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natural_source_ncbi_code:"142102"

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Current Database

  • EMDB [24]

Current status

  • REL [24]

Sample type

  • Complex [24]
  • RNA [24]
  • Protein [22]
  • Sample [13]
  • Ligand [11]

Organism

  • Taura syndrome virus [24]
  • Saccharomyces cerevisiae [24]

EM Method

  • Single-particle [24]

Resolution

  • ≥ 2Å and < 3Å [7]
  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [7]
  • ≥ 6Å and < 8Å [2]

Model molecular weight

  • 2-5 MDa [23]

Release Date

  • 2024 [5]
  • 2023 [6]
  • 2016 [11]
  • 2014 [2]

Author by name

  • Grigorieff N [13]
  • Koh CS [13]
  • Korostelev AA [13]
  • Abeyrathne PD [11]
  • Grant T [11]
  • Li H [11]
  • Zhao Y [11]
  • Rai J [7]
  • Brilot AF [2]

Author by ORCID

  • Grigorieff N [13]
  • Korostelev AA [13]
  • Koh CS [11]
  • Grant T [11]
  • Li H [10]
  • Rai J [6]
  • Zhao Y [6]
  • Brilot AF [2]

Journal

  • ELIFE [11]
  • SCI ADV [6]
  • TO BE PUBLISHED [5]
  • PNAS [2]

Software

  • CHIMERA [11]
  • UNBLUR, CTFFIND4, FREALIGN [11]
  • EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [2]
  • CHIMERA, CNS [1]

Microscope

  • FEI TITAN KRIOS [24]

Electron Source

  • FIELD EMISSION GUN [24]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]
  • GATAN K3 BIOQUANTUM 6K X 4K [11]
  • FEI FALCON I 4K X 4K [2]

External links

  • PDB [23]
  • AlphaFold DB [21]
  • PDBe-Kb [21]
  • UniProt [21]
  • ChEBI [11]
  • ChEMBL [11]
  • DrugBank [11]
  • Gene Ontology [11]
  • InterPro [11]
  • Pfam [11]
  • EMPIAR [8]
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Showing 1 - 10 of 24. Page 1 of 3
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EMD-40998
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3D View
Hypomethylated yeast 80S bound with Taura syndrome virus TSV internal ribosome entry site IRES , eEF2, GDP, and sordarin, Structure I
Release date: Dec. 11, 2024
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 8t3b
Q-score: 0.414

Zhao Y, Li H

To Be Published

EMD-40999
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3D View
Hypomethylated yeast 80S bound with Taura syndrome virus TSV internal ribosome entry site IRES , eEF2, GDP, and sordarin, Structure II
Release date: Dec. 11, 2024
Resolution: 3.86 Å
EM Method: Single-particle
Fitted PDBs: 8t3c
Q-score: 0.325

Zhao Y, Li H

To Be Published

EMD-41000
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Hypomethylated yeast 80S bound with Taura syndrome virus TSV internal ribosome entry site IRES , eEF2, GDP, and sordarin, Structure III
Release date: Dec. 11, 2024
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 8t3d
Q-score: 0.465

Zhao Y, Li H

To Be Published

EMD-41001
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Hypomethylated yeast 80S bound with Taura syndrome virus TSV internal ribosome entry site IRES , eEF2, GDP, and sordarin, Structure IV
Release date: Dec. 11, 2024
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8t3e
Q-score: 0.437

Zhao Y, Rai J, Li H

To Be Published

EMD-41002
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Hypomethylated yeast 80S bound with Taura syndrome virus TSV internal ribosome entry site IRES , eEF2, GDP, and sordarin, Structure V
Release date: Dec. 11, 2024
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 8t3f
Q-score: 0.423

Zhao Y, Li H

To Be Published

EMD-28610
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Raw data
EMPIAR-12070
Hypopseudouridylated yeast 80S bound with Taura syndrome virus TSV internal ribosome entry site IRES , eEF2 and GDP, Structure I
Release date: Sept. 6, 2023
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 8eub
Q-score: 0.319

