Edit your search query here and hit Return to execute it:
natural_source_ncbi_code:"1085"

Filter By

Current Database

  • EMDB [10]

Current status

  • REL [10]

Sample type

  • Protein [10]
  • Complex [8]
  • Ligand [8]
  • Sample [2]

Organism

  • Rhodospirillum rubrum [10]
  • Synthetic construct [2]
  • Cereibacter sphaeroides [2]
  • Escherichia coli [2]
  • Escherichia coli [2]
  • Cereibacter sphaeroides [1]
  • Rhodospirillum rubrum [1]

EM Method

  • Single-particle [10]

Resolution

  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [1]
  • ≥ 8Å and < 12Å [2]
  • ≥ 12Å and < 16Å [2]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [4]
  • 500-1000 kDa [3]

Release Date

  • 2025 [1]
  • 2024 [1]
  • 2022 [2]
  • 2021 [2]
  • 2018 [2]
  • 2013 [2]

Author by name

  • Hall M [4]
  • Humbel BM [4]
  • Kanno R [4]
  • Kimura Y [4]
  • Madigan MT [4]
  • Mizoguchi A [4]
  • Tani K [4]
  • Wang-otomo ZY [4]
  • Yu LJ [4]
  • Kawamura S [3]
  • Kikuchi R [3]
  • Nagashima KVP [3]
  • Chen D-H [2]
  • Chiu W [2]
  • Clare DK [2]
  • Farr GW [2]
  • Horwich AL [2]
  • Lin Z [2]
  • Madan D [2]
  • Natesh R [2]
  • Rye HS [2]
  • Saibil HR [2]
  • Schroder GF [2]
  • Takahashi A [2]
  • Weaver J [2]
  • Ji XC [1]
  • Lago-maciel A [1]
  • Liu LN [1]
  • Liu ZK [1]
  • Nagashima VP [1]
  • Paczia N [1]
  • Pierik AJ [1]
  • Prinz S [1]
  • Rebelein JG [1]
  • Reif-trattmansdorff T [1]
  • Reif-trauttmansdorff T [1]
  • Schuller JM [1]
  • Soares J [1]
  • Wang P [1]
  • Zarzycki J [1]

Author by ORCID

  • Wang-otomo ZY [4]
  • Kanno R [4]
  • Kimura Y [4]
  • Tani K [4]
  • Yu LJ [3]
  • Natesh R [2]
  • Clare DK [2]
  • Weaver J [2]
  • Chiu W [2]
  • Rye HS [2]
  • Schroder GF [2]

Journal

  • NAT COMMUN [3]
  • CELL [2]
  • INT J BIOL MACROMOL [2]
  • TO BE PUBLISHED [2]
  • BIOCHEMISTRY [1]

Software

  • RELION [4]
  • CTFFIND3, LABEL AND SPIDER [2]
  • DIREX [2]
  • EMAN1 [2]
  • IMAGIC [2]
  • SPIDER [2]
  • CRYOSPARC [1]

Microscope

  • FEI TITAN KRIOS [3]
  • FEI TECNAI F20 [2]
  • TFS KRIOS [2]
  • FEI TALOS ARCTICA [1]
  • JEOL 3000SFF [1]
  • JEOL 3200FSC [1]

Electron Source

  • FIELD EMISSION GUN [10]

Film or detector model

  • FEI FALCON III 4K X 4K [4]
  • GENERIC GATAN [2]
  • KODAK SO-163 FILM [2]
  • GATAN K3 6K X 4K [1]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • PDB [8]
  • UniProt [8]
  • AlphaFold DB [6]
  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
  • PDBe-Kb [5]
  • Gene Ontology [4]
  • Pfam [4]
  • InterPro [3]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 10. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download
EMD-50553
Download Map
3D View
Methylthio-alkane reductase complex
Release date: Sept. 17, 2025
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 9fmg
Q-score: 0.585

Lago-Maciel A, Soares J, Zarzycki J, Prinz S, Reif-Trattmansdorff T, Schuller JM, Paczia N, Pierik AJ, Rebelein JG

