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natural_source_ncbi_code:"11033"

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Current Database

  • EMDB [27]

Current status

  • REL [27]

Sample type

  • Complex [23]
  • Protein [6]
  • Ligand [5]
  • Virus [4]
  • Sample [2]

Organism

  • Semliki forest virus [27]
  • Homo sapiens [7]

EM Method

  • Single-particle [27]

Resolution

  • ≥ 3Å and < 4Å [11]
  • ≥ 4Å and < 5Å [5]
  • ≥ 5Å and < 6Å [5]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [2]

Model molecular weight

  • 250-500 kDa [6]
  • 2-5 MDa [1]

Release Date

  • 2025 [1]
  • 2024 [6]
  • 2023 [18]
  • 2003 [1]
  • 2002 [1]

Author by name

  • Cao D [18]
  • Cao Z [18]
  • Ma B [18]
  • Xiang Y [18]
  • Zhang X [18]
  • Liu S [5]
  • Gao FG [3]
  • Chai Y [2]
  • Fuller SD [2]
  • Gao GF [2]
  • Gowen B [2]
  • Li Y [2]
  • Mancini EJ [2]
  • Shi Y [2]
  • Song H [2]
  • Sun J [2]
  • Wang H [2]
  • Wang Y [2]
  • Zhao Z [2]
  • Zhao ZN [2]
  • Zhou J [2]
  • Abraham J [1]
  • Basu H [1]
  • Brusic V [1]
  • Clark LE [1]
  • Clark SA [1]
  • Clarke M [1]
  • Coscia A [1]
  • Fan X [1]
  • Ferlenghi I [1]
  • Garoff H [1]
  • Gowen BE [1]
  • He J [1]
  • Jia X [1]
  • Li S [1]
  • Li W [1]
  • Mann CJ [1]
  • Pan J [1]
  • Rutten T [1]
  • Sjoberg M [1]
  • Smith KN [1]
  • Varnum H [1]
  • Yang P [1]
  • Yu H [1]
  • Zhang Q [1]
  • De Haas F [1]

Author by ORCID

  • Xiang Y [18]
  • Mancini EJ [2]
  • Rutten T [1]
  • Basu H [1]
  • Varnum H [1]
  • Pan J [1]
  • Yang P [1]
  • Smith KN [1]
  • De Haas F [1]
  • Li W [1]
  • Sjoberg M [1]
  • Abraham J [1]
  • Clarke M [1]
  • Fan X [1]

Journal

  • CELL [18]
  • TO BE PUBLISHED [3]
  • HLIFE [2]
  • DIAN ZI XIAN WEI XUE BAO [1]
  • J MOL BIOL [1]
  • MOL CELL [1]
  • NAT COMMUN [1]

Software

  • EMBL [1]
  • EMBL-ICOS [1]
  • EMFIT CHENG ET AL 1995 [1]

Microscope

  • FEI TITAN KRIOS [15]
  • FEI TECNAI ARCTICA [8]
  • FEI/PHILIPS CM200FEG/ST [2]
  • FEI TALOS ARCTICA [1]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [27]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [17]
  • GATAN K3 BIOQUANTUM 6K X 4K [5]
  • KODAK SO-163 FILM [2]
  • DIRECT ELECTRON DE-16 4K X 4K [1]
  • FEI FALCON IV 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

External links

  • PDB [7]
  • PDBe-Kb [6]
  • Pfam [6]
  • UniProt [6]
  • AlphaFold DB [5]
  • ChEBI [5]
  • ChEMBL [5]
  • DrugBank [5]
  • Gene Ontology [5]
  • InterPro [5]
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Showing 1 - 10 of 27. Page 1 of 3
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EMD-62513
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3D View
Cryo-EM Structure of Mature Semliki Forest Virus
Release date: Oct. 22, 2025
Resolution: 3.73 Å
EM Method: Single-particle
Fitted PDBs: 9kqr
Q-score: 0.42

Jia X, Li S, Yu H, Zhang Q, He J

Dian Zi Xian Wei Xue Bao (2025) 44 pp. 1- [ DOI: doi:10.3969/j.issn.1000-6281.2025.01.03 ]

EMD-37980
Download Map
3D View
Cryo-EM structure of Semliki Forest virus in complex with its receptor VLDLR 2-fold
Release date: Nov. 27, 2024
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8x0k
Q-score: 0.436

Gao FG, Liu S

To Be Published

EMD-37981
Download Map
3D View
Cryo-EM structure of Semliki Forest virus in complex with its receptor VLDLR 3-fold
Release date: Nov. 27, 2024
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8x0l
Q-score: 0.455

Gao FG, Liu S

To Be Published

EMD-37982
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3D View
Cryo-EM structure of Semliki Forest virus in complex with its receptor VLDLR 5-fold
Release date: Nov. 27, 2024
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8x0m
Q-score: 0.405

Gao FG, Liu S

To Be Published

EMD-42054
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3D View
Structure of Semliki Forest virus VLP in complex with VLDLR LA2
Release date: Aug. 14, 2024
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8ua8

Yang P, Li W, Fan X, Pan J, Mann CJ, Varnum H, Clark LE, Clark SA, Coscia A, Basu H, Smith KN, Brusic V, Abraham J

Nat Commun (2024) 15 pp. 6548-6548 [ DOI: doi:10.1038/s41467-024-50887-9 Pubmed: 39095394 ]

EMD-37699
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3D View
Axis5 block of Semliki Forest virus VLP in complex with the receptor VLDLR-LA1-8
Release date: Jan. 31, 2024
Resolution: 3.5 Å
EM Method: Single-particle

