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natural_source_ncbi_code:"1299"

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Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Protein [6]
  • Complex [4]
  • Ligand [2]
  • RNA [2]
  • Cellular component [1]
  • Sample [1]

Organism

  • Deinococcus radiodurans [6]
  • Deinococcus radiodurans [2]

EM Method

  • Single-particle [6]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [2]
  • ≥ 8Å and < 12Å [1]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [1]
  • 250-500 kDa [1]
  • 1-2 MDa [1]

Release Date

  • 2024 [2]
  • 2023 [2]
  • 2022 [1]
  • 2013 [1]

Author by name

  • Alva V [2]
  • Bharat TAM [2]
  • Li H [2]
  • Van Dorst S [2]
  • Von Kuegelgen A [2]
  • Von Kugelgen A [2]
  • Bharat T [1]
  • Carabias A [1]
  • Chen X [1]
  • Druteika G [1]
  • Fowler CC [1]
  • Galan JE [1]
  • Karvelis T [1]
  • Kazlauskas D [1]
  • Montoya G [1]
  • Murshudov G [1]
  • Sasnauskas G [1]
  • Sexton DL [1]
  • Siksnys V [1]
  • Silanskas A [1]
  • Tamulaitiene G [1]
  • Taylor DW [1]
  • Tocheva EI [1]
  • Venclovas C [1]
  • Wang HW [1]
  • Wolin SL [1]
  • Yamashita K [1]

Author by ORCID

  • Von Kugelgen A [2]
  • Bharat TAM [2]
  • Van Dorst S [2]
  • Alva V [2]
  • Kazlauskas D [1]
  • Carabias A [1]
  • Fowler CC [1]
  • Wolin SL [1]
  • Li H [1]
  • Karvelis T [1]
  • Sexton DL [1]
  • Sasnauskas G [1]
  • Venclovas C [1]
  • Tocheva EI [1]
  • Yamashita K [1]
  • Taylor DW [1]
  • Silanskas A [1]
  • Montoya G [1]
  • Tamulaitiene G [1]
  • Li H [1]
  • Siksnys V [1]
  • Druteika G [1]

Journal

  • PNAS [2]
  • TO BE PUBLISHED [2]
  • CELL [1]
  • NATURE [1]

Software

  • RELION [3]
  • CRYOSPARC [2]
  • CHIMERA [1]
  • LEGINON, EMAN2, SPARX [1]

Microscope

  • FEI TITAN KRIOS [4]
  • FEI TECNAI 12 [1]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [5]
  • LAB6 [1]

Film or detector model

  • GATAN K3 6K X 4K [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • FEI FALCON III 4K X 4K [1]
  • TVIPS TEMCAM-F416 4K X 4K [1]

External links

  • AlphaFold DB [4]
  • PDB [4]
  • PDBe-Kb [4]
  • UniProt [4]
  • InterPro [3]
  • Pfam [3]
  • Gene Ontology [2]
  • ChEBI [1]
  • DrugBank [1]
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EMD-40458
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3D View
CryoEM structure of Deinococcus radiodurans BphP photosensory module in Pr state
Release date: May 22, 2024
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8sgk

Li H, Li H

To Be Published

EMD-40459
Download Map
3D View
Cryo-EM structure of Deinococcus radiodurans BphP in Pr state
Release date: May 22, 2024
Resolution: 9.3 Å
EM Method: Single-particle

Li H, Li H

To Be Published

EMD-16694
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3D View
Deinococcus radidurans HPI S-layer
Release date: April 19, 2023
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 8cka
Q-score: 0.582

von Kugelgen A, van Dorst S, Yamashita K, Sexton DL, Tocheva EI, Murshudov G, Alva V, Bharat TAM

PNAS (2023) 120 pp. e2215808120-e2215808120 [ Pubmed: 37043530 DOI: doi:10.1073/pnas.2215808120 ]

EMD-16016
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3D View
ISDra2 TnpB in complex with reRNA
Release date: April 12, 2023
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8bf8
Q-score: 0.497

