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natural_source_ncbi_code:"12022"

Filter By

Current Database

  • EMDB [35]

Current status

  • REL [35]

Sample type

  • Virus [29]
  • Protein [15]
  • Sample [14]
  • RNA [7]
  • Cellular component [3]
  • Complex [3]
  • Ligand [2]
  • DNA [1]

Organism

  • Escherichia phage ms2 [35]
  • Escherichia phage ms2 [11]
  • Escherichia coli [2]
  • Escherichia coli [1]

EM Method

  • Single-particle [33]
  • Subtomogram averaging [2]

Resolution

  • < 2Å [2]
  • ≥ 2Å and < 3Å [8]
  • ≥ 3Å and < 4Å [5]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [5]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [5]
  • ≥ 20Å and < 30Å [2]
  • ≥ 30Å [3]

Model molecular weight

  • 2-5 MDa [6]

Release Date

  • 2025 [8]
  • 2022 [7]
  • 2020 [2]
  • 2019 [1]
  • 2017 [1]
  • 2016 [5]
  • 2013 [1]
  • 2011 [7]
  • 2008 [3]

Author by name

  • Ranson NA [11]
  • Stockley PG [11]
  • Toropova K [10]
  • Twarock R [10]
  • Biela AP [7]
  • Fatehi F [7]
  • Heddle JG [7]
  • Naskalska A [7]
  • Baker S [5]
  • Dhaliwal HK [5]
  • Gamez EI [5]
  • Garmann RF [5]
  • Makasarashvili N [5]
  • Parent KN [5]
  • Rastandeh A [5]
  • Subramanian S [5]
  • Villarreal DA [5]
  • Akopjana I [4]
  • Carazo JM [4]
  • Gomez-blanco J [4]
  • Kazaks A [4]
  • Koning RI [4]
  • Koster AJ [4]
  • Rolfsson O [4]
  • Tars K [4]
  • Vargas J [4]
  • Basnak G [3]
  • Chang JY [3]
  • Cui Z [3]
  • Yang K [3]
  • Zhang J [3]
  • Bachmann V [2]
  • Bobe D [2]
  • Carratala A [2]
  • Cheung J [2]
  • Dermanci O [2]
  • Finn MG [2]
  • Guerrero-ferreira RC [2]
  • Huang J [2]
  • Jenkins MC [2]
  • Johnston JD [2]
  • Karasawa A [2]
  • Kohn T [2]
  • Kopylov M [2]
  • Leiman PG [2]
  • Minary P [2]
  • Nazarov S [2]
  • Piccinini L [2]
  • Zhong Q [2]
  • Zimanyi CM [2]
  • De Marco A [2]
  • Barker AM [1]
  • Barr JN [1]
  • Butaney K [1]
  • Dent KC [1]
  • Gomez Blanco J [1]
  • Hiscox JA [1]
  • Hu B [1]
  • Jakana J [1]
  • Jiang M [1]
  • Jung J [1]
  • Kennedy NW [1]
  • Liang S [1]
  • Meng R [1]
  • Nazarov SU [1]
  • Nazarov SY [1]
  • Thompson R [1]
  • Tullman-ercek D [1]
  • Wang Z [1]
  • Yu X [1]
  • De Castro Assumpcao D [1]

Author by ORCID

  • Stockley PG [11]
  • Ranson NA [11]
  • Toropova K [10]
  • Villarreal DA [5]
  • Parent KN [5]
  • Garmann RF [5]
  • Dhaliwal HK [5]
  • Makasarashvili N [5]
  • Rastandeh A [5]
  • Gamez EI [5]
  • Koning RI [4]
  • Vargas J [4]
  • Tars K [4]
  • Gomez-blanco J [4]
  • Koster AJ [4]
  • Rolfsson O [4]
  • Kazaks A [4]
  • Twarock R [3]
  • Zhang J [3]
  • Yang K [3]
  • Cui Z [3]
  • De Marco A [2]
  • Finn MG [2]
  • Carratala A [2]
  • Jenkins MC [2]
  • Cheung J [2]
  • Guerrero-ferreira RC [2]
  • Zimanyi CM [2]
  • Bobe D [2]
  • Leiman PG [2]
  • Kopylov M [2]
  • Kohn T [2]
  • Johnston JD [2]
  • Chang JY [2]
  • Zhong Q [2]
  • Karasawa A [2]
  • Tullman-ercek D [1]
  • Liang S [1]
  • Thompson R [1]
  • Hiscox JA [1]
  • Barr JN [1]
  • Meng R [1]
  • Barker AM [1]
  • Wang Z [1]