Li Y, Zhao Z, Liu S, Wang H, Sun J, Chai Y, Zhou J, Wang Y, Shi Y, Song H, Gao GF

HLIFE (2023) 1 pp. 124-136 [ DOI: doi:10.1016/j.hlife.2023.11.001 ]

EMD-37700
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3D View
Axis2 block of Semliki Forest virus VLP in complex with the receptor VLDLR-LA1-8
Release date: Jan. 31, 2024
Resolution: 3.4 Å
EM Method: Single-particle

Li Y, Zhao Z, Liu S, Wang H, Sun J, Chai Y, Zhou J, Wang Y, Shi Y, Song H, Gao GF

HLIFE (2023) 1 pp. 124-136 [ DOI: doi:10.1016/j.hlife.2023.11.001 ]

EMD-35451
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3D View
Structure of Semliki Forest virus VLP in complex with the receptor VLDLR-LA3
Release date: April 12, 2023
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8ihp
Q-score: 0.556

Cao D, Ma B, Cao Z, Zhang X, Xiang Y

Cell (2023) 186 pp. 2208-2218.e15 [ Pubmed: 37098345 DOI: doi:10.1016/j.cell.2023.03.032 ]

EMD-35466
Download Map
3D View
Semliki Forest virus VLP in complex with the receptor VLDLR-LA3
Release date: April 12, 2023
Resolution: 4.1 Å
EM Method: Single-particle

Cao D, Ma B, Cao Z, Zhang X, Xiang Y

Cell (2023) 186 pp. 2208-2218.e15 [ Pubmed: 37098345 DOI: doi:10.1016/j.cell.2023.03.032 ]

EMD-35467
Download Map
3D View
Semliki Forest virus VLP in complex with the receptor VLDLR-LA3 at the 5-fold axis
Release date: April 12, 2023
Resolution: 3.0 Å
EM Method: Single-particle

Cao D, Ma B, Cao Z, Zhang X, Xiang Y

Cell (2023) 186 pp. 2208-2218.e15 [ Pubmed: 37098345 DOI: doi:10.1016/j.cell.2023.03.032 ]

Sort by: Download
Showing 1 - 10 of 27. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [27]

Current status

  • REL [27]

Sample type

  • Complex [23]
  • Protein [6]
  • Ligand [5]
  • Virus [4]
  • Sample [2]

Organism

  • Semliki forest virus [27]
  • Homo sapiens [7]

EM Method

  • Single-particle [27]

Resolution

  • ≥ 3Å and < 4Å [11]
  • ≥ 4Å and < 5Å [5]
  • ≥ 5Å and < 6Å [5]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [2]

Model molecular weight

  • 250-500 kDa [6]
  • 2-5 MDa [1]

Release Date

  • 2025 [1]
  • 2024 [6]
  • 2023 [18]
  • 2003 [1]
  • 2002 [1]

Author by name

  • Cao D [18]
  • Cao Z [18]
  • Ma B [18]
  • Xiang Y [18]
  • Zhang X [18]
  • Liu S [5]
  • Gao FG [3]
  • Chai Y [2]
  • Fuller SD [2]
  • Gao GF [2]
  • Gowen B [2]
  • Li Y [2]
  • Mancini EJ [2]
  • Shi Y [2]
  • Song H [2]
  • Sun J [2]
  • Wang H [2]
  • Wang Y [2]
  • Zhao Z [2]
  • Zhao ZN [2]
  • Zhou J [2]
  • Abraham J [1]
  • Basu H [1]
  • Brusic V [1]
  • Clark LE [1]
  • Clark SA [1]
  • Clarke M [1]
  • Coscia A [1]
  • Fan X [1]
  • Ferlenghi I [1]
  • Garoff H [1]
  • Gowen BE [1]
  • He J [1]
  • Jia X [1]
  • Li S [1]
  • Li W [1]
  • Mann CJ [1]
  • Pan J [1]
  • Rutten T [1]
  • Sjoberg M [1]
  • Smith KN [1]
  • Varnum H [1]
  • Yang P [1]
  • Yu H [1]
  • Zhang Q [1]
  • De Haas F [1]

Author by ORCID

  • Xiang Y [18]
  • Mancini EJ [2]
  • Rutten T [1]
  • Basu H [1]
  • Varnum H [1]
  • Pan J [1]
  • Yang P [1]
  • Smith KN [1]
  • De Haas F [1]
  • Li W [1]
  • Sjoberg M [1]
  • Abraham J [1]
  • Clarke M [1]
  • Fan X [1]

Journal

  • CELL [18]
  • TO BE PUBLISHED [3]
  • HLIFE [2]
  • DIAN ZI XIAN WEI XUE BAO [1]
  • J MOL BIOL [1]
  • MOL CELL [1]
  • NAT COMMUN [1]

Software

  • EMBL [1]
  • EMBL-ICOS [1]
  • EMFIT CHENG ET AL 1995 [1]

Microscope

  • FEI TITAN KRIOS [15]
  • FEI TECNAI ARCTICA [8]
  • FEI/PHILIPS CM200FEG/ST [2]
  • FEI TALOS ARCTICA [1]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [27]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [17]
  • GATAN K3 BIOQUANTUM 6K X 4K [5]
  • KODAK SO-163 FILM [2]
  • DIRECT ELECTRON DE-16 4K X 4K [1]
  • FEI FALCON IV 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

External links

  • PDB [7]
  • PDBe-Kb [6]
  • Pfam [6]
  • UniProt [6]
  • AlphaFold DB [5]
  • ChEBI [5]
  • ChEMBL [5]
  • DrugBank [5]
  • Gene Ontology [5]
  • InterPro [5]