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natural_source_ncbi_code:"10912"

Filter By

Current Database

  • EMDB [13]

Current status

  • REL [13]

Sample type

  • Protein [10]
  • Virus [8]
  • Complex [4]
  • Ligand [4]
  • Sample [3]

Organism

  • (no species) [13]
  • Rotavirus a [6]
  • Homo sapiens [1]

EM Method

  • Single-particle [13]

Resolution

  • ≥ 3Å and < 4Å [7]
  • ≥ 4Å and < 5Å [4]
  • ≥ 5Å and < 6Å [1]
  • ≥ 30Å [1]

Model molecular weight

  • 250-500 kDa [4]
  • 1-2 MDa [2]
  • > 10 MDa [3]

Release Date

  • 2024 [4]
  • 2023 [1]
  • 2022 [2]
  • 2021 [3]
  • 2012 [2]
  • 2009 [1]

Author by name

  • Harrison SC [5]
  • Asensio-cob D [4]
  • Gomez-blanco J [4]
  • Luque D [4]
  • Mata CP [4]
  • Perez-mata C [4]
  • Rodriguez JM [4]
  • Vargas J [4]
  • Acker J [3]
  • Bartnik K [3]
  • Borodavka A [3]
  • Bravo JPK [3]
  • Calabrese AN [3]
  • Colyer A [3]
  • Davidovich C [3]
  • Gail EH [3]
  • Grigorieff N [3]
  • Lamb DC [3]
  • Tuma R [3]
  • Venditti L [3]
  • Bessey T [2]
  • Brilot AF [2]
  • Campbell MG [2]
  • Carragher B [2]
  • Cheng A [2]
  • Greenberg HB [2]
  • Jenni S [2]
  • Jiang B [2]
  • Li Z [2]
  • Lyumkis D [2]
  • Moeller A [2]
  • Pan J [2]
  • Potter CS [2]
  • Salgado EN [2]
  • Schmidt AG [2]
  • Veesler D [2]
  • Wang Y [2]
  • Zongli L [2]
  • Aoki ST [1]
  • Bellamy AR [1]
  • Boyce M [1]
  • Chen JZ [1]
  • Dormitzer PR [1]
  • Hu Y [1]
  • Huang C [1]
  • Kim JS [1]
  • Kirkland AI [1]
  • Liberti E [1]
  • Nellist PD [1]
  • Pei X [1]
  • Sasaki T [1]
  • Settembre EC [1]
  • Stuart DI [1]
  • Wang P [1]
  • Zhang P [1]
  • Zhang X [1]
  • Zhou L [1]

Author by ORCID

  • Luque D [4]
  • Lamb DC [3]
  • Davidovich C [3]
  • Grigorieff N [3]
  • Colyer A [3]
  • Borodavka A [3]
  • Acker J [3]
  • Bartnik K [3]
  • Calabrese AN [3]
  • Harrison SC [2]
  • Brilot AF [2]
  • Pan J [2]
  • Carragher B [2]
  • Greenberg HB [2]
  • Bessey T [2]
  • Moeller A [2]
  • Campbell MG [2]
  • Liberti E [1]
  • Sasaki T [1]
  • Kirkland AI [1]
  • Aoki ST [1]
  • Nellist PD [1]
  • Zhou L [1]
  • Huang C [1]
  • Wang P [1]
  • Kim JS [1]
  • Boyce M [1]
  • Zhang P [1]

Journal

  • PLOS PATHOG [4]
  • PNAS [4]
  • J VIROL [2]
  • STRUCTURE [2]
  • BIORXIV [1]
  • NAT COMMUN [1]

Software

  • RELION [5]
  • CTFFIND [4]
  • CHIMERA [2]
  • FREALIGN, UPPSALA_PACKAGE [2]
  • FREALIGN [1]

Microscope

  • TFS KRIOS [4]
  • FEI TITAN KRIOS [3]
  • FEI POLARA 300 [2]
  • FEI TECNAI F20 [2]
  • FEI TECNAI F30 [1]
  • JEOL CRYO ARM 300 [1]

Electron Source

  • FIELD EMISSION GUN [13]

Film or detector model

  • FEI FALCON III 4K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [3]
  • DIRECT ELECTRON DE-12 4K X 3K [2]
  • FEI FALCON II 4K X 4K [2]
  • GATAN K2 BASE 4K X 4K [1]
  • KODAK SO-163 FILM [1]
  • OTHER [1]

External links

  • PDB [9]
  • UniProt [8]
  • Gene Ontology [6]
  • InterPro [6]
  • PDBe-Kb [6]
  • Pfam [6]
  • ChEBI [4]
  • ChEMBL [4]
  • DrugBank [4]
  • AlphaFold DB [1]
  • Complex Portal [1]
  • EMPIAR [1]
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Showing 1 - 10 of 13. Page 1 of 2
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EMD-16954
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3D View
SA11 Rotavirus Non-tripsinized Triple Layered Particle
Release date: Sept. 25, 2024
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8olb
Q-score: 0.059

