOL CELL [2]
  • ANAL CHEM [1]
  • EMBO J [1]
  • IUCRJ [1]
  • J VIS EXP [1]

Software

  • RELION [22]
  • CRYOSPARC [10]
  • FREALIGN [5]
  • CTFFIND [4]
  • PARTICLE [2]
  • STOPGAP [2]
  • CHIMERA, MDFF [1]
  • CISTEM [1]
  • EMAN2, RELION, CTFFIND4 [1]
  • IMOD [1]
  • MATLAB [1]
  • TIGRIS, UNBLUR, FREALIGN [1]
  • WARP [1]

Microscope

  • FEI TITAN KRIOS [25]
  • FEI POLARA 300 [10]
  • FEI TECNAI F20 [8]
  • TFS KRIOS [8]
  • FEI TALOS ARCTICA [4]
  • TFS TUNDRA [3]
  • FEI TECNAI 20 [2]
  • JEOL 2100F [2]
  • JEOL 3200FSC [2]
  • FEI TECNAI 12 [1]
  • FEI TECNAI ARCTICA [1]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [66]
  • LAB6 [1]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [36]
  • GATAN K2 4K X 4K [9]
  • FEI FALCON III 4K X 4K [5]
  • GATAN K3 BIOQUANTUM 6K X 4K [4]
  • OTHER [4]
  • FEI FALCON IV 4K X 4K [2]
  • GATAN ULTRASCAN 4000 4K X 4K [2]
  • KODAK SO-163 FILM [2]
  • FEI CETA 4K X 4K [1]
  • GATAN K2 QUANTUM 4K X 4K [1]
  • GENERIC GATAN 4K X 4K [1]

External links

  • AlphaFold DB [19]
  • PDB [19]
  • PDBe-Kb [19]
  • UniProt [19]
  • EMPIAR [16]
  • Gene Ontology [16]
  • InterPro [16]
  • Pfam [14]
  • CATH [2]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
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EMD-51744
Download Map
3D View
Cryo-EM map conventional T20S proteasome
Release date: Dec. 11, 2024
Resolution: 2.6 Å
EM Method: Single-particle

Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ

Nat Methods (2025) 22 pp. 1880-1886 [ Pubmed: 40877464 DOI: doi:10.1038/s41592-025-02796-y ]

EMD-51745
Download Map
3D View
Cryo-EM map of revitrified T20S proteasome
Release date: Dec. 11, 2024
Resolution: 2.5 Å
EM Method: Single-particle

Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ

Nat Methods (2025) 22 pp. 1880-1886 [ Pubmed: 40877464 DOI: doi:10.1038/s41592-025-02796-y ]

EMD-51746
Download Map
3D View
Cryo-EM map of deposited and revitrified T20S proteasome
Release date: Dec. 11, 2024
Resolution: 2.8 Å
EM Method: Single-particle

Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ

Nat Methods (2025) 22 pp. 1880-1886 [ Pubmed: 40877464 DOI: doi:10.1038/s41592-025-02796-y ]

EMD-44914
Download Map
3D View
Thermoplasma acidophilum 20S proteasome alphaV24F
Release date: Oct. 30, 2024
Resolution: 2.2 Å
EM Method: Single-particle

Chuah JJY, Daugherty MR, Smith DM

bioRxiv (2025) [ DOI: doi:10.1101/2024.05.21.595185 Pubmed: 38826226 ]

EMD-44926
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3D View
Thermoplasma acidophilum 20S proteasome - alphaV24Y
Release date: Oct. 30, 2024
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 9buz
Q-score: 0.567

Chuah JJY, Daugherty MR, Smith DM

bioRxiv (2025) [ DOI: doi:10.1101/2024.05.21.595185 Pubmed: 38826226 ]

EMD-61187
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3D View
T.acidophilum 20S proteasome
Release date: Oct. 16, 2024
Resolution: 3.16 Å
EM Method: Single-particle

Shao X, Tian M, Wang G, Wang J, Wang H

Nat Commun (2024) [ DOI: doi:10.1038/s41467-024-52948-5 ]

EMD-51487
Download Map
3D View
T20S Proteosome at 2.7A from Falcon C imaged at 0.7Apix
Release date: Oct. 2, 2024
Resolution: 2.7 Å
EM Method: Single-particle

Karia D, Koh AF, Yang W, Cushing VI, Basanta B, Mihaylov DB, Khavnekar S, Vyroubal O, Malinsky M, Shanel O, Dolezal V, Plitzko J, Yu L, Lander GC, Aricescu AR, Greber BJ, Kotecha A

Structure (2025) 33 pp. 1717-1727.e4 [ Pubmed: 40744008 DOI: doi:10.1016/j.str.2025.07.007 ]

EMD-51503
Download Map
3D View
T20S Proteosome at 2.9A from Falcon C imaged at 0.9Apix
Release date: Oct. 2, 2024
Resolution: 2.9 Å
EM Method: Single-particle

