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natural_source_ncbi_code:"129951"

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Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [9]
  • DNA [9]
  • Ligand [9]
  • Protein [9]
  • Virus [2]

Organism

  • Human mastadenovirus c [11]
  • Homo sapiens [9]
  • Sus scrofa [6]
  • Trichoplusia ni [1]

EM Method

  • Single-particle [11]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [1]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [3]

Model molecular weight

  • 250-500 kDa [1]
  • 500-1000 kDa [4]
  • 1-2 MDa [4]

Release Date

  • 2023 [1]
  • 2021 [9]
  • 2019 [1]

Author by name

  • Aibara S [9]
  • Cramer P [9]
  • Schilbach S [9]
  • Hernando-perez M [2]
  • Martin-gonzalez N [2]
  • San Martin C [2]
  • De Pablo Pj [2]
  • Bauer M [1]
  • Condezo GN [1]
  • Gomez-gonzalez A [1]
  • Greber UF [1]
  • Hearing P [1]
  • Ostapchuk P [1]
  • Perez-illana M [1]
  • Reguera D [1]
  • Rengachari S [1]
  • San Martin M [1]
  • Siber A [1]

Author by ORCID

  • Cramer P [9]
  • Schilbach S [9]
  • Aibara S [9]
  • Martin-gonzalez N [2]
  • San Martin C [2]
  • Hernando-perez M [2]
  • Reguera D [1]
  • Bauer M [1]
  • Gomez-gonzalez A [1]
  • Siber A [1]
  • Greber UF [1]
  • De Pablo Pj [1]
  • Perez-illana M [1]

Journal

  • NATURE [9]
  • NUCLEIC ACIDS RES [1]
  • SCI ADV [1]

Software

  • RELION [2]
  • CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [9]
  • FEI TALOS ARCTICA [2]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [9]
  • FEI FALCON II 4K X 4K [2]

External links

  • AlphaFold DB [9]
  • ChEBI [9]
  • ChEMBL [9]
  • DrugBank [9]
  • Gene Ontology [9]
  • InterPro [9]
  • PDB [9]
  • PDBe-Kb [9]
  • Pfam [9]
  • UniProt [9]
  • Complex Portal [2]
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Showing 1 - 10 of 11. Page 1 of 2
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EMD-15694
Download Map
3D View
Human adenovirus type 5 lacking core protein V
Release date: July 12, 2023
Resolution: 4.4 Å
EM Method: Single-particle

Martin-Gonzalez N, Gomez-Gonzalez A, Hernando-Perez M, Bauer M, Greber UF, San Martin C, de Pablo PJ

Sci Adv (2023) 9 pp. eade9910-eade9910 [ Pubmed: 37027464 DOI: doi:10.1126/sciadv.ade9910 ]

EMD-12610
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3D View
Human Mediator with RNA Polymerase II Pre-initiation complex
Release date: May 5, 2021
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7nvr
Q-score: 0.171

Aibara S, Schilbach S, Cramer P

Nature (2021) 594 pp. 124-128 [ Pubmed: 33902107 DOI: doi:10.1038/s41586-021-03554-8 ]

EMD-12612
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3D View
RNA polymerase II core pre-initiation complex with closed promoter DNA in distal position
Release date: May 5, 2021
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7nvt
Q-score: 0.433

Aibara S, Schilbach S, Cramer P

Nature (2021) 594 pp. 124-128 [ Pubmed: 33902107 DOI: doi:10.1038/s41586-021-03554-8 ]

EMD-12613
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3D View
RNA polymerase II core pre-initiation complex with open promoter DNA
Release date: May 5, 2021
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7nvu
Q-score: 0.498

Aibara S, Schilbach S, Cramer P

Nature (2021) 594 pp. 124-128 [ Pubmed: 33902107 DOI: doi:10.1038/s41586-021-03554-8 ]

EMD-12614
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3D View
XPB-containing part of TFIIH in a post-translocated state with ADP-BeF3
Release date: May 5, 2021
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7nvv
Q-score: 0.499

Aibara S, Schilbach S, Cramer P

Nature (2021) 594 pp. 124-128 [ Pubmed: 33902107 DOI: doi:10.1038/s41586-021-03554-8 ]