To Be Published

EMD-62025
Download Map
3D View
Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex
Release date: Dec. 4, 2024
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 9k3q
Q-score: 0.534

Liu ZK, Wang P, Liu LN

To Be Published

EMD-32192
Download Map
3D View
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES DIMER
Release date: April 27, 2022
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 7vy2
Q-score: 0.534

Tani K, Kanno R, Kikuchi R, Kawamura S, Nagashima KVP, Hall M, Takahashi A, Yu LJ, Kimura Y, Madigan MT, Mizoguchi A, Humbel BM, Wang-Otomo ZY

Nat Commun (2022) 13 pp. 1904-1904 [ Pubmed: 35393413 DOI: doi:10.1038/s41467-022-29453-8 ]

EMD-32193
Download Map
3D View
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES LACKING PROTEIN-U
Release date: April 27, 2022
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 7vy3
Q-score: 0.628

Tani K, Kanno R, Kikuchi R, Kawamura S, Nagashima KVP, Hall M, Takahashi A, Yu LJ, Kimura Y, Madigan MT, Mizoguchi A, Humbel BM, Wang-Otomo ZY

Nat Commun (2022) 13 pp. 1904-1904 [ Pubmed: 35393413 DOI: doi:10.1038/s41467-022-29453-8 ]

EMD-31400
Download Map
3D View
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES MONOMER
Release date: Nov. 10, 2021
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 7f0l
Q-score: 0.597

Tani K, Nagashima KVP, Kanno R, Kawamura S, Kikuchi R, Hall M, Yu LJ, Kimura Y, Madigan MT, Mizoguchi A, Humbel BM, Wang-Otomo ZY

Nat Commun (2021) 12 pp. 6300-6300 [ Pubmed: 34728609 DOI: doi:10.1038/s41467-021-26561-9 ]

EMD-31258
Download Map
3D View
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOSPIRILLUM RUBRUM
Release date: Aug. 18, 2021
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 7eqd
Q-score: 0.577

Tani K, Kanno R, Ji XC, Hall M, Yu LJ, Kimura Y, Madigan MT, Mizoguchi A, Humbel BM, Wang-Otomo ZY

Biochemistry (2021) [ DOI: doi:10.1021/acs.biochem.1c00360 Pubmed: 34323477 ]

EMD-6725
Download Map
3D View
Folding intermediate of RuBisCO in complex with the GroEL chaperonin. Class1
Release date: June 13, 2018
Resolution: 12.2 Å
EM Method: Single-particle

Natesh R, Clare DK, Farr GW, Horwich AL, Saibil HR

Int J Biol Macromol (2018) 118 pp. 671-675 [ DOI: doi:10.1016/j.ijbiomac.2018.06.120 Pubmed: 29959019 ]

EMD-6726
Download Map
3D View
Folding intermediate of RuBisCO in complex with the GroEL chaperonin. Class2
Release date: June 13, 2018
Resolution: 11.0 Å
EM Method: Single-particle

Natesh R, Clare DK, Farr GW, Horwich AL, Saibil HR

Int J Biol Macromol (2018) 118 pp. 671-675 [ DOI: doi:10.1016/j.ijbiomac.2018.06.120 Pubmed: 29959019 ]

EMD-2326
Download Map
3D View
Visualizing GroEL/ES in the Act of Encapsulating a Non-Native Substrate Protein
Release date: March 13, 2013
Resolution: 9.2 Å
EM Method: Single-particle
Fitted PDBs: 3zq0
Q-score: 0.114

Chen D-H, Madan D, Weaver J, Lin Z, Schroder GF, Chiu W, Rye HS

Cell (2013) 153 pp. 1354-1365 [ DOI: doi:10.1016/j.cell.2013.04.052 Pubmed: 23746846 ]

EMD-2327
Download Map
3D View
Visualizing GroEL/ES in the Act of Encapsulating a Non-Native Substrate Protein
Release date: March 13, 2013
Resolution: 15.9 Å
EM Method: Single-particle
Fitted PDBs: 3zq1
Q-score: 0.067

