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natural_source_ncbi_code:"1061"

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Current Database

  • EMDB [15]

Current status

  • REL [15]

Sample type

  • Protein [15]
  • Complex [10]
  • Ligand [4]
  • Sample [3]
  • Virus [2]

Organism

  • Rhodobacter capsulatus [15]
  • 3144506 [2]

EM Method

  • Single-particle [14]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [6]
  • ≥ 4Å and < 5Å [3]
  • ≥ 6Å and < 8Å [1]
  • ≥ 12Å and < 16Å [2]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 250-500 kDa [7]
  • 500-1000 kDa [1]
  • 1-2 MDa [1]
  • 2-5 MDa [1]
  • 5-10 MDa [1]

Release Date

  • 2024 [2]
  • 2023 [2]
  • 2020 [8]
  • 2010 [3]

Author by name

  • Bardy P [9]
  • Fuzik T [7]
  • Hrebik D [7]
  • Pantucek R [7]
  • Plevka P [7]
  • Thomas Beatty J [7]
  • Beatty JT [5]
  • Al-karadaghi S [3]
  • Berglund L [3]
  • Elmlund D [3]
  • Elmlund H [3]
  • Emanuelsson C [3]
  • Hansson M [3]
  • Hebert H [3]
  • Lindahl M [3]
  • Lundqvist J [3]
  • Peterson-wulff R [3]
  • Willows R [3]
  • Willows RD [3]
  • Wulff RP [3]
  • Alim NTB [2]
  • Antson AA [2]
  • Blaza JN [2]
  • Botka T [2]
  • Byrom L [2]
  • Chechik M [2]
  • Fogg PCM [2]
  • Hart SJ [2]
  • Jenkins HT [2]
  • Kirchberger PC [2]
  • Konig HC [2]
  • Macdonald CIW [2]
  • Nicholas TR [2]
  • Traore DAK [2]
  • Turkenburg JP [2]
  • Bracun L [1]
  • Burger J [1]
  • Christianson BM [1]
  • Duffus BR [1]
  • Hall M [1]
  • Hartmann T [1]
  • Humbel BM [1]
  • Ji X-C [1]
  • Ji XC [1]
  • Kanno R [1]
  • Kimura Y [1]
  • Kobayashi Y [1]
  • Leimkuhler S [1]
  • Liu LN [1]
  • Madigan MT [1]
  • Mielke T [1]
  • Mittelstadt G [1]
  • Mizoguchi A [1]
  • Nagashima KVP [1]
  • Radon C [1]
  • Satoh I [1]
  • Shirouzu M [1]
  • Tani K [1]
  • Teutloff C [1]
  • Wang-otomo Z-Y [1]
  • Wang-otomo ZY [1]
  • Wendler P [1]
  • Yamagata A [1]
  • Yu L-J [1]
  • Yu LJ [1]

Author by ORCID

  • Bardy P [9]
  • Fuzik T [7]
  • Thomas Beatty J [7]
  • Pantucek R [7]
  • Plevka P [7]
  • Hrebik D [7]
  • Al-karadaghi S [3]
  • Hansson M [3]
  • Willows RD [3]
  • Fogg PCM [2]
  • Blaza JN [2]
  • Beatty JT [2]
  • Jenkins HT [2]
  • Antson AA [2]
  • Kirchberger PC [2]
  • Traore DAK [2]
  • Botka T [2]
  • Teutloff C [1]
  • Bracun L [1]
  • Mielke T [1]
  • Hartmann T [1]
  • Duffus BR [1]
  • Radon C [1]
  • Burger J [1]
  • Yu LJ [1]
  • Wendler P [1]
  • Mittelstadt G [1]
  • Wang-otomo ZY [1]
  • Kimura Y [1]
  • Tani K [1]

Journal

  • NAT COMMUN [9]
  • STRUCTURE [4]
  • BIORXIV [2]
  • J MOL BIOL [1]

Software

  • RELION [11]
  • IMAGIC [1]

Microscope

  • FEI TITAN KRIOS [9]
  • JEOL 2010F [3]
  • TFS GLACIOS [2]
  • FEI POLARA 300 [1]

Electron Source

  • FIELD EMISSION GUN [15]

