Edit your search query here and hit Return to execute it:
natural_source_ncbi_code:"1586324"

Filter By

Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [11]
  • Protein [11]
  • Ligand [7]

Organism

  • Coronavirus hku15 [11]
  • Coronavirus hku15 [6]
  • Mus musculus [5]
  • Homo sapiens [3]
  • Mus sp. [1]
  • Canis lupus [1]
  • Lama glama [1]

EM Method

  • Single-particle [11]

Resolution

  • ≥ 2Å and < 3Å [7]
  • ≥ 3Å and < 4Å [4]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [4]
  • 250-500 kDa [2]

Release Date

  • 2024 [10]
  • 2017 [1]

Author by name

  • Tortorici MA [8]
  • Veesler D [8]
  • Asarnow D [7]
  • Balmelli A [7]
  • Benigni F [7]
  • Brown JT [7]
  • Corti D [7]
  • Culap K [7]
  • Dickinson MS [7]
  • Guarino B [7]
  • Leoni G [7]
  • Mccallum M [7]
  • Park YJ [7]
  • Perruzza L [7]
  • Quispe J [7]
  • Rexhepaj M [7]
  • Saliba C [7]
  • Seattle Structural Genomics Center For Infectious Disease Ssgcid [7]
  • Sprouse KR [7]
  • Starr TN [7]
  • Taylor AL [7]
  • Yoshiyama CN [7]
  • Center For Structural Genomics Of Infectious Diseases Csgid [4]
  • Bosch BJ [3]
  • Debski-antoniak O [2]
  • Drabek D [2]
  • Drulyte I [2]
  • Du W [2]
  • Grosveld F [2]
  • Hurdiss DL [2]
  • Van Dortmondt M [2]
  • Van Haperen R [2]
  • Van Kuppeveld Fjm [2]
  • Van Der Lee J [2]
  • Bi Y [1]
  • Chen Z [1]
  • Gao GF [1]
  • Hou X [1]
  • Li W [1]
  • Liu K [1]
  • Liu Z [1]
  • Mcguire AT [1]
  • Niu S [1]
  • Pan X [1]
  • Ren J [1]
  • Rey FA [1]
  • Shang G [1]
  • Si L [1]
  • Snijder J [1]
  • Sun J [1]
  • Sun JQ [1]
  • Tian WX [1]
  • Tian Y [1]
  • Walls AC [1]
  • Wang Q [1]
  • Wang Y [1]
  • Xiong X [1]
  • Yang B [1]
  • Yoshioka C [1]
  • Zhang D [1]

Author by ORCID

  • Tortorici MA [8]
  • Park YJ [7]
  • Van Kuppeveld Fjm [2]
  • Debski-antoniak O [2]
  • Du W [2]
  • Bosch BJ [2]
  • Van Der Lee J [2]
  • Grosveld F [2]
  • Drabek D [2]
  • Drulyte I [2]
  • Hurdiss DL [2]
  • Gao GF [1]
  • Xiong X [1]
  • Niu S [1]
  • Li W [1]
  • Walls AC [1]
  • Rey FA [1]
  • Mcguire AT [1]

Journal

  • IMMUNITY [7]
  • NAT COMMUN [2]
  • J VIROL [1]
  • PLOS PATHOG [1]

Software

  • CRYOSPARC [9]
  • RELION [7]
  • UCSF CHIMERAX [1]

Microscope

  • FEI TITAN KRIOS [9]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • FEI FALCON IV 4K X 4K [2]
  • GATAN K3 6K X 4K [2]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • UniProt [11]
  • ChEBI [7]
  • ChEMBL [7]
  • PDB [7]
  • PDBe-Kb [4]
  • AlphaFold DB [3]
  • DrugBank [2]
  • Gene Ontology [2]
  • InterPro [2]
  • Pfam [2]
Sort by: Download
Showing 1 - 10 of 11. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download
EMD-39694
Download Map
3D View
The structure of PDCoV RBD and dog APN complex
Release date: Dec. 11, 2024
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 8yzi
Q-score: 0.483

Tian Y, Sun J, Hou X, Liu Z, Chen Z, Pan X, Wang Y, Ren J, Zhang D, Yang B, Si L, Bi Y, Liu K, Shang G, Tian WX, Wang Q, Gao GF, Niu S

PLoS Pathog (2025) 21 pp. e1012836-e1012836 [ DOI: doi:10.1371/journal.ppat.1012836 Pubmed: 39774464 ]

EMD-44103
Download Map
3D View
Structure of the Porcine deltacoronavirus PDCoV receptor-binding domain bound to the PD33 antibody Fab fragment and the Kappa light chain nanobody
Release date: Nov. 13, 2024
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9b2c
Q-score: 0.548