Karia D, Koh AF, Yang W, Cushing VI, Basanta B, Mihaylov DB, Khavnekar S, Vyroubal O, Malinsky M, Shanel O, Dolezal V, Plitzko J, Yu L, Lander GC, Aricescu AR, Greber BJ, Kotecha A

Structure (2025) 33 pp. 1717-1727.e4 [ Pubmed: 40744008 DOI: doi:10.1016/j.str.2025.07.007 ]

EMD-37158
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3D View
Raw data
EMPIAR-11651
Graphene sandwiched 20S proteasome
Release date: Jan. 17, 2024
Resolution: 2.6 Å
EM Method: Single-particle

Xu J, Gao X, Zheng L, Jia X, Xu K, Ma Y, Wei X, Liu N, Peng H, Wang HW

PNAS (2024) 121 pp. e2309384121-e2309384121 [ DOI: doi:10.1073/pnas.2309384121 Pubmed: 38252835 ]

EMD-28876
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Thermoplasma acidophilum 20S proteasome - L81Y mutation in alpha subunit
Release date: Aug. 30, 2023
Resolution: 2.28 Å
EM Method: Single-particle
Fitted PDBs: 8f66
Q-score: 0.598

Chuah JJY, Rexroad MS, Smith DM

Commun Biol (2023) 6 pp. 733-733 [ Pubmed: 37454196 DOI: doi:10.1038/s42003-023-05123-3 ]

Sort by: Download
Showing 1 - 10 of 67. Page 1 of 7
Display:
Statistics
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Preview first 10
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Filter By

Current Database

  • EMDB [67]

Current status

  • REL [67]

Sample type

  • Complex [48]
  • Protein [34]
  • Sample [19]
  • Ligand [3]

Organism

  • Thermoplasma acidophilum [67]
  • Trypanosoma brucei [3]
  • Thermoplasma acidophilum [2]
  • Synthetic construct [1]

EM Method

  • Single-particle [63]
  • Subtomogram averaging [3]
  • Tomography [1]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [27]
  • ≥ 3Å and < 4Å [18]
  • ≥ 4Å and < 5Å [8]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [6]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 30Å [2]

Model molecular weight

  • 50-100 kDa [1]
  • 250-500 kDa [4]
  • 500-1000 kDa [14]

Release Date

  • 2024 [9]
  • 2023 [5]
  • 2022 [4]
  • 2021 [10]
  • 2020 [8]
  • 2018 [5]
  • 2017 [4]
  • 2016 [7]
  • 2015 [8]
  • 2014 [3]
  • 2013 [1]
  • 2010 [2]
  • 2009 [1]

Author by name

  • Cheng Y [16]
  • Yu Y [9]
  • Smith DM [8]
  • Chaban Y [7]
  • Cowtan K [7]
  • Li X [7]
  • Olek M [7]
  • Webb D [7]
  • Zhang P [7]
  • Coffino P [6]
  • Khavnekar S [6]
  • Myasnikov AG [6]
  • Wang F [6]
  • Yu Z [6]
  • Baker D [5]
  • Baumeister W [5]
  • Chuah J [5]
  • Chuah JJY [5]
  • Danev R [5]
  • Dimaio F [5]
  • Lander GC [5]
  • Smith D [5]
  • Augustyniak R [4]
  • Brunner MJ [4]
  • Conticello V [4]
  • Egelman E [4]
  • Huang R [4]
  • Karia D [4]
  • Kay LE [4]
  • Kotecha A [4]
  • Marlovits T [4]
  • Potter CS [4]
  • Ripstein ZA [4]
  • Rubinstein JL [4]
  • Song Y [4]
  • Xu C [4]
  • Yang W [4]
  • Agard DA [3]
  • Aricescu AR [3]
  • Barrass SV [3]
  • Basanta B [3]
  • Bepler T [3]
  • Berger B [3]
  • Brasch J [3]
  • Carragher B [3]
  • Cheng A [3]
  • Cushing VI [3]
  • Dolezal V [3]
  • Drabbels M [3]
  • Goldberg AL [3]
  • Greber BJ [3]
  • Harder OF [3]
  • Hruby J [3]
  • Koh AF [3]
  • Koh FA [3]
  • Lorenz UJ [3]
  • Malinsky M [3]
  • Mihaylov DB [3]
  • Morin A [3]
  • Mowry NJ [3]
  • Noble AJ [3]
  • Plitzko J [3]
  • Rexroad MS [3]
  • Shanel O [3]
  • Shapiro L [3]
  • Straub MS [3]
  • Tegunov D [3]
  • Vyroubal O [3]
  • Yu L [3]
  • Baker TA [2]
  • Barthelme D [2]
  • Campbell MG [2]
  • Chang SC [2]
  • Chen JZ [2]
  • Daugherty MR [2]
  • Eng ET [2]
  • Erdmann PS [2]
  • Erdmann PSE [2]
  • Evers WH [2]
  • Ginalski K [2]
  • Grabenstatter J [2]
  • Grant T [2]
  • Herzik Jr Ma [2]
  • Herzik MA [2]
  • Huber ST [2]
  • Huijink R [2]
  • Jakobi AJ [2]
  • Lazniewski M [2]
  • Majumder P [2]
  • Plitzko JM [2]
  • Rabl J [2]
  • Rice WJ [2]
  • Rui H [2]
  • Sarajlic E [2]
  • Sauer RT [2]
  • Veesler D [2]
  • Wan W [2]
  • Weis F [2]
  • Wietrzynski W [2]
  • Wu M [2]

