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Filter By

Current Database

  • EMDB [117]

Current status

  • REL [117]

Sample type

  • Protein [70]
  • Complex [65]
  • Sample [31]
  • Virus [30]
  • DNA [23]
  • Ligand [17]
  • RNA [5]
  • Cellular component [2]
  • Other [1]

Organism

  • Escherichia virus t7 [117]
  • Escherichia coli [22]
  • Escherichia coli [3]
  • Escherichia coli [2]
  • Escherichia coli [1]

EM Method

  • Single-particle [113]
  • Subtomogram averaging [4]

Resolution

  • ≥ 2Å and < 3Å [8]
  • ≥ 3Å and < 4Å [43]
  • ≥ 4Å and < 5Å [17]
  • ≥ 5Å and < 6Å [4]
  • ≥ 6Å and < 8Å [7]
  • ≥ 8Å and < 12Å [11]
  • ≥ 12Å and < 16Å [6]
  • ≥ 16Å and < 20Å [9]
  • ≥ 20Å and < 30Å [8]
  • ≥ 30Å [4]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [6]
  • 250-500 kDa [22]
  • 500-1000 kDa [9]
  • 1-2 MDa [6]
  • 2-5 MDa [2]
  • > 10 MDa [4]

Release Date

  • 2025 [7]
  • 2024 [8]
  • 2023 [16]
  • 2022 [4]
  • 2021 [23]
  • 2020 [4]
  • 2019 [23]
  • 2017 [1]
  • 2015 [1]
  • 2014 [4]
  • 2013 [17]
  • 2012 [1]
  • 2010 [1]
  • 2009 [1]
  • 2007 [2]
  • 2006 [4]

Author by name

  • Chen W [25]
  • Chen WY [25]
  • Cheng L [25]
  • Liu H [25]
  • Song J [25]
  • Wang L [25]
  • Xiao H [25]
  • Liu J [24]
  • Molineux IJ [24]
  • Gao Y [22]
  • Cui Y [20]
  • Fox T [20]
  • Lin S [20]
  • Liu Z [20]
  • Wang C [20]
  • Wang H [20]
  • Yang W [20]
  • Zhou ZH [20]
  • De Val N [20]
  • Han Z [19]
  • Li X [19]
  • Wang X [19]
  • Yang F [19]
  • Carrascosa JL [18]
  • Liu HR [14]
  • Valpuesta JM [13]
  • Guo F [12]
  • Jiang W [12]
  • Martin-benito J [12]
  • Ren Y [12]
  • Serwer P [12]
  • Vago F [12]
  • Wright ET [12]
  • Wu W [12]
  • Song S [11]
  • Cuervo A [10]
  • Val N [10]
  • Park T [9]
  • Caston JR [8]
  • Pulido-cid M [8]
  • Tan Z [8]
  • Wright E [8]
  • Agirrezabala X [6]
  • Pang H [6]
  • Zheng J [6]
  • Perez-ruiz M [5]
  • Chiu W [4]
  • Dryden DT [4]
  • Fang PA [4]
  • Garcia-doval C [4]
  • Gonzalez-garcia VA [4]
  • Hu B [4]
  • Jakata J [4]
  • Margolin W [4]
  • Miranda R [4]
  • Wang CY [4]
  • Zhang C [4]
  • Zhang Q [4]
  • Zhang X [4]
  • Van Raaij Mj [4]
  • Arranz R [3]
  • Borgnia MJ [3]
  • Chagoyen M [3]
  • Coll M [3]
  • Conesa JJ [3]
  • Dillard LB [3]
  • Dillingham MS [3]
  • Fabrega-ferrer M [3]
  • Fernandez FJ [3]
  • Hsu AL [3]
  • Klemm BP [3]
  • Krahn JM [3]
  • London RE [3]
  • Machon C [3]
  • Mueller GA [3]
  • Perez-luque R [3]
  • Pous J [3]
  • Schaaper RM [3]
  • Singh D [3]
  • Smith CE [3]
  • Vega MC [3]
  • Wilkinson OJ [3]
  • Buck M [2]
  • Bujnicki JM [2]
  • Burmann F [2]
  • Cao D [2]
  • Clifton B [2]
  • Cooper LP [2]
  • Dauden MI [2]
  • Dillingham M [2]
  • Dryden DTF [2]
  • Feng H [2]
  • Gao P [2]
  • Jovanovic M [2]
  • Kennaway CK [2]
  • Kimanius D [2]
  • Koekemoer S [2]
  • Kotta-loizou I [2]
  • Liu S [2]
  • Liu X [2]

