Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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Filter By

Current Database

  • EMDB [122]

Current status

  • REL [122]

Sample type

  • Complex [120]
  • Protein [95]
  • Ligand [62]
  • RNA [41]
  • DNA [11]
  • Cell [2]
  • Sample [1]

Organism

  • Bacillus subtilis [122]
  • Bacillus subtilis [9]
  • Geobacillus thermodenitrificans [8]
  • Thermus thermophilus [6]
  • Synthetic construct [6]
  • Escherichia coli [5]
  • Mycobacterium tuberculosis [5]
  • Escherichia coli [4]
  • Lama glama [4]
  • Aequorea victoria [3]
  • Salmonella enterica [2]
  • Mycolicibacterium smegmatis [2]
  • Synthetic rna [2]
  • Mycolicibacterium smegmatis [2]
  • Bacillus phage sp01 [1]
  • Geobacillus stearothermophilus [1]
  • Amycolatopsis japonica [1]
  • Neobacillus vireti [1]
  • Haloarcula marismortui [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [119]
  • Tomography [2]
  • Helical reconstruction [1]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [13]
  • ≥ 3Å and < 4Å [84]
  • ≥ 4Å and < 5Å [13]
  • ≥ 5Å and < 6Å [4]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [1]
  • ≥ 30Å [1]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [2]
  • 100-250 kDa [39]
  • 250-500 kDa [10]
  • 500-1000 kDa [13]
  • 1-2 MDa [13]
  • 2-5 MDa [11]

Release Date

  • 2025 [22]
  • 2024 [11]
  • 2023 [27]
  • 2022 [24]
  • 2021 [4]
  • 2020 [23]
  • 2019 [6]
  • 2018 [2]
  • 2017 [1]
  • 2016 [1]
  • 2015 [1]

Author by name

  • Wilson DN [26]
  • Tenson T [18]
  • Atkinson GC [17]
  • Hauryliuk V [17]
  • Takada H [17]
  • Kasvandik S [16]
  • Crowe-mcauliffe C [15]
  • Murina V [15]
  • Joazeiro CAP [14]
  • Cerullo F [13]
  • Filbeck S [13]
  • Pfeffer S [13]
  • Tang Q [13]
  • Ignatova Z [12]
  • Mchaourab HS [12]
  • Orlando BJ [12]
  • Paternoga H [12]
  • Polte C [12]
  • Beckert B [11]
  • Bukau B [11]
  • Hofer FW [11]
  • Hofmann K [11]
  • Hung HC [11]
  • Kramer G [11]
  • Patil PR [11]
  • Schmitt J [11]
  • Vornberger J [11]
  • Xu H [11]
  • Li L [9]
  • Sinclair M [9]
  • Tajkhorshid E [9]
  • Wu X [9]
  • George NL [8]
  • Sun D [8]
  • Dimitrova-paternoga L [7]
  • Song C [7]
  • Yang S [7]
  • Anand R [6]
  • Gao N [6]
  • Hasdemir HS [6]
  • Karakas E [6]
  • Ma C [6]
  • Raina R [6]
  • Singh J [6]
  • Stein RA [6]
  • Vinothkumar KR [6]
  • Wang Y [6]
  • Babitzke P [5]
  • Chiba S [5]
  • Granneman S [5]
  • Mchaourab H [5]
  • Murakami KS [5]
  • Ou X [5]
  • Qayyum MZ [5]
  • Schoehn G [5]
  • Vishwakarma RK [5]
  • Wang D [5]
  • Xu J [5]
  • Abdelshahid M [4]
  • Arpin D [4]
  • Bange G [4]
  • Basu K [4]
  • Beckmann R [4]
  • Benoit N [4]
  • Dworkin J [4]
  • Feaga HA [4]
  • Fronzes R [4]
  • Fujiwara K [4]
  • Gubellini F [4]
  • Jenny KK [4]
  • Jovanovic M [4]
  • Kim JK [4]
  • Kopylov M [4]
  • Marko J [4]
  • Marza E [4]
  • Novacek J [4]
  • Oka GU [4]
  • Orlando MA [4]
  • Ortega J [4]
  • Palacios A [4]
  • Siroy A [4]
  • Steinchen W [4]
  • Zhang Y [4]
  • Berninghausen O [3]
  • Bisignano P [3]
  • Freibert SA [3]
  • Li Y [3]
  • Morlot C [3]
  • Tsaprailis G [3]
  • Adams DW [2]
  • Baek Y [2]
  • Barraud P [2]
  • Bauda E [2]
  • Blokesch M [2]
  • Boehmelt G [2]
  • Bourguet M [2]
  • Bouwer JC [2]
  • Brown SHJ [2]
  • Buskirk AR [2]
  • Catala M [2]

