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natural_source_ncbi_code:"1392"

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Current Database

  • EMDB [21]

Current status

  • REL [21]

Sample type

  • Protein [18]
  • Complex [17]
  • Ligand [9]
  • Sample [4]
  • Virus [1]

Organism

  • Bacillus anthracis [21]
  • Mus musculus [1]
  • Enterobacteria phage t4 [1]
  • (no species) [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [20]
  • Subtomogram averaging [1]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [13]
  • ≥ 4Å and < 5Å [3]
  • ≥ 6Å and < 8Å [1]
  • ≥ 30Å [2]

Model molecular weight

  • 250-500 kDa [4]
  • 500-1000 kDa [7]
  • 1-2 MDa [2]

Release Date

  • 2024 [2]
  • 2022 [3]
  • 2021 [2]
  • 2020 [10]
  • 2015 [2]
  • 2010 [1]
  • 2007 [1]

Author by name

  • Hardenbrook NJ [6]
  • Krantz BA [6]
  • Liu S [6]
  • Zhou K [6]
  • Aktories K [4]
  • Antoni C [4]
  • Gatsogiannis C [4]
  • Ghosal K [4]
  • Hong Zhou Z [4]
  • Lang AE [4]
  • Quentin D [4]
  • Raunser S [4]
  • Zhou ZH [4]
  • Andra K [3]
  • Bann JG [3]
  • Battaile KP [3]
  • Day A [3]
  • Gonti S [3]
  • Huang W [3]
  • Lovell S [3]
  • Mamillapalli S [3]
  • Mehzabeen N [3]
  • Raju A [3]
  • Scott H [3]
  • Taylor DJ [3]
  • Zhang K [3]
  • Collier RJ [2]
  • Cui Y [2]
  • Jiang J [2]
  • Pentelute BL [2]
  • Alcalay R [1]
  • Battisti AJ [1]
  • Berger S [1]
  • Bowman VD [1]
  • Cecil AJ [1]
  • Chipman PR [1]
  • Cohen-schwartz S [1]
  • Faustin B [1]
  • Fioravanti A [1]
  • Fisher MT [1]
  • Fokine A [1]
  • Frank GA [1]
  • Freudenthal BD [1]
  • Garau G [1]
  • Halingstad EV [1]
  • Hoelzgen F [1]
  • Hyun J [1]
  • Hyun JK [1]
  • Kudryashev M [1]
  • Kumar N [1]
  • Leigh K [1]
  • Leigh KE [1]
  • Leppla SH [1]
  • Leysath CE [1]
  • Li Q [1]
  • Machen AJ [1]
  • Matico RE [1]
  • Mazor O [1]
  • Medley Q [1]
  • Miller R [1]
  • Mitra AK [1]
  • Pak AJ [1]
  • Radjainia M [1]
  • Rao VB [1]
  • Remaut H [1]
  • Ricketts MD [1]
  • Rossmann MG [1]
  • Shahar A [1]
  • Sharma S [1]
  • Sogues A [1]
  • Somani S [1]
  • Steele RA [1]
  • Van Der Verren Se [1]
  • Yu X [1]
  • Zalk R [1]

Author by ORCID

  • Hardenbrook NJ [6]
  • Raunser S [4]
  • Liu S [4]
  • Antoni C [4]
  • Ghosal K [4]
  • Zhou K [4]
  • Krantz BA [4]
  • Aktories K [4]
  • Hong Zhou Z [4]
  • Quentin D [4]
  • Raju A [3]
  • Mamillapalli S [3]
  • Day A [3]
  • Mazor O [1]
  • Cohen-schwartz S [1]
  • Yu X [1]
  • Frank GA [1]
  • Garau G [1]
  • Rao VB [1]
  • Somani S [1]
  • Steele RA [1]
  • Fioravanti A [1]
  • Sogues A [1]
  • Leigh K [1]
  • Shahar A [1]
  • Remaut H [1]
  • Mitra AK [1]
  • Alcalay R [1]
  • Pak AJ [1]
  • Hyun JK [1]
  • Kudryashev M [1]
  • Chipman PR [1]
  • Zalk R [1]
  • Battisti AJ [1]