Author by ORCID

  • Xiao H [25]
  • Lin S [20]
  • Yang W [20]
  • Gao Y [20]
  • Wang H [20]
  • Zhou ZH [20]
  • Cui Y [20]
  • Fox T [20]
  • Liu H [14]
  • Cheng L [14]
  • Chen W [14]
  • Valpuesta JM [13]
  • Jiang W [12]
  • Martin-benito J [11]
  • Cuervo A [9]
  • Liu Z [8]
  • Song J [8]
  • Tan Z [8]
  • Han Z [8]
  • Caston JR [8]
  • Zheng J [6]
  • Perez-ruiz M [5]
  • Garcia-doval C [4]
  • Liu Z [4]
  • Chiu W [4]
  • Arranz R [3]
  • Machon C [3]
  • Chagoyen M [3]
  • Mueller GA [3]
  • Borgnia MJ [3]
  • Fabrega-ferrer M [3]
  • Pous J [3]
  • Dillingham MS [3]
  • Krahn JM [3]
  • Van Raaij Mj [3]
  • Fernandez FJ [3]
  • Vega MC [3]
  • Perez-luque R [3]
  • Schaaper RM [3]
  • Hsu AL [3]
  • Klemm BP [3]
  • Coll M [3]
  • Clifton B [2]
  • Obarska-kosinska A [2]
  • Zhang X [2]
  • Zhang X [2]
  • Lowe J [2]
  • Gao P [2]
  • Pulido-cid M [2]
  • Jovanovic M [2]
  • Buck M [2]
  • Yan XX [2]
  • Dauden MI [2]
  • Kotta-loizou I [2]
  • Ye F [2]
  • Wilkinson M [1]
  • Gonzalez JM [1]
  • Tuszynska I [1]
  • Corbett KD [1]
  • Adams MC [1]
  • Saecker RM [1]
  • Nicholson W [1]
  • Swanson NA [1]
  • Malone B [1]
  • Li F [1]
  • Valle M [1]
  • Sun L [1]
  • Pogliano J [1]
  • Drobiazko A [1]
  • Ghilarov D [1]
  • Carrascosa JL [1]
  • Severinov K [1]
  • Luque D [1]
  • Maxwell KL [1]
  • Scheres SH [1]
  • Wigley DB [1]
  • Roberts GA [1]
  • Martin-benito J [1]
  • Leptihn S [1]
  • Sliz P [1]
  • Blower TR [1]
  • Potrzebowski W [1]
  • Eng ET [1]
  • Darst SA [1]
  • Cuervo A [1]
  • Van Raaij Mj [1]
  • Isaev A [1]
  • Moeller A [1]
  • Deep A [1]
  • Gomez-puertas P [1]
  • Niederweis M [1]
  • Wilkinson OJ [1]
  • Liang Q [1]
  • Skutel M [1]
  • Trofimova A [1]
  • Yatselenko D [1]
  • Kotovskaya O [1]

Journal

  • PNAS [27]
  • SCIENCE [24]
  • TO BE PUBLISHED [20]
  • PROTEIN CELL [11]
  • J BIOL CHEM [7]
  • J VIROL [6]
  • EMBO J [4]
  • NAT COMMUN [4]
  • ELIFE [3]
  • CELL [2]
  • NAT MICROBIOL [2]
  • NUCLEIC ACIDS RES [2]
  • GENES DEV [1]
  • J MOL BIOL [1]
  • MOL CELL [1]
  • NATURE [1]
  • STRUCTURE [1]