Film or detector model

  • FEI FALCON III 4K X 4K [8]
  • FEI FALCON IV 4K X 4K [2]
  • GATAN K2 SUMMIT 4K X 4K [1]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • PDB [11]
  • UniProt [8]
  • AlphaFold DB [7]
  • PDBe-Kb [7]
  • InterPro [6]
  • Pfam [6]
  • ChEBI [4]
  • ChEMBL [3]
  • DrugBank [3]
  • EMPIAR [2]
  • Gene Ontology [2]
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Showing 1 - 10 of 15. Page 1 of 2
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EMD-50358
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Raw data
EMPIAR-12153
In vitro-induced genome-releasing intermediate of Rhodobacter microvirus Ebor computed with C5 symmetry
Release date: June 26, 2024
Resolution: 25.0 Å
EM Method: Single-particle

Bardy P, MacDonald CIW, Kirchberger PC, Jenkins HT, Botka T, Byrom L, Alim NTB, Traore DAK, Konig HC, Nicholas TR, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Beatty JT, Fogg PCM, Antson AA

bioRxiv (2024) [ Pubmed: 38915634 DOI: doi:10.1101/2024.06.11.598214 ]

EMD-50356
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Raw data
EMPIAR-12156
Empty capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Release date: June 12, 2024
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9ffg
Q-score: 0.49

Bardy P, MacDonald CIW, Kirchberger PC, Jenkins HT, Botka T, Byrom L, Alim NTB, Traore DAK, Konig HC, Nicholas TR, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Beatty JT, Fogg PCM, Antson AA

bioRxiv (2024) [ Pubmed: 38915634 DOI: doi:10.1101/2024.06.11.598214 ]

EMD-33931
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Structure of photosynthetic LH1-RC super-complex of Rhodobacter capsulatus
Release date: Feb. 22, 2023
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7yml
Q-score: 0.613

Tani K, Kanno R, Ji XC, Satoh I, Kobayashi Y, Hall M, Yu LJ, Kimura Y, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo ZY

Nat Commun (2023) 14 pp. 846-846 [ Pubmed: 36792596 DOI: doi:10.1038/s41467-023-36460-w ]

EMD-15862
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Cryo-EM structure of RC-LH1-PufX photosynthetic core complex from Rba. capsulatus
Release date: Feb. 1, 2023
Resolution: 2.589 Å
EM Method: Single-particle
Fitted PDBs: 8b64
Q-score: 0.639

Bracun L, Yamagata A, Christianson BM, Shirouzu M, Liu LN

Structure (2023) 31 pp. 318- [ Pubmed: 36738736 DOI: doi:10.1016/j.str.2023.01.006 ]

EMD-10442
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Capsid of native GTA particle computed with C5 symmetry
Release date: July 22, 2020
Resolution: 3.56 Å
EM Method: Single-particle
Fitted PDBs: 6tb9
Q-score: 0.496

Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P

Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]

EMD-10477
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Neck of native GTA particle computed with C6 symmetry
Release date: July 22, 2020
Resolution: 3.58 Å
EM Method: Single-particle
Fitted PDBs: 6te9
Q-score: 0.49

Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P

Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]

EMD-10478
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Tail of native GTA particle computed with helical refinement, C6 symmetry
Release date: July 22, 2020
Resolution: 3.89 Å
EM Method: Helical reconstruction
Fitted PDBs: 6tea
Q-score: 0.392

Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P

Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]

EMD-10490
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Baseplate of native GTA particle computed with C3 symmetry
Release date: July 22, 2020
Resolution: 3.99 Å
EM Method: Single-particle
Fitted PDBs: 6teh
Q-score: 0.427

Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P

Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]

EMD-10570
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Tail tube of native GTA particle computed with C3 symmetry
Release date: July 22, 2020
Resolution: 4.54 Å
EM Method: Single-particle

Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P

Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]

EMD-10571
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Baseplate of empty GTA particle computed with C3 symmetry
Release date: July 22, 2020
Resolution: 4.49 Å
EM Method: Single-particle

Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P

Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]

Sort by: Download
Showing 1 - 10 of 15. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [15]

Current status

  • REL [15]

Sample type

  • Protein [15]
  • Complex [10]
  • Ligand [4]
  • Sample [3]
  • Virus [2]

Organism

  • Rhodobacter capsulatus [15]
  • 3144506 [2]