Journal

  • NAT COMMUN [4]
  • PLOS PATHOG [4]
  • J MOL BIOL [3]
  • NATURE [2]
  • PNAS [2]
  • STRUCTURE [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • BIORXIV [1]
  • NAT STRUCT MOL BIOL [1]
  • SCI REP [1]
  • VIROLOGY [1]

Software

  • RELION [9]
  • SPHIRE [4]
  • CRYOSPARC [1]
  • DYNAMO [1]
  • SPIDER [1]
  • XMIPP [1]

Microscope

  • FEI TITAN KRIOS [17]
  • FEI POLARA 300 [1]
  • FEI TECNAI 12 [1]
  • FEI/PHILIPS CM300FEG/T [1]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [20]
  • LAB6 [1]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [15]
  • GATAN K2 4K X 4K [2]
  • KODAK SO-163 FILM [2]
  • FEI FALCON IV 4K X 4K [1]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • AlphaFold DB [16]
  • PDBe-Kb [16]
  • UniProt [16]
  • PDB [13]
  • Gene Ontology [12]
  • InterPro [12]
  • Pfam [12]
  • ChEBI [9]
  • DrugBank [9]
  • ChEMBL [2]
  • Complex Portal [1]
Sort by: Download
Showing 1 - 10 of 21. Page 1 of 3
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EMD-45459
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3D View
Structure of in vitro assembled B. anthracis S-layer protein Sap
Release date: Dec. 18, 2024
Resolution: 7.2 Å
EM Method: Subtomogram averaging

Sogues A, Leigh K, Halingstad EV, Van der Verren SE, Cecil AJ, Fioravanti A, Pak AJ, Kudryashev M, Remaut H

PNAS (2024) 121 pp. e2415351121-e2415351121 [ DOI: doi:10.1073/pnas.2415351121 Pubmed: 39652757 ]

EMD-29493
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3D View
Cryo-EM structure of human Needle/NAIP/NLRC4 R288A
Release date: Jan. 3, 2024
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8fvu
Q-score: 0.412

Matico RE, Yu X, Miller R, Somani S, Ricketts MD, Kumar N, Steele RA, Medley Q, Berger S, Faustin B, Sharma S

Nat Struct Mol Biol (2024) 31 pp. 82-91 [ DOI: doi:10.1038/s41594-023-01143-z Pubmed: 38177670 ]

EMD-25489
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3D View
cryoEM map of PA D425A mutant at pH 5.5 D7 symmetry class 1
Release date: April 6, 2022
Resolution: 2.9 Å
EM Method: Single-particle

Scott H, Huang W, Andra K, Mamillapalli S, Gonti S, Day A, Zhang K, Mehzabeen N, Battaile KP, Raju A, Lovell S, Bann JG, Taylor DJ

J Mol Biol (2022) 434 pp. 167548-167548 [ DOI: doi:10.1016/j.jmb.2022.167548 Pubmed: 35304125 ]

EMD-25490
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dimer of heptamer class 2
Release date: April 6, 2022
Resolution: 3.1 Å
EM Method: Single-particle

Scott H, Huang W, Andra K, Mamillapalli S, Gonti S, Day A, Zhang K, Mehzabeen N, Battaile KP, Raju A, Lovell S, Bann JG, Taylor DJ

J Mol Biol (2022) 434 pp. 167548-167548 [ DOI: doi:10.1016/j.jmb.2022.167548 Pubmed: 35304125 ]

EMD-25491
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3D View
heptamer of D425A mutant at pH 5.5
Release date: April 6, 2022
Resolution: 3.4 Å
EM Method: Single-particle

