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natural_source_ncbi_code:"1140"

Filter By

Current Database

  • EMDB [31]

Current status

  • REL [31]

Sample type

  • Complex [29]
  • Protein [23]
  • Ligand [10]
  • DNA [3]
  • Cell [2]

Organism

  • Synechococcus elongatus [31]
  • (no species) [4]
  • Synechococcus elongatus [3]
  • Synthetic construct [3]
  • Homo sapiens [1]

EM Method

  • Single-particle [23]
  • Subtomogram averaging [7]
  • Tomography [1]

Resolution

  • ≥ 2Å and < 3Å [11]
  • ≥ 3Å and < 4Å [10]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [2]
  • ≥ 8Å and < 12Å [3]
  • ≥ 12Å and < 16Å [1]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [3]
  • 250-500 kDa [3]
  • 500-1000 kDa [8]
  • 1-2 MDa [2]
  • 2-5 MDa [5]

Release Date

  • 2025 [4]
  • 2024 [10]
  • 2023 [8]
  • 2021 [3]
  • 2020 [5]
  • 2018 [1]

Author by name

  • Jiang YL [6]
  • Kong WW [6]
  • Chen Y [5]
  • Du K [5]
  • Hou P [5]
  • Huang XH [5]
  • Li B [5]
  • Sun F [5]
  • Wang YC [5]
  • Yang F [5]
  • Zhao HR [5]
  • Zhou CZ [5]
  • Zhou RQ [5]
  • Zhu Y [5]
  • Bange G [4]
  • Benesch JLP [4]
  • Bohn S [4]
  • Chang C-W [4]
  • Chang CW [4]
  • Chen FY [4]
  • Del Carmen Sanchez Olmos M [4]
  • Erb TJ [4]
  • Forchhammer K [4]
  • Hartl FU [4]
  • Hayer-hartl M [4]
  • Heimerl T [4]
  • Ho MC [4]
  • Hochberg G [4]
  • Hochberg GKA [4]
  • Hsu KC [4]
  • Huang IY [4]
  • Huang PH [4]
  • Liao JC [4]
  • Lo YK [4]
  • Lu KJ [4]
  • Mais CN [4]
  • Marklund EG [4]
  • Nussbaum E [4]
  • Paczia N [4]
  • Persson LJ [4]
  • Sadowska W [4]
  • Schindler D [4]
  • Schuller JM [4]
  • Sendker FL [4]
  • Tsai M-D [4]
  • Tsai MD [4]
  • Wang CH [4]
  • Wang H [4]
  • Wu HY [4]
  • Wu WJ [4]
  • Yang CH [4]
  • Corbett KD [3]
  • Fang M [3]
  • Golden SE [3]
  • Gu Y [3]
  • Huping W [3]
  • Leanca M [3]
  • Liwang A [3]
  • Liu LN [3]
  • Manajit HH [3]
  • Matyszewski M [3]
  • Sun Y [3]
  • Ulrich FH [3]
  • Yuzenkova Y [3]
  • Zang K [3]
  • Zhang P [3]
  • Babenko A [2]
  • Bischoff AJ [2]
  • Brunner A [2]
  • Cao D [2]
  • Cao DF [2]
  • Cao P [2]
  • Chang W [2]
  • Cuylen-haering S [2]
  • Dykes GF [2]
  • Ellenberg J [2]
  • Fung HKH [2]
  • Hayashi Y [2]
  • Lafrance B [2]
  • Lafrance BJ [2]
  • Li M [2]
  • Liu Z [2]
  • Mahamid J [2]
  • Mueller CW [2]
  • Muller CW [2]
  • Ni T [2]
  • Nichols RJ [2]
  • Nogales E [2]
  • Oltrogge LM [2]
  • Phillips NR [2]
  • Radford DR [2]
  • Salo VT [2]
  • Savage DF [2]
  • Si L [2]
  • Su X [2]
  • Tian L [2]
  • Valentin-alvarado LE [2]
  • Zagoriy I [2]
  • Zhang X [2]
  • Aigner H [1]

