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Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Protein [4]
  • Sample [4]
  • Virus [4]
  • Complex [2]

Organism

  • Dengue virus [6]
  • Homo sapiens [4]

EM Method

  • Single-particle [6]

Resolution

  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [3]
  • ≥ 16Å and < 20Å [2]

Model molecular weight

  • 5-10 MDa [1]
  • > 10 MDa [5]

Release Date

  • 2021 [2]
  • 2014 [1]
  • 2013 [2]
  • 2012 [1]

Author by name

  • Kostyuchenko VA [6]
  • Lok SM [5]
  • Tan JL [5]
  • Ng TS [4]
  • Fibriansah G [3]
  • Anand GS [2]
  • Bond PJ [2]
  • Chew VSY [2]
  • Crowe Jr Je [2]
  • Huber RG [2]
  • Lim EXY [2]
  • Lim XN [2]
  • Marzinek JK [2]
  • Shi J [2]
  • Tan LC [2]
  • Zhang Q [2]
  • Alonso S [1]
  • Aung M [1]
  • Chan AH [1]
  • Chan SH [1]
  • Crowe JE [1]
  • Fisher D [1]
  • Hanson B [1]
  • Hanson BJ [1]
  • Harris E [1]
  • Ibarra KD [1]
  • Kemeny DM [1]
  • Kukkaro P [1]
  • Leo S [1]
  • Leo YS [1]
  • Lim A [1]
  • Lim AP [1]
  • Lok S-M [1]
  • Macary PA [1]
  • Ng G [1]
  • Ng JK [1]
  • Ng ML [1]
  • Ng T-S [1]
  • Ooi EE [1]
  • Schul W [1]
  • Shi PY [1]
  • Smith KG [1]
  • Smith KGC [1]
  • Smith SA [1]
  • Tan GK [1]
  • Tan TT [1]
  • Teo EW [1]
  • Teoh EP [1]
  • Yip A [1]
  • Zou G [1]
  • De Alwis R [1]
  • De Silva A [1]

Author by ORCID

  • Kostyuchenko VA [6]
  • Lok SM [5]
  • Fibriansah G [3]
  • Huber RG [2]
  • Lim XN [2]
  • Chew VSY [2]
  • Anand GS [2]
  • Crowe Jr Je [2]
  • Ng TS [2]
  • Marzinek JK [2]
  • Bond PJ [2]
  • Shi J [2]
  • Harris E [1]
  • Zou G [1]
  • Lok S-M [1]
  • Ooi EE [1]
  • Macary PA [1]
  • Smith KG [1]

Journal

  • J VIROL [2]
  • PLOS PATHOG [2]
  • EMBO MOL MED [1]
  • SCI TRANSL MED [1]

Software

  • CHIMERA [3]
  • EMAN, MPSA [2]
  • MPSA [2]
  • GPU-ADAPTED, EMAN1 [1]
  • GPU-ADAPTED, EMAN1, EMAN2 [1]
  • RELION [1]

Microscope

  • FEI TITAN KRIOS [6]

Electron Source

  • FIELD EMISSION GUN [6]

Film or detector model

  • FEI FALCON II 4K X 4K [2]
  • GENERIC GATAN 4K X 4K [2]
  • FEI FALCON I 4K X 4K [1]
  • GENERIC GATAN [1]

External links

  • PDB [6]
  • AlphaFold DB [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]
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Showing 1 - 6 of 6. Page 1 of 1
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EMD-30883
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3D View
Cryo-EM structure of Dengue virus serotype 1 strain WestPac 74 in complex with human antibody 1C19 Fab at 37 deg C Class 1 particle
Release date: Feb. 17, 2021
Resolution: 19.0 Å
EM Method: Single-particle
Fitted PDBs: 7dwt
Q-score: 0.022

Fibriansah G, Lim EXY, Marzinek JK, Ng TS, Tan JL, Huber RG, Lim XN, Chew VSY, Kostyuchenko VA, Shi J, Anand GS, Bond PJ, Crowe Jr JE, Lok SM

PLoS Pathog (2021) 17 pp. e1009331-e1009331 [ Pubmed: 33621239 DOI: doi:10.1371/journal.ppat.1009331 ]

EMD-30884
Download Map
3D View
Cryo-EM structure of Dengue virus serotype 1 strain WestPac 74 in complex with human antibody 1C19 Fab at 37 deg C Class 2 particle
Release date: Feb. 17, 2021
Resolution: 19.0 Å
EM Method: Single-particle
Fitted PDBs: 7dwu
Q-score: 0.021

Fibriansah G, Lim EXY, Marzinek JK, Ng TS, Tan JL, Huber RG, Lim XN, Chew VSY, Kostyuchenko VA, Shi J, Anand GS, Bond PJ, Crowe Jr JE, Lok SM

PLoS Pathog (2021) 17 pp. e1009331-e1009331 [ Pubmed: 33621239 DOI: doi:10.1371/journal.ppat.1009331 ]

EMD-2442
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3D View
Cryo-EM structure of Dengue virus serotype 1 complexed with Fab fragments of human antibody 1F4
Release date: Jan. 29, 2014
Resolution: 6.0 Å
EM Method: Single-particle
Fitted PDBs: 4c2i
Q-score: 0.093

Fibriansah G, Tan JL, de Alwis R, Smith SA, Ng T-S, Kostyuchenko VA, Ibarra KD, Harris E, de Silva A, Crowe JE, Lok S-M