Scott H, Huang W, Andra K, Mamillapalli S, Gonti S, Day A, Zhang K, Mehzabeen N, Battaile KP, Raju A, Lovell S, Bann JG, Taylor DJ

J Mol Biol (2022) 434 pp. 167548-167548 [ DOI: doi:10.1016/j.jmb.2022.167548 Pubmed: 35304125 ]

EMD-23066
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Protective antigen pore translocating lethal factor N-terminal domain
Release date: July 14, 2021
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7kxr
Q-score: 0.315

Machen AJ, Fisher MT, Freudenthal BD

Sci Rep (2021) 11 pp. 13038-13038 [ DOI: doi:10.1038/s41598-021-91596-3 Pubmed: 34158520 ]

EMD-12761
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Anthrax toxin prepore in complex with the neutralizing Fab cAb29
Release date: April 28, 2021
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7o85
Q-score: 0.409

Hoelzgen F, Zalk R, Alcalay R, Cohen-Schwartz S, Garau G, Shahar A, Mazor O, Frank GA

Acta Crystallogr D Struct Biol (2021) 77 pp. 1197-1205 [ DOI: doi:10.1107/S2059798321007816 Pubmed: 34473089 ]

EMD-21365
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Anthrax octamer prechannel bound to full-length edema factor
Release date: Dec. 16, 2020
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6vra
Q-score: 0.435

Zhou K, Liu S, Hardenbrook NJ, Cui Y, Krantz BA, Zhou ZH

Structure (2020) 28 pp. 879-887.e3 [ DOI: doi:10.1016/j.str.2020.05.009 Pubmed: 32521227 ]

EMD-21694
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Anthrax octamer prechannel bound to full-length lethal factor
Release date: Dec. 16, 2020
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6wjj
Q-score: 0.428

Zhou K, Liu S, Hardenbrook NJ, Cui Y, Krantz BA, Zhou ZH

Structure (2020) 28 pp. 879-887.e3 [ DOI: doi:10.1016/j.str.2020.05.009 Pubmed: 32521227 ]

EMD-11522
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Fully-loaded anthrax lethal toxin in its heptameric pre-pore state, in which the third lethal factor is masked out PA7LF3-masked
Release date: Sept. 2, 2020
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6zxj
Q-score: 0.396

Antoni C, Quentin D, Lang AE, Aktories K, Gatsogiannis C, Raunser S

PLoS Pathog (2020) 16 pp. e1008530-e1008530 [ Pubmed: 32810181 DOI: doi:10.1371/journal.ppat.1008530 ]

Sort by: Download
Showing 1 - 10 of 21. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [21]

Current status

  • REL [21]

Sample type

  • Protein [18]
  • Complex [17]
  • Ligand [9]
  • Sample [4]
  • Virus [1]

Organism

  • Bacillus anthracis [21]
  • Mus musculus [1]
  • Enterobacteria phage t4 [1]
  • (no species) [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [20]
  • Subtomogram averaging [1]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [13]
  • ≥ 4Å and < 5Å [3]
  • ≥ 6Å and < 8Å [1]
  • ≥ 30Å [2]

Model molecular weight

  • 250-500 kDa [4]
  • 500-1000 kDa [7]
  • 1-2 MDa [2]

Release Date

  • 2024 [2]
  • 2022 [3]
  • 2021 [2]
  • 2020 [10]
  • 2015 [2]
  • 2010 [1]
  • 2007 [1]