Software

  • RELION [29]
  • JSPR, EMAN2, EMAN [8]
  • SPIDER [6]
  • IMOD, RAPTOR, PROTOMO [4]
  • JSPR, EMAN, EMAN2 [4]
  • XMIPP, SPIDER, EMAN [3]
  • CHIMERA [2]
  • CHIMERA, SITUS [2]
  • EMAN, IMAGIC [2]
  • XMIPP, EMAN, SPIDER [2]
  • CRYOSPARC [1]
  • CTFFIND [1]
  • SITUS [1]
  • XMIPP [1]
  • XMIPP, EMAN [1]

Microscope

  • FEI TITAN KRIOS [64]
  • FEI TECNAI ARCTICA [19]
  • FEI TECNAI F20 [12]
  • TFS KRIOS [9]
  • FEI TALOS ARCTICA [5]
  • FEI POLARA 300 [4]
  • FEI TECNAI 20 [1]
  • JEOL 1200EX [1]
  • JEOL 1200EXII [1]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [114]
  • LAB6 [1]
  • OTHER [1]
  • TUNGSTEN HAIRPIN [1]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [30]
  • GATAN K3 6K X 4K [24]
  • KODAK SO-163 FILM [22]
  • FEI FALCON II 4K X 4K [16]
  • GATAN K3 BIOQUANTUM 6K X 4K [7]
  • FEI FALCON III 4K X 4K [5]
  • FEI EAGLE 4K X 4K [4]
  • GENERIC TVIPS 4K X 4K [4]
  • FEI FALCON IV 4K X 4K [2]
  • GATAN K2 4K X 4K [1]
  • GATAN K2 QUANTUM 4K X 4K [1]
  • TVIPS TEMCAM-F416 4K X 4K [1]

External links

  • PDBe-Kb [59]
  • UniProt [59]
  • PDB [52]
  • Gene Ontology [38]
  • InterPro [35]
  • Pfam [34]
  • ChEBI [17]
  • DrugBank [17]
  • ChEMBL [16]
  • AlphaFold DB [14]
  • Complex Portal [5]
  • CATH [3]
  • EMPIAR [1]
Sort by: Download
Showing 1 - 10 of 117. Page 1 of 12
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EMD-46662
Download Map
3D View
Cryo-EM structure of the inner core associated with portal in the phage mutant lacking gp6.7
Release date: Sept. 3, 2025
Resolution: 4.0 Å
EM Method: Single-particle

Wang CY, Liu J

To Be Published

EMD-46664
Download Map
3D View
portal structure in the phage mutant lacking gp6.7
Release date: Sept. 3, 2025
Resolution: 3.7 Å
EM Method: Single-particle

Wang CY, Liu J

To Be Published

EMD-46665
Download Map
3D View
Incomplete inner core structure formed in the phage mutant lacking gp6.7.
Release date: Sept. 3, 2025
Resolution: 4.5 Å
EM Method: Single-particle

Wang CY, Liu J

To Be Published

EMD-44543
Download Map
3D View
The structure of the inner core associated with the portal in the mature virion of bacteriophage T7.
Release date: April 23, 2025
Resolution: 3.3 Å
EM Method: Single-particle

Wang CY, Liu J

To Be Published

EMD-51447
Download Map
3D View
MukEF in complex with the phage protein gp5.9
Release date: March 26, 2025
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 9gmb
Q-score: 0.308

Burmann F, Clifton B, Koekemoer S, Wilkinson OJ, Kimanius D, Dillingham MS, Lowe J

Cell (2025) 188 pp. 2465- [ Pubmed: 40168993 DOI: doi:10.1016/j.cell.2025.02.032 ]

EMD-51448
Download Map
3D View
MukEF in complex with the phage protein gp5.9 focus
Release date: March 26, 2025
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 9gmd
Q-score: 0.369

Burmann F, Clifton B, Koekemoer S, Wilkinson OJ, Kimanius D, Dillingham MS, Lowe J

Cell (2025) 188 pp. 2465- [ Pubmed: 40168993 DOI: doi:10.1016/j.cell.2025.02.032 ]