Journal

  • J MOL BIOL [10]
  • COMMUN MATER [7]
  • NAT COMMUN [5]
  • PNAS [5]
  • ENVIRON SCI TECHNOL [2]
  • RNA [2]
  • TO BE PUBLISHED [2]
  • ACS NANO [1]
  • STRUCTURE [1]

Software

  • CRYOSPARC [15]
  • SPIDER [10]
  • WARP [7]
  • CTFFIND [3]
  • RELION [3]
  • SCIPION, XMIPP, CTFFIND3, RELION [3]
  • CHIMERA [1]
  • IMOD, PEET [1]

Microscope

  • FEI TITAN KRIOS [11]
  • FEI TECNAI F20 [10]
  • TFS KRIOS [7]
  • FEI TECNAI 20 [4]
  • FEI POLARA 300 [1]
  • FEI TECNAI 12 [1]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [34]
  • LAB6 [1]

Film or detector model

  • GATAN K3 6K X 4K [7]
  • GATAN K3 BIOQUANTUM 6K X 4K [7]
  • KODAK SO-163 FILM [7]
  • FEI FALCON II 4K X 4K [4]
  • GATAN K2 SUMMIT 4K X 4K [3]
  • FEI EAGLE 4K X 4K [2]
  • GATAN ULTRASCAN 4000 4K X 4K [2]
  • GATAN ULTRASCAN 1000 2K X 2K [1]
  • TFS FALCON 4I 4K X 4K [1]

External links

  • PDB [6]
  • PDBe-Kb [5]
  • UniProt [5]
  • Gene Ontology [4]
  • Pfam [4]
  • EMPIAR [3]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
Sort by: Download
Showing 1 - 10 of 35. Page 1 of 4
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EMD-70484
Download Map
3D View
Cryo-EM structure of the assembled MS2 CPM58 VLP
Release date: Nov. 5, 2025
Resolution: 2.62 Å
EM Method: Single-particle
Fitted PDBs: 9oh5
Q-score: 0.593

Liang S, Butaney K, de Castro Assumpcao D, Jung J, Kennedy NW, Tullman-Ercek D

ACS Nano (2025) 19 pp. 39168-39180 [ DOI: doi:10.1021/acsnano.5c12293 Pubmed: 41159643 ]

EMD-72122
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3D View
MS2 bacteriophage coat protein after reassembly as a nanocrate MS2nc with no cargo and with waters modeled
Release date: Aug. 27, 2025
Resolution: 1.74 Å
EM Method: Single-particle
Fitted PDBs: 9q1b
Q-score: 0.8

Jenkins MC, Bobe D, Johnston JD, Cheung J, Karasawa A, Zimanyi CM, Dermanci O, Finn MG, de Marco A, Kopylov M

To Be Published

EMD-72124
Download Map
3D View
MS2 bacteriophage coat protein with waters modeled
Release date: Aug. 27, 2025
Resolution: 1.75 Å
EM Method: Single-particle
Fitted PDBs: 9q1d
Q-score: 0.789

Jenkins MC, Bobe D, Johnston JD, Cheung J, Karasawa A, Zimanyi CM, Dermanci O, Finn MG, de Marco A, Kopylov M

To Be Published

EMD-48864
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3D View
MS2-pMS2 Icosahedral Reconstruction
Release date: Aug. 6, 2025
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 9n40

Rastandeh A, Makasarashvili N, Dhaliwal HK, Baker S, Subramanian S, Villarreal DA, Gamez EI, Parent KN, Garmann RF

PNAS (2025) 122 pp. e2505190122-e2505190122 [ Pubmed: 40789029 DOI: doi:10.1073/pnas.2505190122 ]

EMD-48865
Download Map
3D View
MS2-pcoat Icosahedral Reconstruction
Release date: Aug. 6, 2025
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9n41

Rastandeh A, Makasarashvili N, Dhaliwal HK, Baker S, Subramanian S, Villarreal DA, Gamez EI, Parent KN, Garmann RF

PNAS (2025) 122 pp. e2505190122-e2505190122 [ Pubmed: 40789029 DOI: doi:10.1073/pnas.2505190122 ]