EMBO Mol Med (2014) 6 pp. 358-371 [ Pubmed: 24421336 DOI: doi:10.1002/emmm.201303404 ]

EMD-2141
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3D View
6A Electron cryomicroscopy structure of immature Dengue virus serotype 1
Release date: June 5, 2013
Resolution: 6.0 Å
EM Method: Single-particle
Fitted PDBs: 4b03
Q-score: 0.064

Kostyuchenko VA, Zhang Q, Tan JL, Ng TS, Lok SM

J Virol (2013) 87 pp. 7700-7707 [ Pubmed: 23637416 DOI: doi:10.1128/JVI.00197-13 ]

EMD-2142
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3D View
4.5A Electron cryomicroscopy reconstruction of mature Dengue virus serotype 1
Release date: June 5, 2013
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 4cct
Q-score: 0.106

Kostyuchenko VA, Zhang Q, Tan JL, Ng TS, Lok SM

J Virol (2013) 87 pp. 7700-7707 [ Pubmed: 23637416 DOI: doi:10.1128/JVI.00197-13 ]

EMD-5268
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3D View
Three-dimensional structure of Dengue virus serotype 1 complexed with HMAb 14c10 Fab
Release date: June 27, 2012
Resolution: 7.0 Å
EM Method: Single-particle
Fitted PDBs: 3j05
Q-score: 0.153

Teoh EP, Kukkaro P, Teo EW, Lim AP, Tan TT, Yip A, Schul W, Aung M, Kostyuchenko VA, Leo YS, Chan SH, Smith KG, Chan AH, Zou G, Ooi EE, Kemeny DM, Tan GK, Ng JK, Ng ML, Alonso S, Fisher D, Shi PY, Hanson BJ, Lok SM, MacAry PA

Sci Transl Med (2012) 4 pp. 139ra83-139ra83 [ Pubmed: 22723463 DOI: doi:10.1126/scitranslmed.3003888 ]

Sort by: Download
Showing 1 - 6 of 6. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Protein [4]
  • Sample [4]
  • Virus [4]
  • Complex [2]

Organism

  • Dengue virus [6]
  • Homo sapiens [4]

EM Method

  • Single-particle [6]

Resolution

  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [3]
  • ≥ 16Å and < 20Å [2]

Model molecular weight

  • 5-10 MDa [1]
  • > 10 MDa [5]

Release Date

  • 2021 [2]
  • 2014 [1]
  • 2013 [2]
  • 2012 [1]

Author by name

  • Kostyuchenko VA [6]
  • Lok SM [5]
  • Tan JL [5]
  • Ng TS [4]
  • Fibriansah G [3]
  • Anand GS [2]
  • Bond PJ [2]
  • Chew VSY [2]
  • Crowe Jr Je [2]
  • Huber RG [2]
  • Lim EXY [2]
  • Lim XN [2]
  • Marzinek JK [2]
  • Shi J [2]
  • Tan LC [2]
  • Zhang Q [2]
  • Alonso S [1]
  • Aung M [1]
  • Chan AH [1]
  • Chan SH [1]
  • Crowe JE [1]
  • Fisher D [1]
  • Hanson B [1]
  • Hanson BJ [1]
  • Harris E [1]
  • Ibarra KD [1]
  • Kemeny DM [1]
  • Kukkaro P [1]
  • Leo S [1]
  • Leo YS [1]
  • Lim A [1]
  • Lim AP [1]
  • Lok S-M [1]
  • Macary PA [1]
  • Ng G [1]
  • Ng JK [1]
  • Ng ML [1]
  • Ng T-S [1]
  • Ooi EE [1]
  • Schul W [1]
  • Shi PY [1]
  • Smith KG [1]
  • Smith KGC [1]
  • Smith SA [1]
  • Tan GK [1]
  • Tan TT [1]
  • Teo EW [1]
  • Teoh EP [1]
  • Yip A [1]
  • Zou G [1]
  • De Alwis R [1]
  • De Silva A [1]

Author by ORCID

  • Kostyuchenko VA [6]
  • Lok SM [5]
  • Fibriansah G [3]
  • Huber RG [2]
  • Lim XN [2]
  • Chew VSY [2]
  • Anand GS [2]
  • Crowe Jr Je [2]
  • Ng TS [2]
  • Marzinek JK [2]
  • Bond PJ [2]
  • Shi J [2]
  • Harris E [1]
  • Zou G [1]
  • Lok S-M [1]
  • Ooi EE [1]
  • Macary PA [1]
  • Smith KG [1]

Journal

  • J VIROL [2]
  • PLOS PATHOG [2]
  • EMBO MOL MED [1]
  • SCI TRANSL MED [1]

Software

  • CHIMERA [3]
  • EMAN, MPSA [2]
  • MPSA [2]
  • GPU-ADAPTED, EMAN1 [1]
  • GPU-ADAPTED, EMAN1, EMAN2 [1]
  • RELION [1]

Microscope

  • FEI TITAN KRIOS [6]

Electron Source

  • FIELD EMISSION GUN [6]

Film or detector model

  • FEI FALCON II 4K X 4K [2]
  • GENERIC GATAN 4K X 4K [2]
  • FEI FALCON I 4K X 4K [1]
  • GENERIC GATAN [1]

External links

  • PDB [6]
  • AlphaFold DB [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]