EM Method

  • Single-particle [14]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [6]
  • ≥ 4Å and < 5Å [3]
  • ≥ 6Å and < 8Å [1]
  • ≥ 12Å and < 16Å [2]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 250-500 kDa [7]
  • 500-1000 kDa [1]
  • 1-2 MDa [1]
  • 2-5 MDa [1]
  • 5-10 MDa [1]

Release Date

  • 2024 [2]
  • 2023 [2]
  • 2020 [8]
  • 2010 [3]

Author by name

  • Bardy P [9]
  • Fuzik T [7]
  • Hrebik D [7]
  • Pantucek R [7]
  • Plevka P [7]
  • Thomas Beatty J [7]
  • Beatty JT [5]
  • Al-karadaghi S [3]
  • Berglund L [3]
  • Elmlund D [3]
  • Elmlund H [3]
  • Emanuelsson C [3]
  • Hansson M [3]
  • Hebert H [3]
  • Lindahl M [3]
  • Lundqvist J [3]
  • Peterson-wulff R [3]
  • Willows R [3]
  • Willows RD [3]
  • Wulff RP [3]
  • Alim NTB [2]
  • Antson AA [2]
  • Blaza JN [2]
  • Botka T [2]
  • Byrom L [2]
  • Chechik M [2]
  • Fogg PCM [2]
  • Hart SJ [2]
  • Jenkins HT [2]
  • Kirchberger PC [2]
  • Konig HC [2]
  • Macdonald CIW [2]
  • Nicholas TR [2]
  • Traore DAK [2]
  • Turkenburg JP [2]
  • Bracun L [1]
  • Burger J [1]
  • Christianson BM [1]
  • Duffus BR [1]
  • Hall M [1]
  • Hartmann T [1]
  • Humbel BM [1]
  • Ji X-C [1]
  • Ji XC [1]
  • Kanno R [1]
  • Kimura Y [1]
  • Kobayashi Y [1]
  • Leimkuhler S [1]
  • Liu LN [1]
  • Madigan MT [1]
  • Mielke T [1]
  • Mittelstadt G [1]
  • Mizoguchi A [1]
  • Nagashima KVP [1]
  • Radon C [1]
  • Satoh I [1]
  • Shirouzu M [1]
  • Tani K [1]
  • Teutloff C [1]
  • Wang-otomo Z-Y [1]
  • Wang-otomo ZY [1]
  • Wendler P [1]
  • Yamagata A [1]
  • Yu L-J [1]
  • Yu LJ [1]

Author by ORCID

  • Bardy P [9]
  • Fuzik T [7]
  • Thomas Beatty J [7]
  • Pantucek R [7]
  • Plevka P [7]
  • Hrebik D [7]
  • Al-karadaghi S [3]
  • Hansson M [3]
  • Willows RD [3]
  • Fogg PCM [2]
  • Blaza JN [2]
  • Beatty JT [2]
  • Jenkins HT [2]
  • Antson AA [2]
  • Kirchberger PC [2]
  • Traore DAK [2]
  • Botka T [2]
  • Teutloff C [1]
  • Bracun L [1]
  • Mielke T [1]
  • Hartmann T [1]
  • Duffus BR [1]
  • Radon C [1]
  • Burger J [1]
  • Yu LJ [1]
  • Wendler P [1]
  • Mittelstadt G [1]
  • Wang-otomo ZY [1]
  • Kimura Y [1]
  • Tani K [1]

Journal

  • NAT COMMUN [9]
  • STRUCTURE [4]
  • BIORXIV [2]
  • J MOL BIOL [1]

Software

  • RELION [11]
  • IMAGIC [1]

Microscope

  • FEI TITAN KRIOS [9]
  • JEOL 2010F [3]
  • TFS GLACIOS [2]
  • FEI POLARA 300 [1]

Electron Source

  • FIELD EMISSION GUN [15]

Film or detector model

  • FEI FALCON III 4K X 4K [8]
  • FEI FALCON IV 4K X 4K [2]
  • GATAN K2 SUMMIT 4K X 4K [1]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • PDB [11]
  • UniProt [8]
  • AlphaFold DB [7]
  • PDBe-Kb [7]
  • InterPro [6]
  • Pfam [6]
  • ChEBI [4]
  • ChEMBL [3]
  • DrugBank [3]
  • EMPIAR [2]
  • Gene Ontology [2]