Author by ORCID

  • Wilson DN [26]
  • Atkinson GC [17]
  • Hauryliuk V [17]
  • Takada H [16]
  • Crowe-mcauliffe C [15]
  • Joazeiro CAP [14]
  • Filbeck S [13]
  • Pfeffer S [13]
  • Cerullo F [13]
  • Paternoga H [12]
  • Ignatova Z [12]
  • Schmitt J [11]
  • Kramer G [11]
  • Hofmann K [11]
  • Vornberger J [11]
  • Tang Q [11]
  • Hofer FW [11]
  • Bukau B [11]
  • Orlando BJ [10]
  • Mchaourab HS [10]
  • Tajkhorshid E [9]
  • Sinclair M [9]
  • George NL [8]
  • Karakas E [6]
  • Hasdemir HS [6]
  • Stein RA [6]
  • Anand R [6]
  • Raina R [6]
  • Singh J [6]
  • Vishwakarma RK [5]
  • Dimitrova-paternoga L [5]
  • Tenson T [5]
  • Schoehn G [5]
  • Xu J [5]
  • Kasvandik S [5]
  • Babitzke P [5]
  • Chiba S [5]
  • Granneman S [5]
  • Oka GU [4]
  • Gubellini F [4]
  • Marza E [4]
  • Siroy A [4]
  • Dworkin J [4]
  • Ortega J [4]
  • Kopylov M [4]
  • Fronzes R [4]
  • Novacek J [4]
  • Benoit N [4]
  • Bange G [3]
  • Morlot C [3]
  • Li L [3]
  • Tsaprailis G [3]
  • Bisignano P [3]
  • Shuman S [2]
  • Tisne C [2]
  • Moriscot C [2]
  • Kratzat H [2]
  • Koch HG [2]
  • Tolun G [2]
  • Okun A [2]
  • Schilmiller AL [2]
  • Czech L [2]
  • Miller M [2]
  • Gallet B [2]
  • Jaskolska M [2]
  • Morreale FE [2]
  • Oerum S [2]
  • Yang S [2]
  • Song C [2]
  • Junker S [2]
  • Gruber S [2]
  • Giammarinaro P [2]
  • Jia N [2]
  • Meinhart A [2]
  • Podlesainski D [2]
  • Shaw SJ [2]
  • Lewis PJ [2]
  • Condon C [2]
  • Catala M [2]
  • Szczelkun MD [2]
  • Mandal S [2]
  • Hoi DM [2]
  • Bourguet M [2]
  • Oakley AJ [2]
  • Hartl M [2]
  • Fujiwara K [2]
  • Junk L [2]
  • Effantin G [2]
  • Blokesch M [2]
  • Newing TP [2]
  • Freibert SA [2]
  • Turgay K [2]
  • Berninghausen O [2]
  • Adams DW [2]
  • Dawson CJ [2]
  • Dendooven T [2]
  • Jouneau PH [2]
  • Uchikawa E [2]
  • Luisi BF [2]
  • Trinquier A [2]