Author by ORCID

  • Cheng Y [10]
  • Smith DM [7]
  • Olek M [7]
  • Webb D [7]
  • Yu Z [6]
  • Wang F [6]
  • Danev R [4]
  • Augustyniak R [4]
  • Chuah JJY [4]
  • Rubinstein JL [4]
  • Ripstein ZA [4]
  • Bepler T [3]
  • Barrass SV [3]
  • Drabbels M [3]
  • Hruby J [3]
  • Straub MS [3]
  • Lorenz UJ [3]
  • Rabl J [2]
  • Tegunov D [2]
  • Sauer RT [2]
  • Wu M [2]
  • Evers WH [2]
  • Kay LE [2]
  • Huang R [2]
  • Rui H [2]
  • Chang SC [2]
  • Jakobi AJ [2]
  • Weis F [2]
  • Campbell MG [2]
  • Huber ST [2]
  • Lander GC [2]
  • Meador K [1]
  • Yeates TO [1]
  • Leopold K [1]
  • Phillips C [1]
  • Wang J [1]
  • Xu K [1]
  • Salome AZ [1]
  • Cascio D [1]
  • Wang H [1]
  • Wang HW [1]
  • Coon JJ [1]
  • Bharat TAM [1]
  • Li S [1]
  • Liu Q [1]
  • Grigorieff N [1]
  • Tian M [1]
  • Cianfrocco MA [1]
  • Mcsweeney SM [1]
  • Castells-graells R [1]
  • Kotecha A [1]
  • Xu J [1]
  • Grant T [1]
  • Wei X [1]
  • Rice WJ [1]
  • Wang G [1]
  • Arbing MA [1]
  • Eng ET [1]
  • Patel A [1]
  • Sawaya MR [1]
  • Peng H [1]
  • Khavnekar S [1]
  • Fernandez JJ [1]
  • Kearney BM [1]
  • Agard DA [1]
  • Liu N [1]
  • Jahagirdar D [1]
  • Subramaniam S [1]
  • Lee KW [1]
  • Gee M [1]
  • Shao X [1]

Journal

  • ELIFE [19]
  • STRUCTURE [11]
  • BIORXIV [8]
  • NAT COMMUN [7]
  • J STRUCT BIOL [6]
  • NAT METHODS [6]
  • PNAS [6]
  • TO BE PUBLISHED [6]
  • COMMUN BIOL [3]
  • RES COMPUT MOL BIOL [3]
  • MOL CELL [2]
  • ANAL CHEM [1]
  • EMBO J [1]
  • IUCRJ [1]
  • J VIS EXP [1]

Software

  • RELION [22]
  • CRYOSPARC [10]
  • FREALIGN [5]
  • CTFFIND [4]
  • PARTICLE [2]
  • STOPGAP [2]
  • CHIMERA, MDFF [1]
  • CISTEM [1]
  • EMAN2, RELION, CTFFIND4 [1]
  • IMOD [1]
  • MATLAB [1]
  • TIGRIS, UNBLUR, FREALIGN [1]
  • WARP [1]

Microscope

  • FEI TITAN KRIOS [25]
  • FEI POLARA 300 [10]
  • FEI TECNAI F20 [8]
  • TFS KRIOS [8]
  • FEI TALOS ARCTICA [4]
  • TFS TUNDRA [3]
  • FEI TECNAI 20 [2]
  • JEOL 2100F [2]
  • JEOL 3200FSC [2]
  • FEI TECNAI 12 [1]
  • FEI TECNAI ARCTICA [1]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [66]
  • LAB6 [1]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [36]
  • GATAN K2 4K X 4K [9]
  • FEI FALCON III 4K X 4K [5]
  • GATAN K3 BIOQUANTUM 6K X 4K [4]
  • OTHER [4]
  • FEI FALCON IV 4K X 4K [2]
  • GATAN ULTRASCAN 4000 4K X 4K [2]
  • KODAK SO-163 FILM [2]
  • FEI CETA 4K X 4K [1]
  • GATAN K2 QUANTUM 4K X 4K [1]
  • GENERIC GATAN 4K X 4K [1]

External links

  • AlphaFold DB [19]
  • PDB [19]
  • PDBe-Kb [19]
  • UniProt [19]
  • EMPIAR [16]
  • Gene Ontology [16]
  • InterPro [16]
  • Pfam [14]
  • CATH [2]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]