Zhao Y, Rai J, Li H

Sci Adv (2023) 9 pp. eadg8190-eadg8190 [ DOI: doi:10.1126/sciadv.adg8190 Pubmed: 37595043 ]

EMD-28632
Download Map
3D View
Raw data
EMPIAR-12070
Hypopseudouridylated yeast 80S bound with Taura syndrome virus TSV internal ribosome entry site IRES , Structure I
Release date: Sept. 6, 2023
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 8evp
Q-score: 0.565

Zhao Y, Rai J, Li H

Sci Adv (2023) 9 pp. eadg8190-eadg8190 [ DOI: doi:10.1126/sciadv.adg8190 Pubmed: 37595043 ]

EMD-28633
Download Map
3D View
Raw data
EMPIAR-12070
Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I
Release date: Sept. 6, 2023
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 8evq
Q-score: 0.487

Zhao Y, Rai J, Li H

Sci Adv (2023) 9 pp. eadg8190-eadg8190 [ DOI: doi:10.1126/sciadv.adg8190 Pubmed: 37595043 ]

EMD-28634
Download Map
3D View
Raw data
EMPIAR-12070
Hypopseudouridylated yeast 80S bound with Taura syndrome virus TSV internal ribosome entry site IRES , eEF2, GDP, and sordarin, Structure II
Release date: Sept. 6, 2023
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8evr
Q-score: 0.47

Zhao Y, Rai J, Li H

Sci Adv (2023) 9 pp. eadg8190-eadg8190 [ DOI: doi:10.1126/sciadv.adg8190 Pubmed: 37595043 ]

EMD-28642
Download Map
3D View
Raw data
EMPIAR-12070
Hypopseudouridylated yeast 80S bound with Taura syndrome virus TSV internal ribosome entry site IRES , eEF2 and GDP, Structure III
Release date: Sept. 6, 2023
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8ewb
Q-score: 0.515

Zhao Y, Rai J, Li H

Sci Adv (2023) 9 pp. eadg8190-eadg8190 [ DOI: doi:10.1126/sciadv.adg8190 Pubmed: 37595043 ]

Sort by: Download
Showing 1 - 10 of 24. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [24]

Current status

  • REL [24]

Sample type

  • Complex [24]
  • RNA [24]
  • Protein [22]
  • Sample [13]
  • Ligand [11]

Organism

  • Taura syndrome virus [24]
  • Saccharomyces cerevisiae [24]

EM Method

  • Single-particle [24]

Resolution

  • ≥ 2Å and < 3Å [7]
  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [7]
  • ≥ 6Å and < 8Å [2]

Model molecular weight

  • 2-5 MDa [23]

Release Date

  • 2024 [5]
  • 2023 [6]
  • 2016 [11]
  • 2014 [2]

Author by name

  • Grigorieff N [13]
  • Koh CS [13]
  • Korostelev AA [13]
  • Abeyrathne PD [11]
  • Grant T [11]
  • Li H [11]
  • Zhao Y [11]
  • Rai J [7]
  • Brilot AF [2]

Author by ORCID

  • Grigorieff N [13]
  • Korostelev AA [13]
  • Koh CS [11]
  • Grant T [11]
  • Li H [10]
  • Rai J [6]
  • Zhao Y [6]
  • Brilot AF [2]

Journal

  • ELIFE [11]
  • SCI ADV [6]
  • TO BE PUBLISHED [5]
  • PNAS [2]

Software

  • CHIMERA [11]
  • UNBLUR, CTFFIND4, FREALIGN [11]
  • EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [2]
  • CHIMERA, CNS [1]

Microscope

  • FEI TITAN KRIOS [24]

Electron Source

  • FIELD EMISSION GUN [24]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]
  • GATAN K3 BIOQUANTUM 6K X 4K [11]
  • FEI FALCON I 4K X 4K [2]

External links

  • PDB [23]
  • AlphaFold DB [21]
  • PDBe-Kb [21]
  • UniProt [21]
  • ChEBI [11]
  • ChEMBL [11]
  • DrugBank [11]
  • Gene Ontology [11]
  • InterPro [11]
  • Pfam [11]
  • EMPIAR [8]