Journal

  • NAT COMMUN [28]
  • NATURE [16]
  • MOL CELL [15]
  • PNAS [14]
  • NUCLEIC ACIDS RES [9]
  • CELL [8]
  • ACS CHEM BIOL [6]
  • SCI ADV [5]
  • J BACTERIOL [4]
  • NAT STRUCT MOL BIOL [4]
  • TO BE PUBLISHED [4]
  • BIORXIV [3]
  • CELL REP [2]
  • STRUCTURE [2]
  • EMBO J [1]
  • J BIOL CHEM [1]
  • J.MICROBIOL [1]
  • NAT CHEM BIOL [1]
  • NAT MICROBIOL [1]

Software

  • RELION [49]
  • CRYOSPARC [16]
  • CTFFIND [2]
  • GCTF [2]
  • FREALIGN [1]
  • SIMPLE [1]
  • SPIDER [1]

Microscope

  • FEI TITAN KRIOS [101]
  • TFS KRIOS [10]
  • FEI TALOS ARCTICA [8]
  • FEI POLARA 300 [2]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [122]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [35]
  • GATAN K3 6K X 4K [27]
  • GATAN K3 BIOQUANTUM 6K X 4K [22]
  • FEI FALCON III 4K X 4K [13]
  • FEI FALCON IV 4K X 4K [13]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • TFS FALCON 4I 4K X 4K [3]
  • FEI FALCON II 4K X 4K [2]
  • DECTRIS ARINA 0.2K X 0.2K [1]
  • KODAK SO-163 FILM [1]
  • TVIPS TEMCAM-F816 8K X 8K [1]

External links

  • UniProt [93]
  • AlphaFold DB [92]
  • PDB [89]
  • Pfam [86]
  • PDBe-Kb [85]
  • Gene Ontology [82]
  • InterPro [75]
  • ChEBI [60]
  • DrugBank [58]
  • ChEMBL [54]
  • EMPIAR [17]
  • SCOP2 [4]
  • Complex Portal [1]
Sort by: Download
Showing 1 - 10 of 122. Page 1 of 13
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EMD-53202
Download Map
3D View
Focused Cryo-EM Map of the Dimeric Type VIIb Core Unit T7bCU with an additional YukB DUF and stalk domain
Release date: Nov. 26, 2025
Resolution: 7.2 Å
EM Method: Single-particle

Oka GU, Benoit N, Siroy A, Gubellini F, Marza E, Fronzes R

Sci Adv (2025) 11 pp. eady9587-eady9587 [ Pubmed: 41270170 DOI: doi:10.1126/sciadv.ady9587 ]

EMD-53218
Download Map
3D View
Focused Cryo-EM Map of the Dimeric Type VIIb Core Unit T7bCU
Release date: Nov. 26, 2025
Resolution: 6.9 Å
EM Method: Single-particle

Oka GU, Benoit N, Siroy A, Gubellini F, Marza E, Fronzes R

Sci Adv (2025) 11 pp. eady9587-eady9587 [ Pubmed: 41270170 DOI: doi:10.1126/sciadv.ady9587 ]

EMD-53219
Download Map
3D View
Focused Cryo-EM Map of the Type VIIb Core Unit T7bCU with an Additional YukB DUF and Stalk Domain
Release date: Nov. 26, 2025
Resolution: 4.12 Å
EM Method: Single-particle

Oka GU, Benoit N, Siroy A, Gubellini F, Marza E, Fronzes R

Sci Adv (2025) 11 pp. eady9587-eady9587 [ Pubmed: 41270170 DOI: doi:10.1126/sciadv.ady9587 ]

EMD-53220
Download Map
3D View
B subtilis Type VIIb Core Unit T7bCU DUF
Release date: Nov. 26, 2025
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9qks
Q-score: 0.433

Oka GU, Benoit N, Siroy A, Gubellini F, Marza E, Fronzes R

Sci Adv (2025) 11 pp. eady9587-eady9587 [ Pubmed: 41270170 DOI: doi:10.1126/sciadv.ady9587 ]

EMD-62902
Download Map
3D View
Bacillus subtilis endospore crust protein CgeA
Release date: Nov. 12, 2025
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 9l9d
Q-score: 0.444