Author by ORCID

  • Hou P [5]
  • Lu KJ [4]
  • Sendker FL [4]
  • Persson LJ [4]
  • Schindler D [4]
  • Yang CH [4]
  • Huang IY [4]
  • Bohn S [4]
  • Benesch JLP [4]
  • Liao JC [4]
  • Ho MC [4]
  • Hochberg GKA [4]
  • Wu WJ [4]
  • Chen FY [4]
  • Bange G [4]
  • Hsu KC [4]
  • Schuller JM [4]
  • Lo YK [4]
  • Marklund EG [4]
  • Tsai MD [4]
  • Wang CH [4]
  • Forchhammer K [4]
  • Erb TJ [4]
  • Paczia N [4]
  • Chang CW [4]
  • Corbett KD [3]
  • Hayer-hartl M [3]
  • Gu Y [3]
  • Golden SE [3]
  • Zang K [3]
  • Hartl FU [3]
  • Wang H [3]
  • Matyszewski M [3]
  • Fang M [3]
  • Yuzenkova Y [3]
  • Liwang A [3]
  • Oltrogge LM [2]
  • Ellenberg J [2]
  • Mahamid J [2]
  • Fung HKH [2]
  • Babenko A [2]
  • Nogales E [2]
  • Zhang X [2]
  • Cuylen-haering S [2]
  • Cao D [2]
  • Li M [2]
  • Sun Y [2]
  • Salo VT [2]
  • Radford DR [2]
  • Nichols RJ [2]
  • Liu LN [2]
  • Savage DF [2]
  • Lafrance B [2]
  • Tian L [2]
  • Bischoff AJ [2]
  • Phillips NR [2]
  • Muller CW [2]
  • Zagoriy I [2]
  • Hayashi Y [2]
  • Si L [2]
  • Price GD [1]
  • Kong WW [1]
  • Ni T [1]
  • Dykes GF [1]
  • Sarsby J [1]
  • Eyers CE [1]
  • Nguyen ND [1]
  • Long BM [1]
  • Chen T [1]
  • Hee WY [1]
  • Huang F [1]
  • Li K [1]
  • Zhang P [1]
  • Sheng Y [1]
  • Ge X [1]

Journal

  • NATURE [5]
  • STRUCTURE [5]
  • NAT METAB [4]
  • TO BE PUBLISHED [4]
  • NAT STRUCT MOL BIOL [3]
  • BIORXIV [2]
  • ELIFE [2]
  • NAT METHODS [2]
  • NAT PLANTS [2]
  • EMBO J [1]
  • NAT COMMUN [1]
  • PLANT PHYSIOL [1]
  • PNAS [1]

Software

  • RELION [8]
  • CRYOSPARC [4]
  • PHENIX [2]
  • EMCLARITY [1]
  • WARP [1]

Microscope

  • FEI TITAN KRIOS [21]
  • TFS KRIOS [5]
  • TFS GLACIOS [2]
  • FEI TALOS ARCTICA [1]
  • FEI TECNAI 20 [1]
  • FEI TECNAI ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [30]
  • OTHER [1]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [16]
  • GATAN K3 BIOQUANTUM 6K X 4K [7]
  • FEI FALCON IV 4K X 4K [6]
  • GATAN K3 6K X 4K [2]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • UniProt [22]
  • PDB [21]
  • AlphaFold DB [19]
  • PDBe-Kb [19]
  • Gene Ontology [18]
  • Pfam [18]
  • InterPro [15]
  • ChEBI [9]
  • ChEMBL [9]
  • DrugBank [9]
  • EMPIAR [4]
  • SCOP2 [2]
  • CATH [1]
Sort by: Download
Showing 1 - 10 of 31. Page 1 of 4
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EMD-47221
Download Map
3D View
CryoEM structure of Syn7942 RNAP-SigA holoenzyme
Release date: Oct. 15, 2025
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 9dvs
Q-score: 0.511

Fang M, Gu Y, Leanca M, Matyszewski M, LiWang A, Yuzenkova Y, Corbett KD, Golden SE

To Be Published

EMD-47222
Download Map
3D View
Cryo-EM structure of RpaA bound to PkaiBC DNA and the CTD of the alpha subunit of RNAP from the cyanobacterium Synechococcus elongatus
Release date: Oct. 15, 2025
Resolution: 3.74 Å
EM Method: Single-particle
Fitted PDBs: 9dvt
Q-score: 0.317