EMD-12615
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3D View
TFIIH in a pre-translocated state without ADP-BeF3
Release date: May 5, 2021
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7nvw
Q-score: 0.279

Aibara S, Schilbach S, Cramer P

Nature (2021) 594 pp. 124-128 [ Pubmed: 33902107 DOI: doi:10.1038/s41586-021-03554-8 ]

EMD-12616
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3D View
TFIIH in a post-translocated state with ADP-BeF3
Release date: May 5, 2021
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7nvx
Q-score: 0.305

Aibara S, Schilbach S, Cramer P

Nature (2021) 594 pp. 124-128 [ Pubmed: 33902107 DOI: doi:10.1038/s41586-021-03554-8 ]

EMD-12617
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3D View
RNA polymerase II pre-initiation complex with closed promoter DNA in proximal position
Release date: May 5, 2021
Resolution: 7.3 Å
EM Method: Single-particle
Fitted PDBs: 7nvy
Q-score: 0.118

Aibara S, Schilbach S, Cramer P

Nature (2021) 594 pp. 124-128 [ Pubmed: 33902107 DOI: doi:10.1038/s41586-021-03554-8 ]

EMD-12618
Download Map
3D View
RNA polymerase II pre-initiation complex with closed promoter DNA in distal position
Release date: May 5, 2021
Resolution: 7.2 Å
EM Method: Single-particle
Fitted PDBs: 7nvz
Q-score: 0.111

Aibara S, Schilbach S, Cramer P

Nature (2021) 594 pp. 124-128 [ Pubmed: 33902107 DOI: doi:10.1038/s41586-021-03554-8 ]

EMD-12619
Download Map
3D View
RNA polymerase II pre-initiation complex with open promoter DNA
Release date: May 5, 2021
Resolution: 6.6 Å
EM Method: Single-particle
Fitted PDBs: 7nw0
Q-score: 0.119

Aibara S, Schilbach S, Cramer P

Nature (2021) 594 pp. 124-128 [ Pubmed: 33902107 DOI: doi:10.1038/s41586-021-03554-8 ]

Sort by: Download
Showing 1 - 10 of 11. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [9]
  • DNA [9]
  • Ligand [9]
  • Protein [9]
  • Virus [2]

Organism

  • Human mastadenovirus c [11]
  • Homo sapiens [9]
  • Sus scrofa [6]
  • Trichoplusia ni [1]

EM Method

  • Single-particle [11]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [1]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [3]

Model molecular weight

  • 250-500 kDa [1]
  • 500-1000 kDa [4]
  • 1-2 MDa [4]

Release Date

  • 2023 [1]
  • 2021 [9]
  • 2019 [1]

Author by name

  • Aibara S [9]
  • Cramer P [9]
  • Schilbach S [9]
  • Hernando-perez M [2]
  • Martin-gonzalez N [2]
  • San Martin C [2]
  • De Pablo Pj [2]
  • Bauer M [1]
  • Condezo GN [1]
  • Gomez-gonzalez A [1]
  • Greber UF [1]
  • Hearing P [1]
  • Ostapchuk P [1]
  • Perez-illana M [1]
  • Reguera D [1]
  • Rengachari S [1]
  • San Martin M [1]
  • Siber A [1]

Author by ORCID

  • Cramer P [9]
  • Schilbach S [9]
  • Aibara S [9]
  • Martin-gonzalez N [2]
  • San Martin C [2]
  • Hernando-perez M [2]
  • Reguera D [1]
  • Bauer M [1]
  • Gomez-gonzalez A [1]
  • Siber A [1]
  • Greber UF [1]
  • De Pablo Pj [1]
  • Perez-illana M [1]

Journal

  • NATURE [9]
  • NUCLEIC ACIDS RES [1]
  • SCI ADV [1]

Software

  • RELION [2]
  • CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [9]
  • FEI TALOS ARCTICA [2]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [9]
  • FEI FALCON II 4K X 4K [2]

External links

  • AlphaFold DB [9]
  • ChEBI [9]
  • ChEMBL [9]
  • DrugBank [9]
  • Gene Ontology [9]
  • InterPro [9]
  • PDB [9]
  • PDBe-Kb [9]
  • Pfam [9]
  • UniProt [9]
  • Complex Portal [2]