Park M, Kim D, Baek Y, Jo E, Hyun J, Ha NC

J.Microbiol (2025) 63 pp. e2504013-e2504013 [ Pubmed: 41164959 DOI: doi:10.71150/jm.2504013 ]

EMD-46002
Download Map
3D View
BmrCD in the outward-facing conformation bound to Hoechsts
Release date: Oct. 22, 2025
Resolution: 3.1 Å
EM Method: Single-particle

Tang Q, Mchaourab HS

To Be Published

EMD-46003
Download Map
3D View
BmrCD in the outward-facing conformation bound to Hoechsts
Release date: Oct. 22, 2025
Resolution: 3.1 Å
EM Method: Single-particle

Tang Q, Mchaourab HS

To Be Published

EMD-70265
Download Map
3D View
ytrEF nucleotide-free conformation
Release date: Oct. 15, 2025
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9o9x
Q-score: 0.37

Yu P, Krah BS, Orlando MA, Subramanian S, Orlando BJ

Structure (2025) [ Pubmed: 41161309 DOI: doi:10.1016/j.str.2025.10.004 ]

EMD-70266
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3D View
Bacillus ytrEF vanadate trapped conformation
Release date: Oct. 15, 2025
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 9o9y
Q-score: 0.601

Yu P, Krah BS, Orlando MA, Subramanian S, Orlando BJ

Structure (2025) [ Pubmed: 41161309 DOI: doi:10.1016/j.str.2025.10.004 ]

EMD-52349
Download Map
3D View
Salmonella enterica Lamassu LmuACB bound to DNA duplex
Release date: Oct. 1, 2025
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 9hqx
Q-score: 0.398

Li Y, Adams DW, Liu HW, Shaw SJ, Uchikawa E, Jaskolska M, Stutzmann S, Righi L, Szczelkun MD, Blokesch M, Gruber S

Nat Struct Mol Biol (2025) 32 pp. 2503-2516 [ Pubmed: 41087596 DOI: doi:10.1038/s41594-025-01677-4 ]

Sort by: Download
Showing 1 - 10 of 122. Page 1 of 13
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Filter By

Current Database

  • EMDB [122]

Current status

  • REL [122]

Sample type

  • Complex [120]
  • Protein [95]
  • Ligand [62]
  • RNA [41]
  • DNA [11]
  • Cell [2]
  • Sample [1]

Organism

  • Bacillus subtilis [122]
  • Bacillus subtilis [9]
  • Geobacillus thermodenitrificans [8]
  • Thermus thermophilus [6]
  • Synthetic construct [6]
  • Escherichia coli [5]
  • Mycobacterium tuberculosis [5]
  • Escherichia coli [4]
  • Lama glama [4]
  • Aequorea victoria [3]
  • Salmonella enterica [2]
  • Mycolicibacterium smegmatis [2]
  • Synthetic rna [2]
  • Mycolicibacterium smegmatis [2]
  • Bacillus phage sp01 [1]
  • Geobacillus stearothermophilus [1]
  • Amycolatopsis japonica [1]
  • Neobacillus vireti [1]
  • Haloarcula marismortui [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [119]
  • Tomography [2]
  • Helical reconstruction [1]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [13]
  • ≥ 3Å and < 4Å [84]
  • ≥ 4Å and < 5Å [13]
  • ≥ 5Å and < 6Å [4]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [1]
  • ≥ 30Å [1]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [2]
  • 100-250 kDa [39]
  • 250-500 kDa [10]
  • 500-1000 kDa [13]
  • 1-2 MDa [13]
  • 2-5 MDa [11]

Release Date

  • 2025 [22]
  • 2024 [11]
  • 2023 [27]
  • 2022 [24]
  • 2021 [4]
  • 2020 [23]
  • 2019 [6]
  • 2018 [2]
  • 2017 [1]
  • 2016 [1]
  • 2015 [1]