Fang M, Gu Y, Leanca M, Matyszewski M, LiWang A, Yuzenkova Y, Corbett KD, Golden SE

To Be Published

EMD-47223
Composite map
Download Map
3D View
CryoEM structure of RpaA bound to PkaiBC DNA and Syn7942 RNAP-SigA holoenzyme
Release date: Oct. 15, 2025
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9dvu
Q-score: 0.435

Fang M, Gu Y, Leanca M, Matyszewski M, LiWang A, Yuzenkova Y, Corbett KD, Golden SE

To Be Published

EMD-50836
Download Map
3D View
Rubisco in native beta-carboxysomes
Release date: May 7, 2025
Resolution: 3.5 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9fwv
Q-score: 0.212

Sun Y, Sheng Y, Ni T, Ge X, Sarsby J, Brownridge PJ, Li K, Hardenbrook N, Dykes GF, Rockliffe N, Eyers CE, Zhang P, Liu LN

Plant Physiol (2024) 197 [ DOI: doi:10.1093/plphys/kiae665 Pubmed: 39680612 ]

EMD-36461
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3D View
Structure of a synthetic circadian clock protein KaiC mutant of cyanobacteria Synechococcus elongatus PCC 7942
Release date: June 12, 2024
Resolution: 2.51 Å
EM Method: Single-particle
Fitted PDBs: 8jon
Q-score: 0.55

Li S, Zhou Z, Wan Y, Jia X, Wang P, Wang Y, Zuo T, Cheng H, Fang X, Dong S, He J, Yang Y, Xu Y, Fu S, Wang X, Qin X, Xie Q, Xu X, Zhao Y, Liang D, Zhang P, Zhang Q, Guo J

EMBO J (2025) 44 pp. 3025-3046 [ DOI: doi:10.1038/s44318-025-00425-0 Pubmed: 40210722 ]

EMD-37727
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3D View
Cryo-ET structure of RuBisCO from 3.9 angstroms Synechococcus elongatus PCC 7942
Release date: May 15, 2024
Resolution: 3.9 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8wpz
Q-score: 0.444

Kong WW, Zhu Y, Zhao HR, Du K, Zhou RQ, Li B, Yang F, Hou P, Huang XH, Chen Y, Wang YC, Sun F, Jiang YL, Zhou CZ

Structure (2024) 32 pp. 1110-1120.e4 [ DOI: doi:10.1016/j.str.2024.05.007 Pubmed: 38823379 ]

EMD-37728
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3D View
Cryo-ET map of RuBisCO at 4.4 angstroms from Synechococcus elongatus PCC 7942 beta-carboxysome
Release date: May 15, 2024
Resolution: 4.4 Å
EM Method: Subtomogram averaging

Kong WW, Zhu Y, Zhao HR, Du K, Zhou RQ, Li B, Yang F, Hou P, Huang XH, Chen Y, Wang YC, Sun F, Jiang YL, Zhou CZ

Structure (2024) 32 pp. 1110-1120.e4 [ DOI: doi:10.1016/j.str.2024.05.007 Pubmed: 38823379 ]

EMD-37729
Download Map
3D View
Cryo-ET map of RuBisCO-SSUL at 5.9 angstroms from Synechococcus elongatus PCC 7942 beta-carboxysome
Release date: May 15, 2024
Resolution: 5.9 Å
EM Method: Subtomogram averaging

Kong WW, Zhu Y, Zhao HR, Du K, Zhou RQ, Li B, Yang F, Hou P, Huang XH, Chen Y, Wang YC, Sun F, Jiang YL, Zhou CZ

Structure (2024) 32 pp. 1110-1120.e4 [ DOI: doi:10.1016/j.str.2024.05.007 Pubmed: 38823379 ]

EMD-37730
Download Map
3D View
Cryo-ET map of RuBisCO at the outermost layer that is loosely attached to the shell of Synechococcus elongatus PCC 7942 beta-carboxysome
Release date: May 15, 2024
Resolution: 8.4 Å
EM Method: Subtomogram averaging

Kong WW, Zhu Y, Zhao HR, Du K, Zhou RQ, Li B, Yang F, Hou P, Huang XH, Chen Y, Wang YC, Sun F, Jiang YL, Zhou CZ