Rexhepaj M, Asarnow D, Perruzza L, Park YJ, Guarino B, Mccallum M, Culap K, Saliba C, Leoni G, Balmelli A, Yoshiyama CN, Dickinson MS, Quispe J, Brown JT, Tortorici MA, Sprouse KR, Taylor AL, Corti D, Starr TN, Benigni F, Veesler D

Immunity (2024) 57 pp. 2914-2927.e7 [ DOI: doi:10.1016/j.immuni.2024.10.001 Pubmed: 39488210 ]

EMD-46804
Download Map
3D View
PDCoV S trimer bound by three copies of PD41 Fab
Release date: Nov. 13, 2024
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9dez
Q-score: 0.567

Rexhepaj M, Asarnow D, Perruzza L, Park YJ, Guarino B, Mccallum M, Culap K, Saliba C, Leoni G, Balmelli A, Yoshiyama CN, Dickinson MS, Quispe J, Brown JT, Tortorici MA, Sprouse KR, Taylor AL, Corti D, Starr TN, Benigni F, Veesler D

Immunity (2024) 57 pp. 2914- [ DOI: doi:10.1016/j.immuni.2024.10.001 Pubmed: 39488210 ]

EMD-46805
Download Map
3D View
PDCoV S RBD bound to PD41 Fab local refinement
Release date: Nov. 13, 2024
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9df0
Q-score: 0.562

Rexhepaj M, Asarnow D, Perruzza L, Park YJ, Guarino B, Mccallum M, Culap K, Saliba C, Leoni G, Balmelli A, Yoshiyama CN, Dickinson MS, Quispe J, Brown JT, Tortorici MA, Sprouse KR, Taylor AL, Corti D, Starr TN, Benigni F, Veesler D

Immunity (2024) 57 pp. 2914- [ DOI: doi:10.1016/j.immuni.2024.10.001 Pubmed: 39488210 ]

EMD-46806
Download Map
3D View
PDCoV S SD2018/300 Apo Class I
Release date: Nov. 13, 2024
Resolution: 2.8 Å
EM Method: Single-particle

Rexhepaj M, Asarnow D, Perruzza L, Park YJ, Guarino B, Mccallum M, Culap K, Saliba C, Leoni G, Balmelli A, Yoshiyama CN, Dickinson MS, Quispe J, Brown JT, Tortorici MA, Sprouse KR, Taylor AL, Corti D, Starr TN, Benigni F, Veesler D

Immunity (2024) 57 pp. 2914-2927.e7 [ DOI: doi:10.1016/j.immuni.2024.10.001 Pubmed: 39488210 ]

EMD-46814
Download Map
3D View
PDCoV S SD2018/300 with one PD41 Fab bound Class II
Release date: Nov. 13, 2024
Resolution: 2.7 Å
EM Method: Single-particle

Rexhepaj M, Asarnow D, Perruzza L, Park YJ, Guarino B, Mccallum M, Culap K, Saliba C, Leoni G, Balmelli A, Yoshiyama CN, Dickinson MS, Quispe J, Brown JT, Tortorici MA, Sprouse KR, Taylor AL, Corti D, Starr TN, Benigni F, Veesler D

Immunity (2024) 57 pp. 2914-2927.e7 [ DOI: doi:10.1016/j.immuni.2024.10.001 Pubmed: 39488210 ]

EMD-46815
Download Map
3D View
PDCoV S SD2018/300 with one PD41 Fab bound Class III
Release date: Nov. 13, 2024
Resolution: 2.6 Å
EM Method: Single-particle

Rexhepaj M, Asarnow D, Perruzza L, Park YJ, Guarino B, Mccallum M, Culap K, Saliba C, Leoni G, Balmelli A, Yoshiyama CN, Dickinson MS, Quispe J, Brown JT, Tortorici MA, Sprouse KR, Taylor AL, Corti D, Starr TN, Benigni F, Veesler D

Immunity (2024) 57 pp. 2914-2927.e7 [ DOI: doi:10.1016/j.immuni.2024.10.001 Pubmed: 39488210 ]

EMD-46816
Download Map
3D View
PDCoV S SD2018/300 with two PD41 Fabs bound Class IV
Release date: Nov. 13, 2024
Resolution: 2.8 Å
EM Method: Single-particle

Rexhepaj M, Asarnow D, Perruzza L, Park YJ, Guarino B, Mccallum M, Culap K, Saliba C, Leoni G, Balmelli A, Yoshiyama CN, Dickinson MS, Quispe J, Brown JT, Tortorici MA, Sprouse KR, Taylor AL, Corti D, Starr TN, Benigni F, Veesler D

Immunity (2024) 57 pp. 2914-2927.e7 [ DOI: doi:10.1016/j.immuni.2024.10.001 Pubmed: 39488210 ]

EMD-19016
Download Map
3D View
S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 42H3 antibody Fab fragments
Release date: June 5, 2024
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8r9y
Q-score: 0.522