Author by name

  • Wilson DN [26]
  • Tenson T [18]
  • Atkinson GC [17]
  • Hauryliuk V [17]
  • Takada H [17]
  • Kasvandik S [16]
  • Crowe-mcauliffe C [15]
  • Murina V [15]
  • Joazeiro CAP [14]
  • Cerullo F [13]
  • Filbeck S [13]
  • Pfeffer S [13]
  • Tang Q [13]
  • Ignatova Z [12]
  • Mchaourab HS [12]
  • Orlando BJ [12]
  • Paternoga H [12]
  • Polte C [12]
  • Beckert B [11]
  • Bukau B [11]
  • Hofer FW [11]
  • Hofmann K [11]
  • Hung HC [11]
  • Kramer G [11]
  • Patil PR [11]
  • Schmitt J [11]
  • Vornberger J [11]
  • Xu H [11]
  • Li L [9]
  • Sinclair M [9]
  • Tajkhorshid E [9]
  • Wu X [9]
  • George NL [8]
  • Sun D [8]
  • Dimitrova-paternoga L [7]
  • Song C [7]
  • Yang S [7]
  • Anand R [6]
  • Gao N [6]
  • Hasdemir HS [6]
  • Karakas E [6]
  • Ma C [6]
  • Raina R [6]
  • Singh J [6]
  • Stein RA [6]
  • Vinothkumar KR [6]
  • Wang Y [6]
  • Babitzke P [5]
  • Chiba S [5]
  • Granneman S [5]
  • Mchaourab H [5]
  • Murakami KS [5]
  • Ou X [5]
  • Qayyum MZ [5]
  • Schoehn G [5]
  • Vishwakarma RK [5]
  • Wang D [5]
  • Xu J [5]
  • Abdelshahid M [4]
  • Arpin D [4]
  • Bange G [4]
  • Basu K [4]
  • Beckmann R [4]
  • Benoit N [4]
  • Dworkin J [4]
  • Feaga HA [4]
  • Fronzes R [4]
  • Fujiwara K [4]
  • Gubellini F [4]
  • Jenny KK [4]
  • Jovanovic M [4]
  • Kim JK [4]
  • Kopylov M [4]
  • Marko J [4]
  • Marza E [4]
  • Novacek J [4]
  • Oka GU [4]
  • Orlando MA [4]
  • Ortega J [4]
  • Palacios A [4]
  • Siroy A [4]
  • Steinchen W [4]
  • Zhang Y [4]
  • Berninghausen O [3]
  • Bisignano P [3]
  • Freibert SA [3]
  • Li Y [3]
  • Morlot C [3]
  • Tsaprailis G [3]
  • Adams DW [2]
  • Baek Y [2]
  • Barraud P [2]
  • Bauda E [2]
  • Blokesch M [2]
  • Boehmelt G [2]
  • Bourguet M [2]
  • Bouwer JC [2]
  • Brown SHJ [2]
  • Buskirk AR [2]
  • Catala M [2]