EMD-50032
Composite map
Download Map
3D View
Cryo-EM structure of the E. coli BrxX methyltransferase in complex with Ocr
Release date: March 5, 2025
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 9ex7
Q-score: 0.432

Drobiazko A, Adams MC, Skutel M, Potekhina K, Kotovskaya O, Trofimova A, Matlashov M, Yatselenko D, Maxwell KL, Blower TR, Severinov K, Ghilarov D, Isaev A

Nat Commun (2025) 16 pp. 1825-1825 [ DOI: doi:10.1038/s41467-025-57006-2 Pubmed: 39979294 ]

EMD-60037
Download Map
3D View
Cryo-EM structure of the E. coli BrxX methyltransferase complexed with Ocr
Release date: Dec. 11, 2024
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 8zek
Q-score: 0.32

Li S, Xu T, Meng X, Yan Y, Zhou Y, Duan L, Tang Y, Zhu L, Sun L

Nucleic Acids Res (2024) 52 pp. 8580-8594 [ Pubmed: 38989624 DOI: doi:10.1093/nar/gkae608 ]

EMD-61906
Download Map
3D View
Asymmetry reconstruction of mature phage T7
Release date: Dec. 11, 2024
Resolution: 7.0 Å
EM Method: Single-particle

Zheng J, Xiao H, Pang H, Wang L, Song J, Chen W, Cheng L, Liu H

J Virol (2025) 99 pp. e0124924-e0124924 [ Pubmed: 39704524 DOI: doi:10.1128/jvi.01249-24 ]

EMD-61907
Download Map
3D View
asymmetric recosntructon of DNA-ejected T7
Release date: Dec. 11, 2024
Resolution: 8.7 Å
EM Method: Single-particle

Zheng J, Xiao H, Pang H, Wang L, Song J, Chen W, Cheng L, Liu H

J Virol (2025) 99 pp. e0124924-e0124924 [ Pubmed: 39704524 DOI: doi:10.1128/jvi.01249-24 ]

Sort by: Download
Showing 1 - 10 of 117. Page 1 of 12
Display:
Statistics
×

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Preview first 10
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Filter By

Current Database

  • EMDB [117]

Current status

  • REL [117]

Sample type

  • Protein [70]
  • Complex [65]
  • Sample [31]
  • Virus [30]
  • DNA [23]
  • Ligand [17]
  • RNA [5]
  • Cellular component [2]
  • Other [1]

Organism

  • Escherichia virus t7 [117]
  • Escherichia coli [22]
  • Escherichia coli [3]
  • Escherichia coli [2]
  • Escherichia coli [1]

EM Method

  • Single-particle [113]
  • Subtomogram averaging [4]

Resolution

  • ≥ 2Å and < 3Å [8]
  • ≥ 3Å and < 4Å [43]
  • ≥ 4Å and < 5Å [17]
  • ≥ 5Å and < 6Å [4]
  • ≥ 6Å and < 8Å [7]
  • ≥ 8Å and < 12Å [11]
  • ≥ 12Å and < 16Å [6]
  • ≥ 16Å and < 20Å [9]
  • ≥ 20Å and < 30Å [8]
  • ≥ 30Å [4]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [6]
  • 250-500 kDa [22]
  • 500-1000 kDa [9]
  • 1-2 MDa [6]
  • 2-5 MDa [2]
  • > 10 MDa [4]

Release Date

  • 2025 [7]
  • 2024 [8]
  • 2023 [16]
  • 2022 [4]
  • 2021 [23]
  • 2020 [4]
  • 2019 [23]
  • 2017 [1]
  • 2015 [1]
  • 2014 [4]
  • 2013 [17]
  • 2012 [1]
  • 2010 [1]
  • 2009 [1]
  • 2007 [2]
  • 2006 [4]