EMD-48866
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3D View
MS2-pMS2 D5 reconstruction
Release date: Aug. 6, 2025
Resolution: 3.5 Å
EM Method: Single-particle

Rastandeh A, Makasarashvili N, Dhaliwal HK, Baker S, Subramanian S, Villarreal DA, Gamez EI, Parent KN, Garmann RF

PNAS (2025) 122 pp. e2505190122-e2505190122 [ Pubmed: 40789029 DOI: doi:10.1073/pnas.2505190122 ]

EMD-48867
Download Map
3D View
MS2-pcoat D5 reconstruction
Release date: Aug. 6, 2025
Resolution: 3.3 Å
EM Method: Single-particle

Rastandeh A, Makasarashvili N, Dhaliwal HK, Baker S, Subramanian S, Villarreal DA, Gamez EI, Parent KN, Garmann RF

PNAS (2025) 122 pp. e2505190122-e2505190122 [ Pubmed: 40789029 DOI: doi:10.1073/pnas.2505190122 ]

EMD-48868
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3D View
MS2-pcoat C1 reconstruction
Release date: Aug. 6, 2025
Resolution: 3.5 Å
EM Method: Single-particle

Rastandeh A, Makasarashvili N, Dhaliwal HK, Baker S, Subramanian S, Villarreal DA, Gamez EI, Parent KN, Garmann RF

PNAS (2025) 122 pp. e2505190122-e2505190122 [ Pubmed: 40789029 DOI: doi:10.1073/pnas.2505190122 ]

EMD-12781
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3D View
MS2 coat protein dimer with 145-GGGSAHIVMVDAYKPTKGGGSGT-167 insertion VLP displaying icosahedral T 3 symmetry
Release date: Feb. 16, 2022
Resolution: 2.51 Å
EM Method: Single-particle

Biela AP, Naskalska A, Fatehi F, Twarock R, Heddle JG

Commun Mater (2022) 3 pp. 7- [ DOI: doi:10.1038/s43246-022-00229-3 ]

EMD-12782
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3D View
MS2 coat protein dimer with 145-GGGSAHIVMVDAYKPTKGGGSGT-167 insertion VLP displaying icosahedral T 4 symmetry
Release date: Feb. 16, 2022
Resolution: 2.76 Å
EM Method: Single-particle

Biela AP, Naskalska A, Fatehi F, Twarock R, Heddle JG

Commun Mater (2022) 3 pp. 7- [ DOI: doi:10.1038/s43246-022-00229-3 ]

Sort by: Download
Showing 1 - 10 of 35. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [35]

Current status

  • REL [35]

Sample type

  • Virus [29]
  • Protein [15]
  • Sample [14]
  • RNA [7]
  • Cellular component [3]
  • Complex [3]
  • Ligand [2]
  • DNA [1]

Organism

  • Escherichia phage ms2 [35]
  • Escherichia phage ms2 [11]
  • Escherichia coli [2]
  • Escherichia coli [1]

EM Method

  • Single-particle [33]
  • Subtomogram averaging [2]

Resolution

  • < 2Å [2]
  • ≥ 2Å and < 3Å [8]
  • ≥ 3Å and < 4Å [5]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [5]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [5]
  • ≥ 20Å and < 30Å [2]
  • ≥ 30Å [3]

Model molecular weight

  • 2-5 MDa [6]

Release Date

  • 2025 [8]
  • 2022 [7]
  • 2020 [2]
  • 2019 [1]
  • 2017 [1]
  • 2016 [5]
  • 2013 [1]
  • 2011 [7]
  • 2008 [3]