Structure (2024) 32 pp. 1110-1120.e4 [ DOI: doi:10.1016/j.str.2024.05.007 Pubmed: 38823379 ]

EMD-37731
Download Map
3D View
Cryo-ET map of RuBisCO at the outermost layer that is tightly attached to the shell of Synechococcus elongatus PCC 7942 beta-carboxysome
Release date: May 15, 2024
Resolution: 8.0 Å
EM Method: Subtomogram averaging

Kong WW, Zhu Y, Zhao HR, Du K, Zhou RQ, Li B, Yang F, Hou P, Huang XH, Chen Y, Wang YC, Sun F, Jiang YL, Zhou CZ

Structure (2024) 32 pp. 1110-1120.e4 [ DOI: doi:10.1016/j.str.2024.05.007 Pubmed: 38823379 ]

Sort by: Download
Showing 1 - 10 of 31. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [31]

Current status

  • REL [31]

Sample type

  • Complex [29]
  • Protein [23]
  • Ligand [10]
  • DNA [3]
  • Cell [2]

Organism

  • Synechococcus elongatus [31]
  • (no species) [4]
  • Synechococcus elongatus [3]
  • Synthetic construct [3]
  • Homo sapiens [1]

EM Method

  • Single-particle [23]
  • Subtomogram averaging [7]
  • Tomography [1]

Resolution

  • ≥ 2Å and < 3Å [11]
  • ≥ 3Å and < 4Å [10]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [2]
  • ≥ 8Å and < 12Å [3]
  • ≥ 12Å and < 16Å [1]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [3]
  • 250-500 kDa [3]
  • 500-1000 kDa [8]
  • 1-2 MDa [2]
  • 2-5 MDa [5]

Release Date

  • 2025 [4]
  • 2024 [10]
  • 2023 [8]
  • 2021 [3]
  • 2020 [5]
  • 2018 [1]

Author by name

  • Jiang YL [6]
  • Kong WW [6]
  • Chen Y [5]
  • Du K [5]
  • Hou P [5]
  • Huang XH [5]
  • Li B [5]
  • Sun F [5]
  • Wang YC [5]
  • Yang F [5]
  • Zhao HR [5]
  • Zhou CZ [5]
  • Zhou RQ [5]
  • Zhu Y [5]
  • Bange G [4]
  • Benesch JLP [4]
  • Bohn S [4]
  • Chang C-W [4]
  • Chang CW [4]
  • Chen FY [4]
  • Del Carmen Sanchez Olmos M [4]
  • Erb TJ [4]
  • Forchhammer K [4]
  • Hartl FU [4]
  • Hayer-hartl M [4]
  • Heimerl T [4]
  • Ho MC [4]
  • Hochberg G [4]
  • Hochberg GKA [4]
  • Hsu KC [4]
  • Huang IY [4]
  • Huang PH [4]
  • Liao JC [4]
  • Lo YK [4]
  • Lu KJ [4]
  • Mais CN [4]
  • Marklund EG [4]
  • Nussbaum E [4]
  • Paczia N [4]
  • Persson LJ [4]
  • Sadowska W [4]
  • Schindler D [4]
  • Schuller JM [4]
  • Sendker FL [4]
  • Tsai M-D [4]
  • Tsai MD [4]
  • Wang CH [4]
  • Wang H [4]
  • Wu HY [4]
  • Wu WJ [4]
  • Yang CH [4]
  • Corbett KD [3]
  • Fang M [3]
  • Golden SE [3]
  • Gu Y [3]
  • Huping W [3]
  • Leanca M [3]
  • Liwang A [3]
  • Liu LN [3]
  • Manajit HH [3]
  • Matyszewski M [3]
  • Sun Y [3]
  • Ulrich FH [3]
  • Yuzenkova Y [3]
  • Zang K [3]
  • Zhang P [3]
  • Babenko A [2]
  • Bischoff AJ [2]
  • Brunner A [2]
  • Cao D [2]
  • Cao DF [2]
  • Cao P [2]
  • Chang W [2]
  • Cuylen-haering S [2]
  • Dykes GF [2]
  • Ellenberg J [2]
  • Fung HKH [2]
  • Hayashi Y [2]
  • Lafrance B [2]
  • Lafrance BJ [2]
  • Li M [2]
  • Liu Z [2]
  • Mahamid J [2]
  • Mueller CW [2]
  • Muller CW [2]
  • Ni T [2]
  • Nichols RJ [2]
  • Nogales E [2]
  • Oltrogge LM [2]
  • Phillips NR [2]
  • Radford DR [2]
  • Salo VT [2]
  • Savage DF [2]
  • Si L [2]
  • Su X [2]
  • Tian L [2]
  • Valentin-alvarado LE [2]
  • Zagoriy I [2]
  • Zhang X [2]
  • Aigner H [1]