Chen D-H, Madan D, Weaver J, Lin Z, Schroder GF, Chiu W, Rye HS

Cell (2013) 153 pp. 1354-1365 [ DOI: doi:10.1016/j.cell.2013.04.052 Pubmed: 23746846 ]

Sort by: Download
Showing 1 - 10 of 10. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [10]

Current status

  • REL [10]

Sample type

  • Protein [10]
  • Complex [8]
  • Ligand [8]
  • Sample [2]

Organism

  • Rhodospirillum rubrum [10]
  • Synthetic construct [2]
  • Cereibacter sphaeroides [2]
  • Escherichia coli [2]
  • Escherichia coli [2]
  • Cereibacter sphaeroides [1]
  • Rhodospirillum rubrum [1]

EM Method

  • Single-particle [10]

Resolution

  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [1]
  • ≥ 8Å and < 12Å [2]
  • ≥ 12Å and < 16Å [2]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [4]
  • 500-1000 kDa [3]

Release Date

  • 2025 [1]
  • 2024 [1]
  • 2022 [2]
  • 2021 [2]
  • 2018 [2]
  • 2013 [2]

Author by name

  • Hall M [4]
  • Humbel BM [4]
  • Kanno R [4]
  • Kimura Y [4]
  • Madigan MT [4]
  • Mizoguchi A [4]
  • Tani K [4]
  • Wang-otomo ZY [4]
  • Yu LJ [4]
  • Kawamura S [3]
  • Kikuchi R [3]
  • Nagashima KVP [3]
  • Chen D-H [2]
  • Chiu W [2]
  • Clare DK [2]
  • Farr GW [2]
  • Horwich AL [2]
  • Lin Z [2]
  • Madan D [2]
  • Natesh R [2]
  • Rye HS [2]
  • Saibil HR [2]
  • Schroder GF [2]
  • Takahashi A [2]
  • Weaver J [2]
  • Ji XC [1]
  • Lago-maciel A [1]
  • Liu LN [1]
  • Liu ZK [1]
  • Nagashima VP [1]
  • Paczia N [1]
  • Pierik AJ [1]
  • Prinz S [1]
  • Rebelein JG [1]
  • Reif-trattmansdorff T [1]
  • Reif-trauttmansdorff T [1]
  • Schuller JM [1]
  • Soares J [1]
  • Wang P [1]
  • Zarzycki J [1]

Author by ORCID

  • Wang-otomo ZY [4]
  • Kanno R [4]
  • Kimura Y [4]
  • Tani K [4]
  • Yu LJ [3]
  • Natesh R [2]
  • Clare DK [2]
  • Weaver J [2]
  • Chiu W [2]
  • Rye HS [2]
  • Schroder GF [2]

Journal

  • NAT COMMUN [3]
  • CELL [2]
  • INT J BIOL MACROMOL [2]
  • TO BE PUBLISHED [2]
  • BIOCHEMISTRY [1]

Software

  • RELION [4]
  • CTFFIND3, LABEL AND SPIDER [2]
  • DIREX [2]
  • EMAN1 [2]
  • IMAGIC [2]
  • SPIDER [2]
  • CRYOSPARC [1]

Microscope

  • FEI TITAN KRIOS [3]
  • FEI TECNAI F20 [2]
  • TFS KRIOS [2]
  • FEI TALOS ARCTICA [1]
  • JEOL 3000SFF [1]
  • JEOL 3200FSC [1]

Electron Source

  • FIELD EMISSION GUN [10]

Film or detector model

  • FEI FALCON III 4K X 4K [4]
  • GENERIC GATAN [2]
  • KODAK SO-163 FILM [2]
  • GATAN K3 6K X 4K [1]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • PDB [8]
  • UniProt [8]
  • AlphaFold DB [6]
  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
  • PDBe-Kb [5]
  • Gene Ontology [4]
  • Pfam [4]
  • InterPro [3]
  • SCOP2 [1]