Author by name

  • Ranson NA [11]
  • Stockley PG [11]
  • Toropova K [10]
  • Twarock R [10]
  • Biela AP [7]
  • Fatehi F [7]
  • Heddle JG [7]
  • Naskalska A [7]
  • Baker S [5]
  • Dhaliwal HK [5]
  • Gamez EI [5]
  • Garmann RF [5]
  • Makasarashvili N [5]
  • Parent KN [5]
  • Rastandeh A [5]
  • Subramanian S [5]
  • Villarreal DA [5]
  • Akopjana I [4]
  • Carazo JM [4]
  • Gomez-blanco J [4]
  • Kazaks A [4]
  • Koning RI [4]
  • Koster AJ [4]
  • Rolfsson O [4]
  • Tars K [4]
  • Vargas J [4]
  • Basnak G [3]
  • Chang JY [3]
  • Cui Z [3]
  • Yang K [3]
  • Zhang J [3]
  • Bachmann V [2]
  • Bobe D [2]
  • Carratala A [2]
  • Cheung J [2]
  • Dermanci O [2]
  • Finn MG [2]
  • Guerrero-ferreira RC [2]
  • Huang J [2]
  • Jenkins MC [2]
  • Johnston JD [2]
  • Karasawa A [2]
  • Kohn T [2]
  • Kopylov M [2]
  • Leiman PG [2]
  • Minary P [2]
  • Nazarov S [2]
  • Piccinini L [2]
  • Zhong Q [2]
  • Zimanyi CM [2]
  • De Marco A [2]
  • Barker AM [1]
  • Barr JN [1]
  • Butaney K [1]
  • Dent KC [1]
  • Gomez Blanco J [1]
  • Hiscox JA [1]
  • Hu B [1]
  • Jakana J [1]
  • Jiang M [1]
  • Jung J [1]
  • Kennedy NW [1]
  • Liang S [1]
  • Meng R [1]
  • Nazarov SU [1]
  • Nazarov SY [1]
  • Thompson R [1]
  • Tullman-ercek D [1]
  • Wang Z [1]
  • Yu X [1]
  • De Castro Assumpcao D [1]

Author by ORCID

  • Stockley PG [11]
  • Ranson NA [11]
  • Toropova K [10]
  • Villarreal DA [5]
  • Parent KN [5]
  • Garmann RF [5]
  • Dhaliwal HK [5]
  • Makasarashvili N [5]
  • Rastandeh A [5]
  • Gamez EI [5]
  • Koning RI [4]
  • Vargas J [4]
  • Tars K [4]
  • Gomez-blanco J [4]
  • Koster AJ [4]
  • Rolfsson O [4]
  • Kazaks A [4]
  • Twarock R [3]
  • Zhang J [3]
  • Yang K [3]
  • Cui Z [3]
  • De Marco A [2]
  • Finn MG [2]
  • Carratala A [2]
  • Jenkins MC [2]
  • Cheung J [2]
  • Guerrero-ferreira RC [2]
  • Zimanyi CM [2]
  • Bobe D [2]
  • Leiman PG [2]
  • Kopylov M [2]
  • Kohn T [2]
  • Johnston JD [2]
  • Chang JY [2]
  • Zhong Q [2]
  • Karasawa A [2]
  • Tullman-ercek D [1]
  • Liang S [1]
  • Thompson R [1]
  • Hiscox JA [1]
  • Barr JN [1]
  • Meng R [1]
  • Barker AM [1]
  • Wang Z [1]

Journal

  • J MOL BIOL [10]
  • COMMUN MATER [7]
  • NAT COMMUN [5]
  • PNAS [5]
  • ENVIRON SCI TECHNOL [2]
  • RNA [2]
  • TO BE PUBLISHED [2]
  • ACS NANO [1]
  • STRUCTURE [1]

Software

  • CRYOSPARC [15]
  • SPIDER [10]
  • WARP [7]
  • CTFFIND [3]
  • RELION [3]
  • SCIPION, XMIPP, CTFFIND3, RELION [3]
  • CHIMERA [1]
  • IMOD, PEET [1]

Microscope

  • FEI TITAN KRIOS [11]
  • FEI TECNAI F20 [10]
  • TFS KRIOS [7]
  • FEI TECNAI 20 [4]
  • FEI POLARA 300 [1]
  • FEI TECNAI 12 [1]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [34]
  • LAB6 [1]

Film or detector model

  • GATAN K3 6K X 4K [7]
  • GATAN K3 BIOQUANTUM 6K X 4K [7]
  • KODAK SO-163 FILM [7]
  • FEI FALCON II 4K X 4K [4]
  • GATAN K2 SUMMIT 4K X 4K [3]
  • FEI EAGLE 4K X 4K [2]
  • GATAN ULTRASCAN 4000 4K X 4K [2]
  • GATAN ULTRASCAN 1000 2K X 2K [1]
  • TFS FALCON 4I 4K X 4K [1]

External links

  • PDB [6]
  • PDBe-Kb [5]
  • UniProt [5]
  • Gene Ontology [4]
  • Pfam [4]
  • EMPIAR [3]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]