Author by ORCID

  • Wilson DN [26]
  • Atkinson GC [17]
  • Hauryliuk V [17]
  • Takada H [16]
  • Crowe-mcauliffe C [15]
  • Joazeiro CAP [14]
  • Filbeck S [13]
  • Pfeffer S [13]
  • Cerullo F [13]
  • Paternoga H [12]
  • Ignatova Z [12]
  • Schmitt J [11]
  • Kramer G [11]
  • Hofmann K [11]
  • Vornberger J [11]
  • Tang Q [11]
  • Hofer FW [11]
  • Bukau B [11]
  • Orlando BJ [10]
  • Mchaourab HS [10]
  • Tajkhorshid E [9]
  • Sinclair M [9]
  • George NL [8]
  • Karakas E [6]
  • Hasdemir HS [6]
  • Stein RA [6]
  • Anand R [6]
  • Raina R [6]
  • Singh J [6]
  • Vishwakarma RK [5]
  • Dimitrova-paternoga L [5]
  • Tenson T [5]
  • Schoehn G [5]
  • Xu J [5]
  • Kasvandik S [5]
  • Babitzke P [5]
  • Chiba S [5]
  • Granneman S [5]
  • Oka GU [4]
  • Gubellini F [4]
  • Marza E [4]
  • Siroy A [4]
  • Dworkin J [4]
  • Ortega J [4]
  • Kopylov M [4]
  • Fronzes R [4]
  • Novacek J [4]
  • Benoit N [4]
  • Bange G [3]
  • Morlot C [3]
  • Li L [3]
  • Tsaprailis G [3]
  • Bisignano P [3]
  • Shuman S [2]
  • Tisne C [2]
  • Moriscot C [2]
  • Kratzat H [2]
  • Koch HG [2]
  • Tolun G [2]
  • Okun A [2]
  • Schilmiller AL [2]
  • Czech L [2]
  • Miller M [2]
  • Gallet B [2]
  • Jaskolska M [2]
  • Morreale FE [2]
  • Oerum S [2]
  • Yang S [2]
  • Song C [2]
  • Junker S [2]
  • Gruber S [2]
  • Giammarinaro P [2]
  • Jia N [2]
  • Meinhart A [2]
  • Podlesainski D [2]
  • Shaw SJ [2]
  • Lewis PJ [2]
  • Condon C [2]
  • Catala M [2]
  • Szczelkun MD [2]
  • Mandal S [2]
  • Hoi DM [2]
  • Bourguet M [2]
  • Oakley AJ [2]
  • Hartl M [2]
  • Fujiwara K [2]
  • Junk L [2]
  • Effantin G [2]
  • Blokesch M [2]
  • Newing TP [2]
  • Freibert SA [2]
  • Turgay K [2]
  • Berninghausen O [2]
  • Adams DW [2]
  • Dawson CJ [2]
  • Dendooven T [2]
  • Jouneau PH [2]
  • Uchikawa E [2]
  • Luisi BF [2]
  • Trinquier A [2]

Journal

  • NAT COMMUN [28]
  • NATURE [16]
  • MOL CELL [15]
  • PNAS [14]
  • NUCLEIC ACIDS RES [9]
  • CELL [8]
  • ACS CHEM BIOL [6]
  • SCI ADV [5]
  • J BACTERIOL [4]
  • NAT STRUCT MOL BIOL [4]
  • TO BE PUBLISHED [4]
  • BIORXIV [3]
  • CELL REP [2]
  • STRUCTURE [2]
  • EMBO J [1]
  • J BIOL CHEM [1]
  • J.MICROBIOL [1]
  • NAT CHEM BIOL [1]
  • NAT MICROBIOL [1]

Software

  • RELION [49]
  • CRYOSPARC [16]
  • CTFFIND [2]
  • GCTF [2]
  • FREALIGN [1]
  • SIMPLE [1]
  • SPIDER [1]

Microscope

  • FEI TITAN KRIOS [101]
  • TFS KRIOS [10]
  • FEI TALOS ARCTICA [8]
  • FEI POLARA 300 [2]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [122]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [35]
  • GATAN K3 6K X 4K [27]
  • GATAN K3 BIOQUANTUM 6K X 4K [22]
  • FEI FALCON III 4K X 4K [13]
  • FEI FALCON IV 4K X 4K [13]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • TFS FALCON 4I 4K X 4K [3]
  • FEI FALCON II 4K X 4K [2]
  • DECTRIS ARINA 0.2K X 0.2K [1]
  • KODAK SO-163 FILM [1]
  • TVIPS TEMCAM-F816 8K X 8K [1]

External links

  • UniProt [93]
  • AlphaFold DB [92]
  • PDB [89]
  • Pfam [86]
  • PDBe-Kb [85]
  • Gene Ontology [82]
  • InterPro [75]
  • ChEBI [60]
  • DrugBank [58]
  • ChEMBL [54]
  • EMPIAR [17]
  • SCOP2 [4]
  • Complex Portal [1]