Asensio-Cob D, Mata CP, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D

PLoS Pathog (2025) 21 pp. e1013063-e1013063 [ Pubmed: 40794814 DOI: doi:10.1371/journal.ppat.1013063 ]

EMD-16955
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SA11 Rotavirus Trypsinized Triple Layered Particle
Release date: Sept. 25, 2024
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 8olc
Q-score: 0.289

Asensio-Cob D, Mata CP, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D

PLoS Pathog (2025) 21 pp. e1013063-e1013063 [ Pubmed: 40794814 DOI: doi:10.1371/journal.ppat.1013063 ]

EMD-16956
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Cryo-EM reconstruction of VP4 assembly from SA11 Rotavirus Non-Tripsinized Triple Layered Particle
Release date: Sept. 25, 2024
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 8ole
Q-score: 0.117

Asensio-Cob D, Mata CP, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D

PLoS Pathog (2025) 21 pp. e1013063-e1013063 [ Pubmed: 40794814 DOI: doi:10.1371/journal.ppat.1013063 ]

EMD-18655
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Cryo-EM reconstruction of VP5 /VP8 assembly from SA11 Rotavirus Tripsinized Triple Layered Particle
Release date: Sept. 25, 2024
Resolution: 4.27 Å
EM Method: Single-particle
Fitted PDBs: 8qtz
Q-score: 0.326

Asensio-Cob D, Mata CP, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D

PLoS Pathog (2025) 21 pp. e1013063-e1013063 [ Pubmed: 40794814 DOI: doi:10.1371/journal.ppat.1013063 ]

EMD-35828
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Raw data
EMPIAR-11500
Cryo-EPty SPA at CSA of 1.03 mrad
Release date: June 14, 2023
Resolution: 37.2 Å
EM Method: Single-particle

Pei X, Zhou L, Huang C, Boyce M, Kim JS, Liberti E, Hu Y, Sasaki T, Nellist PD, Zhang P, Stuart DI, Kirkland AI, Wang P

Nat Commun (2023) 14 pp. 3027-3027 [ Pubmed: 37230988 DOI: doi:10.1038/s41467-023-38268-0 ]

EMD-26608
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Structure of the VP5 /VP8 assembly from the human rotavirus strain CDC-9 in complex with antibody 41 - Upright conformation
Release date: July 27, 2022
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ums
Q-score: 0.493

Jenni S, Li Z, Wang Y, Bessey T, Salgado EN, Schmidt AG, Greenberg HB, Jiang B, Harrison SC

J Virol (2022) 96 pp. e0062722-e0062722 [ Pubmed: 35924923 DOI: doi:10.1128/jvi.00627-22 ]

EMD-26609
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Structure of the VP5 /VP8 assembly from the human rotavirus strain CDC-9 - Reversed conformation
Release date: July 27, 2022
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7umt
Q-score: 0.52

Jenni S, Li Z, Wang Y, Bessey T, Salgado EN, Schmidt AG, Greenberg HB, Jiang B, Harrison SC

J Virol (2022) 96 pp. e0062722-e0062722 [ Pubmed: 35924923 DOI: doi:10.1128/jvi.00627-22 ]

EMD-13474
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CryoEM structure of Rotavirus NSP2
Release date: Sept. 29, 2021
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7pko
Q-score: 0.442

Bravo JPK, Bartnik K, Venditti L, Acker J, Gail EH, Colyer A, Davidovich C, Lamb DC, Tuma R, Calabrese AN, Borodavka A

PNAS (2021) 118 [ Pubmed: 34615715 DOI: doi:10.1073/pnas.2100198118 ]

EMD-13475
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NSP2 RNP Complex focused 3D class with substrate density
Release date: Sept. 29, 2021
Resolution: 3.4 Å
EM Method: Single-particle

Bravo JPK, Bartnik K, Venditti L, Acker J, Gail EH, Colyer A, Davidovich C, Lamb DC, Tuma R, Calabrese AN, Borodavka A

PNAS (2021) 118 [ Pubmed: 34615715 DOI: doi:10.1073/pnas.2100198118 ]

EMD-13476
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3D View
NSP2 RNP complex
Release date: Sept. 29, 2021
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7pkp
Q-score: 0.551

Bravo JPK, Bartnik K, Venditti L, Acker J, Gail EH, Colyer A, Davidovich C, Lamb DC, Tuma R, Calabrese AN, Borodavka A

PNAS (2021) 118 [ Pubmed: 34615715 DOI: doi:10.1073/pnas.2100198118 ]