Du W, Debski-Antoniak O, Drabek D, van Haperen R, van Dortmondt M, van der Lee J, Drulyte I, van Kuppeveld FJM, Grosveld F, Hurdiss DL, Bosch BJ

Nat Commun (2024) 15 pp. 5330-5330 [ Pubmed: 38909062 DOI: doi:10.1038/s41467-024-49693-0 ]

EMD-19017
Download Map
3D View
S1B domain of the PDCoV spike glycoprotein in complex with the 67B12 and 46E6 antibody Fab fragments
Release date: June 5, 2024
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8r9z
Q-score: 0.539

Du W, Debski-Antoniak O, Drabek D, van Haperen R, van Dortmondt M, van der Lee J, Drulyte I, van Kuppeveld FJM, Grosveld F, Hurdiss DL, Bosch BJ

Nat Commun (2024) 15 pp. 5330-5330 [ Pubmed: 38909062 DOI: doi:10.1038/s41467-024-49693-0 ]

Sort by: Download
Showing 1 - 10 of 11. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [11]
  • Protein [11]
  • Ligand [7]

Organism

  • Coronavirus hku15 [11]
  • Coronavirus hku15 [6]
  • Mus musculus [5]
  • Homo sapiens [3]
  • Mus sp. [1]
  • Canis lupus [1]
  • Lama glama [1]

EM Method

  • Single-particle [11]

Resolution

  • ≥ 2Å and < 3Å [7]
  • ≥ 3Å and < 4Å [4]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [4]
  • 250-500 kDa [2]

Release Date

  • 2024 [10]
  • 2017 [1]

Author by name

  • Tortorici MA [8]
  • Veesler D [8]
  • Asarnow D [7]
  • Balmelli A [7]
  • Benigni F [7]
  • Brown JT [7]
  • Corti D [7]
  • Culap K [7]
  • Dickinson MS [7]
  • Guarino B [7]
  • Leoni G [7]
  • Mccallum M [7]
  • Park YJ [7]
  • Perruzza L [7]
  • Quispe J [7]
  • Rexhepaj M [7]
  • Saliba C [7]
  • Seattle Structural Genomics Center For Infectious Disease Ssgcid [7]
  • Sprouse KR [7]
  • Starr TN [7]
  • Taylor AL [7]
  • Yoshiyama CN [7]
  • Center For Structural Genomics Of Infectious Diseases Csgid [4]
  • Bosch BJ [3]
  • Debski-antoniak O [2]
  • Drabek D [2]
  • Drulyte I [2]
  • Du W [2]
  • Grosveld F [2]
  • Hurdiss DL [2]
  • Van Dortmondt M [2]
  • Van Haperen R [2]
  • Van Kuppeveld Fjm [2]
  • Van Der Lee J [2]
  • Bi Y [1]
  • Chen Z [1]
  • Gao GF [1]
  • Hou X [1]
  • Li W [1]
  • Liu K [1]
  • Liu Z [1]
  • Mcguire AT [1]
  • Niu S [1]
  • Pan X [1]
  • Ren J [1]
  • Rey FA [1]
  • Shang G [1]
  • Si L [1]
  • Snijder J [1]
  • Sun J [1]
  • Sun JQ [1]
  • Tian WX [1]
  • Tian Y [1]
  • Walls AC [1]
  • Wang Q [1]
  • Wang Y [1]
  • Xiong X [1]
  • Yang B [1]
  • Yoshioka C [1]
  • Zhang D [1]

Author by ORCID

  • Tortorici MA [8]
  • Park YJ [7]
  • Van Kuppeveld Fjm [2]
  • Debski-antoniak O [2]
  • Du W [2]
  • Bosch BJ [2]
  • Van Der Lee J [2]
  • Grosveld F [2]
  • Drabek D [2]
  • Drulyte I [2]
  • Hurdiss DL [2]
  • Gao GF [1]
  • Xiong X [1]
  • Niu S [1]
  • Li W [1]
  • Walls AC [1]
  • Rey FA [1]
  • Mcguire AT [1]

Journal

  • IMMUNITY [7]
  • NAT COMMUN [2]
  • J VIROL [1]
  • PLOS PATHOG [1]

Software

  • CRYOSPARC [9]
  • RELION [7]
  • UCSF CHIMERAX [1]

Microscope

  • FEI TITAN KRIOS [9]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • FEI FALCON IV 4K X 4K [2]
  • GATAN K3 6K X 4K [2]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • UniProt [11]
  • ChEBI [7]
  • ChEMBL [7]
  • PDB [7]
  • PDBe-Kb [4]
  • AlphaFold DB [3]
  • DrugBank [2]
  • Gene Ontology [2]
  • InterPro [2]
  • Pfam [2]