Author by name

  • Hardenbrook NJ [6]
  • Krantz BA [6]
  • Liu S [6]
  • Zhou K [6]
  • Aktories K [4]
  • Antoni C [4]
  • Gatsogiannis C [4]
  • Ghosal K [4]
  • Hong Zhou Z [4]
  • Lang AE [4]
  • Quentin D [4]
  • Raunser S [4]
  • Zhou ZH [4]
  • Andra K [3]
  • Bann JG [3]
  • Battaile KP [3]
  • Day A [3]
  • Gonti S [3]
  • Huang W [3]
  • Lovell S [3]
  • Mamillapalli S [3]
  • Mehzabeen N [3]
  • Raju A [3]
  • Scott H [3]
  • Taylor DJ [3]
  • Zhang K [3]
  • Collier RJ [2]
  • Cui Y [2]
  • Jiang J [2]
  • Pentelute BL [2]
  • Alcalay R [1]
  • Battisti AJ [1]
  • Berger S [1]
  • Bowman VD [1]
  • Cecil AJ [1]
  • Chipman PR [1]
  • Cohen-schwartz S [1]
  • Faustin B [1]
  • Fioravanti A [1]
  • Fisher MT [1]
  • Fokine A [1]
  • Frank GA [1]
  • Freudenthal BD [1]
  • Garau G [1]
  • Halingstad EV [1]
  • Hoelzgen F [1]
  • Hyun J [1]
  • Hyun JK [1]
  • Kudryashev M [1]
  • Kumar N [1]
  • Leigh K [1]
  • Leigh KE [1]
  • Leppla SH [1]
  • Leysath CE [1]
  • Li Q [1]
  • Machen AJ [1]
  • Matico RE [1]
  • Mazor O [1]
  • Medley Q [1]
  • Miller R [1]
  • Mitra AK [1]
  • Pak AJ [1]
  • Radjainia M [1]
  • Rao VB [1]
  • Remaut H [1]
  • Ricketts MD [1]
  • Rossmann MG [1]
  • Shahar A [1]
  • Sharma S [1]
  • Sogues A [1]
  • Somani S [1]
  • Steele RA [1]
  • Van Der Verren Se [1]
  • Yu X [1]
  • Zalk R [1]

Author by ORCID

  • Hardenbrook NJ [6]
  • Raunser S [4]
  • Liu S [4]
  • Antoni C [4]
  • Ghosal K [4]
  • Zhou K [4]
  • Krantz BA [4]
  • Aktories K [4]
  • Hong Zhou Z [4]
  • Quentin D [4]
  • Raju A [3]
  • Mamillapalli S [3]
  • Day A [3]
  • Mazor O [1]
  • Cohen-schwartz S [1]
  • Yu X [1]
  • Frank GA [1]
  • Garau G [1]
  • Rao VB [1]
  • Somani S [1]
  • Steele RA [1]
  • Fioravanti A [1]
  • Sogues A [1]
  • Leigh K [1]
  • Shahar A [1]
  • Remaut H [1]
  • Mitra AK [1]
  • Alcalay R [1]
  • Pak AJ [1]
  • Hyun JK [1]
  • Kudryashev M [1]
  • Chipman PR [1]
  • Zalk R [1]
  • Battisti AJ [1]

Journal

  • NAT COMMUN [4]
  • PLOS PATHOG [4]
  • J MOL BIOL [3]
  • NATURE [2]
  • PNAS [2]
  • STRUCTURE [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • BIORXIV [1]
  • NAT STRUCT MOL BIOL [1]
  • SCI REP [1]
  • VIROLOGY [1]

Software

  • RELION [9]
  • SPHIRE [4]
  • CRYOSPARC [1]
  • DYNAMO [1]
  • SPIDER [1]
  • XMIPP [1]

Microscope

  • FEI TITAN KRIOS [17]
  • FEI POLARA 300 [1]
  • FEI TECNAI 12 [1]
  • FEI/PHILIPS CM300FEG/T [1]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [20]
  • LAB6 [1]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [15]
  • GATAN K2 4K X 4K [2]
  • KODAK SO-163 FILM [2]
  • FEI FALCON IV 4K X 4K [1]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • AlphaFold DB [16]
  • PDBe-Kb [16]
  • UniProt [16]
  • PDB [13]
  • Gene Ontology [12]
  • InterPro [12]
  • Pfam [12]
  • ChEBI [9]
  • DrugBank [9]
  • ChEMBL [2]
  • Complex Portal [1]