Sort by: Download
Showing 1 - 10 of 13. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [13]

Current status

  • REL [13]

Sample type

  • Protein [10]
  • Virus [8]
  • Complex [4]
  • Ligand [4]
  • Sample [3]

Organism

  • (no species) [13]
  • Rotavirus a [6]
  • Homo sapiens [1]

EM Method

  • Single-particle [13]

Resolution

  • ≥ 3Å and < 4Å [7]
  • ≥ 4Å and < 5Å [4]
  • ≥ 5Å and < 6Å [1]
  • ≥ 30Å [1]

Model molecular weight

  • 250-500 kDa [4]
  • 1-2 MDa [2]
  • > 10 MDa [3]

Release Date

  • 2024 [4]
  • 2023 [1]
  • 2022 [2]
  • 2021 [3]
  • 2012 [2]
  • 2009 [1]

Author by name

  • Harrison SC [5]
  • Asensio-cob D [4]
  • Gomez-blanco J [4]
  • Luque D [4]
  • Mata CP [4]
  • Perez-mata C [4]
  • Rodriguez JM [4]
  • Vargas J [4]
  • Acker J [3]
  • Bartnik K [3]
  • Borodavka A [3]
  • Bravo JPK [3]
  • Calabrese AN [3]
  • Colyer A [3]
  • Davidovich C [3]
  • Gail EH [3]
  • Grigorieff N [3]
  • Lamb DC [3]
  • Tuma R [3]
  • Venditti L [3]
  • Bessey T [2]
  • Brilot AF [2]
  • Campbell MG [2]
  • Carragher B [2]
  • Cheng A [2]
  • Greenberg HB [2]
  • Jenni S [2]
  • Jiang B [2]
  • Li Z [2]
  • Lyumkis D [2]
  • Moeller A [2]
  • Pan J [2]
  • Potter CS [2]
  • Salgado EN [2]
  • Schmidt AG [2]
  • Veesler D [2]
  • Wang Y [2]
  • Zongli L [2]
  • Aoki ST [1]
  • Bellamy AR [1]
  • Boyce M [1]
  • Chen JZ [1]
  • Dormitzer PR [1]
  • Hu Y [1]
  • Huang C [1]
  • Kim JS [1]
  • Kirkland AI [1]
  • Liberti E [1]
  • Nellist PD [1]
  • Pei X [1]
  • Sasaki T [1]
  • Settembre EC [1]
  • Stuart DI [1]
  • Wang P [1]
  • Zhang P [1]
  • Zhang X [1]
  • Zhou L [1]

Author by ORCID

  • Luque D [4]
  • Lamb DC [3]
  • Davidovich C [3]
  • Grigorieff N [3]
  • Colyer A [3]
  • Borodavka A [3]
  • Acker J [3]
  • Bartnik K [3]
  • Calabrese AN [3]
  • Harrison SC [2]
  • Brilot AF [2]
  • Pan J [2]
  • Carragher B [2]
  • Greenberg HB [2]
  • Bessey T [2]
  • Moeller A [2]
  • Campbell MG [2]
  • Liberti E [1]
  • Sasaki T [1]
  • Kirkland AI [1]
  • Aoki ST [1]
  • Nellist PD [1]
  • Zhou L [1]
  • Huang C [1]
  • Wang P [1]
  • Kim JS [1]
  • Boyce M [1]
  • Zhang P [1]

Journal

  • PLOS PATHOG [4]
  • PNAS [4]
  • J VIROL [2]
  • STRUCTURE [2]
  • BIORXIV [1]
  • NAT COMMUN [1]

Software

  • RELION [5]
  • CTFFIND [4]
  • CHIMERA [2]
  • FREALIGN, UPPSALA_PACKAGE [2]
  • FREALIGN [1]

Microscope

  • TFS KRIOS [4]
  • FEI TITAN KRIOS [3]
  • FEI POLARA 300 [2]
  • FEI TECNAI F20 [2]
  • FEI TECNAI F30 [1]
  • JEOL CRYO ARM 300 [1]

Electron Source

  • FIELD EMISSION GUN [13]

Film or detector model

  • FEI FALCON III 4K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [3]
  • DIRECT ELECTRON DE-12 4K X 3K [2]
  • FEI FALCON II 4K X 4K [2]
  • GATAN K2 BASE 4K X 4K [1]
  • KODAK SO-163 FILM [1]
  • OTHER [1]

External links

  • PDB [9]
  • UniProt [8]
  • Gene Ontology [6]
  • InterPro [6]
  • PDBe-Kb [6]
  • Pfam [6]
  • ChEBI [4]
  • ChEMBL [4]
  • DrugBank [4]
  • AlphaFold DB [1]
  • Complex Portal [1]
  • EMPIAR [1]