Sasnauskas G, Tamulaitiene G, Druteika G, Carabias A, Silanskas A, Kazlauskas D, Venclovas C, Montoya G, Karvelis T, Siksnys V

Nature (2023) 616 pp. 384-389 [ Pubmed: 37020015 DOI: doi:10.1038/s41586-023-05826-x ]

EMD-15378
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3D View
Structure of trimeric SlpA outer membrane protein
Release date: Nov. 30, 2022
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 8ae1
Q-score: 0.568

von Kugelgen A, van Dorst S, Alva V, Bharat TAM

PNAS (2022) 119 pp. e2203156119-e2203156119 [ DOI: doi:10.1073/pnas.2203156119 Pubmed: 35943982 ]

EMD-5389
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3D View
An RNA Degradation Machine Sculpted by Ro Autoantigen and Noncoding RNA
Release date: April 3, 2013
Resolution: 25.0 Å
EM Method: Single-particle

Chen X, Taylor DW, Fowler CC, Galan JE, Wang HW, Wolin SL

Cell (2013) 153 pp. 166-177 [ DOI: doi:10.1016/j.cell.2013.02.037 Pubmed: 23540697 ]

Sort by: Download
Showing 1 - 6 of 6. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Protein [6]
  • Complex [4]
  • Ligand [2]
  • RNA [2]
  • Cellular component [1]
  • Sample [1]

Organism

  • Deinococcus radiodurans [6]
  • Deinococcus radiodurans [2]

EM Method

  • Single-particle [6]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [2]
  • ≥ 8Å and < 12Å [1]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [1]
  • 250-500 kDa [1]
  • 1-2 MDa [1]

Release Date

  • 2024 [2]
  • 2023 [2]
  • 2022 [1]
  • 2013 [1]

Author by name

  • Alva V [2]
  • Bharat TAM [2]
  • Li H [2]
  • Van Dorst S [2]
  • Von Kuegelgen A [2]
  • Von Kugelgen A [2]
  • Bharat T [1]
  • Carabias A [1]
  • Chen X [1]
  • Druteika G [1]
  • Fowler CC [1]
  • Galan JE [1]
  • Karvelis T [1]
  • Kazlauskas D [1]
  • Montoya G [1]
  • Murshudov G [1]
  • Sasnauskas G [1]
  • Sexton DL [1]
  • Siksnys V [1]
  • Silanskas A [1]
  • Tamulaitiene G [1]
  • Taylor DW [1]
  • Tocheva EI [1]
  • Venclovas C [1]
  • Wang HW [1]
  • Wolin SL [1]
  • Yamashita K [1]

Author by ORCID

  • Von Kugelgen A [2]
  • Bharat TAM [2]
  • Van Dorst S [2]
  • Alva V [2]
  • Kazlauskas D [1]
  • Carabias A [1]
  • Fowler CC [1]
  • Wolin SL [1]
  • Li H [1]
  • Karvelis T [1]
  • Sexton DL [1]
  • Sasnauskas G [1]
  • Venclovas C [1]
  • Tocheva EI [1]
  • Yamashita K [1]
  • Taylor DW [1]
  • Silanskas A [1]
  • Montoya G [1]
  • Tamulaitiene G [1]
  • Li H [1]
  • Siksnys V [1]
  • Druteika G [1]

Journal

  • PNAS [2]
  • TO BE PUBLISHED [2]
  • CELL [1]
  • NATURE [1]

Software

  • RELION [3]
  • CRYOSPARC [2]
  • CHIMERA [1]
  • LEGINON, EMAN2, SPARX [1]

Microscope

  • FEI TITAN KRIOS [4]
  • FEI TECNAI 12 [1]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [5]
  • LAB6 [1]

Film or detector model

  • GATAN K3 6K X 4K [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • FEI FALCON III 4K X 4K [1]
  • TVIPS TEMCAM-F416 4K X 4K [1]

External links

  • AlphaFold DB [4]
  • PDB [4]
  • PDBe-Kb [4]
  • UniProt [4]
  • InterPro [3]
  • Pfam [3]
  • Gene Ontology [2]
  • ChEBI [1]
  • DrugBank [1]