Author by name

  • Chen W [25]
  • Chen WY [25]
  • Cheng L [25]
  • Liu H [25]
  • Song J [25]
  • Wang L [25]
  • Xiao H [25]
  • Liu J [24]
  • Molineux IJ [24]
  • Gao Y [22]
  • Cui Y [20]
  • Fox T [20]
  • Lin S [20]
  • Liu Z [20]
  • Wang C [20]
  • Wang H [20]
  • Yang W [20]
  • Zhou ZH [20]
  • De Val N [20]
  • Han Z [19]
  • Li X [19]
  • Wang X [19]
  • Yang F [19]
  • Carrascosa JL [18]
  • Liu HR [14]
  • Valpuesta JM [13]
  • Guo F [12]
  • Jiang W [12]
  • Martin-benito J [12]
  • Ren Y [12]
  • Serwer P [12]
  • Vago F [12]
  • Wright ET [12]
  • Wu W [12]
  • Song S [11]
  • Cuervo A [10]
  • Val N [10]
  • Park T [9]
  • Caston JR [8]
  • Pulido-cid M [8]
  • Tan Z [8]
  • Wright E [8]
  • Agirrezabala X [6]
  • Pang H [6]
  • Zheng J [6]
  • Perez-ruiz M [5]
  • Chiu W [4]
  • Dryden DT [4]
  • Fang PA [4]
  • Garcia-doval C [4]
  • Gonzalez-garcia VA [4]
  • Hu B [4]
  • Jakata J [4]
  • Margolin W [4]
  • Miranda R [4]
  • Wang CY [4]
  • Zhang C [4]
  • Zhang Q [4]
  • Zhang X [4]
  • Van Raaij Mj [4]
  • Arranz R [3]
  • Borgnia MJ [3]
  • Chagoyen M [3]
  • Coll M [3]
  • Conesa JJ [3]
  • Dillard LB [3]
  • Dillingham MS [3]
  • Fabrega-ferrer M [3]
  • Fernandez FJ [3]
  • Hsu AL [3]
  • Klemm BP [3]
  • Krahn JM [3]
  • London RE [3]
  • Machon C [3]
  • Mueller GA [3]
  • Perez-luque R [3]
  • Pous J [3]
  • Schaaper RM [3]
  • Singh D [3]
  • Smith CE [3]
  • Vega MC [3]
  • Wilkinson OJ [3]
  • Buck M [2]
  • Bujnicki JM [2]
  • Burmann F [2]
  • Cao D [2]
  • Clifton B [2]
  • Cooper LP [2]
  • Dauden MI [2]
  • Dillingham M [2]
  • Dryden DTF [2]
  • Feng H [2]
  • Gao P [2]
  • Jovanovic M [2]
  • Kennaway CK [2]
  • Kimanius D [2]
  • Koekemoer S [2]
  • Kotta-loizou I [2]
  • Liu S [2]
  • Liu X [2]

Author by ORCID

  • Xiao H [25]
  • Lin S [20]
  • Yang W [20]
  • Gao Y [20]
  • Wang H [20]
  • Zhou ZH [20]
  • Cui Y [20]
  • Fox T [20]
  • Liu H [14]
  • Cheng L [14]
  • Chen W [14]
  • Valpuesta JM [13]
  • Jiang W [12]
  • Martin-benito J [11]
  • Cuervo A [9]
  • Liu Z [8]
  • Song J [8]
  • Tan Z [8]
  • Han Z [8]
  • Caston JR [8]
  • Zheng J [6]
  • Perez-ruiz M [5]
  • Garcia-doval C [4]
  • Liu Z [4]
  • Chiu W [4]
  • Arranz R [3]
  • Machon C [3]
  • Chagoyen M [3]
  • Mueller GA [3]
  • Borgnia MJ [3]
  • Fabrega-ferrer M [3]
  • Pous J [3]
  • Dillingham MS [3]
  • Krahn JM [3]
  • Van Raaij Mj [3]
  • Fernandez FJ [3]
  • Vega MC [3]
  • Perez-luque R [3]
  • Schaaper RM [3]
  • Hsu AL [3]
  • Klemm BP [3]
  • Coll M [3]
  • Clifton B [2]
  • Obarska-kosinska A [2]
  • Zhang X [2]
  • Zhang X [2]
  • Lowe J [2]
  • Gao P [2]
  • Pulido-cid M [2]
  • Jovanovic M [2]
  • Buck M [2]
  • Yan XX [2]
  • Dauden MI [2]
  • Kotta-loizou I [2]
  • Ye F [2]
  • Wilkinson M [1]
  • Gonzalez JM [1]
  • Tuszynska I [1]
  • Corbett KD [1]
  • Adams MC [1]
  • Saecker RM [1]
  • Nicholson W [1]
  • Swanson NA [1]
  • Malone B [1]
  • Li F [1]
  • Valle M [1]
  • Sun L [1]
  • Pogliano J [1]
  • Drobiazko A [1]
  • Ghilarov D [1]
  • Carrascosa JL [1]
  • Severinov K [1]
  • Luque D [1]
  • Maxwell KL [1]
  • Scheres SH [1]
  • Wigley DB [1]
  • Roberts GA [1]
  • Martin-benito J [1]
  • Leptihn S [1]
  • Sliz P [1]
  • Blower TR [1]
  • Potrzebowski W [1]
  • Eng ET [1]
  • Darst SA [1]
  • Cuervo A [1]
  • Van Raaij Mj [1]
  • Isaev A [1]
  • Moeller A [1]
  • Deep A [1]
  • Gomez-puertas P [1]
  • Niederweis M [1]
  • Wilkinson OJ [1]
  • Liang Q [1]
  • Skutel M [1]
  • Trofimova A [1]
  • Yatselenko D [1]
  • Kotovskaya O [1]