Author by ORCID

  • Hou P [5]
  • Lu KJ [4]
  • Sendker FL [4]
  • Persson LJ [4]
  • Schindler D [4]
  • Yang CH [4]
  • Huang IY [4]
  • Bohn S [4]
  • Benesch JLP [4]
  • Liao JC [4]
  • Ho MC [4]
  • Hochberg GKA [4]
  • Wu WJ [4]
  • Chen FY [4]
  • Bange G [4]
  • Hsu KC [4]
  • Schuller JM [4]
  • Lo YK [4]
  • Marklund EG [4]
  • Tsai MD [4]
  • Wang CH [4]
  • Forchhammer K [4]
  • Erb TJ [4]
  • Paczia N [4]
  • Chang CW [4]
  • Corbett KD [3]
  • Hayer-hartl M [3]
  • Gu Y [3]
  • Golden SE [3]
  • Zang K [3]
  • Hartl FU [3]
  • Wang H [3]
  • Matyszewski M [3]
  • Fang M [3]
  • Yuzenkova Y [3]
  • Liwang A [3]
  • Oltrogge LM [2]
  • Ellenberg J [2]
  • Mahamid J [2]
  • Fung HKH [2]
  • Babenko A [2]
  • Nogales E [2]
  • Zhang X [2]
  • Cuylen-haering S [2]
  • Cao D [2]
  • Li M [2]
  • Sun Y [2]
  • Salo VT [2]
  • Radford DR [2]
  • Nichols RJ [2]
  • Liu LN [2]
  • Savage DF [2]
  • Lafrance B [2]
  • Tian L [2]
  • Bischoff AJ [2]
  • Phillips NR [2]
  • Muller CW [2]
  • Zagoriy I [2]
  • Hayashi Y [2]
  • Si L [2]
  • Price GD [1]
  • Kong WW [1]
  • Ni T [1]
  • Dykes GF [1]
  • Sarsby J [1]
  • Eyers CE [1]
  • Nguyen ND [1]
  • Long BM [1]
  • Chen T [1]
  • Hee WY [1]
  • Huang F [1]
  • Li K [1]
  • Zhang P [1]
  • Sheng Y [1]
  • Ge X [1]

Journal

  • NATURE [5]
  • STRUCTURE [5]
  • NAT METAB [4]
  • TO BE PUBLISHED [4]
  • NAT STRUCT MOL BIOL [3]
  • BIORXIV [2]
  • ELIFE [2]
  • NAT METHODS [2]
  • NAT PLANTS [2]
  • EMBO J [1]
  • NAT COMMUN [1]
  • PLANT PHYSIOL [1]
  • PNAS [1]

Software

  • RELION [8]
  • CRYOSPARC [4]
  • PHENIX [2]
  • EMCLARITY [1]
  • WARP [1]

Microscope

  • FEI TITAN KRIOS [21]
  • TFS KRIOS [5]
  • TFS GLACIOS [2]
  • FEI TALOS ARCTICA [1]
  • FEI TECNAI 20 [1]
  • FEI TECNAI ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [30]
  • OTHER [1]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [16]
  • GATAN K3 BIOQUANTUM 6K X 4K [7]
  • FEI FALCON IV 4K X 4K [6]
  • GATAN K3 6K X 4K [2]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • UniProt [22]
  • PDB [21]
  • AlphaFold DB [19]
  • PDBe-Kb [19]
  • Gene Ontology [18]
  • Pfam [18]
  • InterPro [15]
  • ChEBI [9]
  • ChEMBL [9]
  • DrugBank [9]
  • EMPIAR [4]
  • SCOP2 [2]
  • CATH [1]