Journal

  • PNAS [27]
  • SCIENCE [24]
  • TO BE PUBLISHED [20]
  • PROTEIN CELL [11]
  • J BIOL CHEM [7]
  • J VIROL [6]
  • EMBO J [4]
  • NAT COMMUN [4]
  • ELIFE [3]
  • CELL [2]
  • NAT MICROBIOL [2]
  • NUCLEIC ACIDS RES [2]
  • GENES DEV [1]
  • J MOL BIOL [1]
  • MOL CELL [1]
  • NATURE [1]
  • STRUCTURE [1]

Software

  • RELION [29]
  • JSPR, EMAN2, EMAN [8]
  • SPIDER [6]
  • IMOD, RAPTOR, PROTOMO [4]
  • JSPR, EMAN, EMAN2 [4]
  • XMIPP, SPIDER, EMAN [3]
  • CHIMERA [2]
  • CHIMERA, SITUS [2]
  • EMAN, IMAGIC [2]
  • XMIPP, EMAN, SPIDER [2]
  • CRYOSPARC [1]
  • CTFFIND [1]
  • SITUS [1]
  • XMIPP [1]
  • XMIPP, EMAN [1]

Microscope

  • FEI TITAN KRIOS [64]
  • FEI TECNAI ARCTICA [19]
  • FEI TECNAI F20 [12]
  • TFS KRIOS [9]
  • FEI TALOS ARCTICA [5]
  • FEI POLARA 300 [4]
  • FEI TECNAI 20 [1]
  • JEOL 1200EX [1]
  • JEOL 1200EXII [1]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [114]
  • LAB6 [1]
  • OTHER [1]
  • TUNGSTEN HAIRPIN [1]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [30]
  • GATAN K3 6K X 4K [24]
  • KODAK SO-163 FILM [22]
  • FEI FALCON II 4K X 4K [16]
  • GATAN K3 BIOQUANTUM 6K X 4K [7]
  • FEI FALCON III 4K X 4K [5]
  • FEI EAGLE 4K X 4K [4]
  • GENERIC TVIPS 4K X 4K [4]
  • FEI FALCON IV 4K X 4K [2]
  • GATAN K2 4K X 4K [1]
  • GATAN K2 QUANTUM 4K X 4K [1]
  • TVIPS TEMCAM-F416 4K X 4K [1]

External links

  • PDBe-Kb [59]
  • UniProt [59]
  • PDB [52]
  • Gene Ontology [38]
  • InterPro [35]
  • Pfam [34]
  • ChEBI [17]
  • DrugBank [17]
  • ChEMBL [16]
  • AlphaFold DB [14]
  • Complex Portal [5]
  • CATH [3]
  • EMPIAR [1]