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natural_source_ncbi_code:"10407"

Filter By

Current Database

  • EMDB [85]

Current status

  • REL [85]

Sample type

  • Virus [65]
  • Protein [57]
  • Sample [29]
  • Complex [17]
  • Ligand [1]

Organism

  • Hepatitis b virus [85]
  • Homo sapiens [18]
  • Synthetic construct [8]
  • Hepatitis b virus [5]
  • Ondatra zibethicus [2]

EM Method

  • Single-particle [84]
  • Subtomogram averaging [1]

Resolution

  • ≥ 2Å and < 3Å [15]
  • ≥ 3Å and < 4Å [26]
  • ≥ 4Å and < 5Å [8]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [11]
  • ≥ 12Å and < 16Å [6]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [3]
  • ≥ 30Å [2]

Model molecular weight

  • 50-100 kDa [4]
  • 100-250 kDa [6]
  • 250-500 kDa [2]
  • 2-5 MDa [2]
  • 5-10 MDa [10]
  • > 10 MDa [1]

Release Date

  • 2025 [8]
  • 2024 [18]
  • 2023 [2]
  • 2022 [2]
  • 2021 [13]
  • 2019 [6]
  • 2018 [4]
  • 2017 [3]
  • 2016 [7]
  • 2015 [1]
  • 2014 [1]
  • 2013 [5]
  • 2012 [3]
  • 2007 [10]
  • 2006 [2]

Author by name

  • Zlotnick A [29]
  • Bottcher B [25]
  • Wang JC-Y [16]
  • Makbul C [13]
  • Hadden-perilla JA [12]
  • Perez-segura C [12]
  • Khayenko V [11]
  • Maric HM [11]
  • Antoni C [10]
  • Jarrold MF [10]
  • Seitz S [10]
  • Urban S [10]
  • Chen C [9]
  • Wang JC [8]
  • Bianchini EN [7]
  • Cai Y [7]
  • Cazenave C [7]
  • Delaleau M [7]
  • Flanagan J [7]
  • Gallucci L [7]
  • Hu J [7]
  • Kann M [7]
  • Kiefer DZ [7]
  • Liu H [7]
  • Luckenbaugh L [7]
  • Pierson EE [7]
  • Shanklin J [7]
  • Wang JCY [7]
  • Maskell DP [6]
  • Patel N [6]
  • Ranson NA [6]
  • Stockley PG [6]
  • Twarock R [6]
  • Weiss EU [6]
  • Chen L [5]
  • He X [5]
  • Kim C [5]
  • Tao W [5]
  • Dhasan RS [4]
  • Dhason MS [4]
  • Kang Y [4]
  • Liu X [4]
  • Xu J [4]
  • Antolinez S [3]
  • Bingham R [3]
  • Bohon J [3]
  • Chan CP [3]
  • Cheng N [3]
  • Cingolani G [3]
  • Clark S [3]
  • Dykeman E [3]
  • Farquhar ER [3]
  • Hemmelmann N [3]
  • Ho SM [3]
  • Hou CD [3]
  • Kachler S [3]
  • Klein S [3]
  • Ko YH [3]
  • Kwok DCY [3]
  • Lai LTF [3]
  • Lau WCY [3]
  • Li F [3]
  • Lokareddy RK [3]
  • Maric MH [3]
  • Marin JF [3]
  • Mata CP [3]
  • Ngo JCK [3]
  • Schulte C [3]
  • Steven AC [3]
  • Thompson RF [3]
  • Tuma R [3]
  • Watts NR [3]
  • Wei EU [3]
  • White SJ [3]
  • Wingfield PT [3]
  • Wong ICK [3]
  • Wu W [3]
  • Yang R [3]
  • Yip RPH [3]
  • Asami J [2]
  • Beales L [2]
  • Blond D [2]
  • Cao J [2]
  • Chisari FV [2]
  • Comas-garcia M [2]
  • Dotsch V [2]
  • Drew D [2]
  • Egorov VV [2]
  • Farquhar E [2]
  • Flegler V [2]
  • Flegler VJ [2]
  • Gallagher JR [2]
  • Gao Y [2]
  • Garmay YP [2]
  • Gilbert RJ [2]
  • Gilbert RJC [2]
  • Gorshkov AN [2]
  • Gulati NM [2]
  • Hallberg BM [2]
  • Harris AK [2]

Author by ORCID

  • Zlotnick A [22]
  • Bottcher B [22]
  • Wang JC [8]
  • Wang JC-Y [8]
  • Maric HM [8]
  • Makbul C [8]
  • Khayenko V [8]
  • Gallucci L [7]
  • Jarrold MF [7]
  • Delaleau M [7]
  • Stockley PG [6]
  • Ranson NA [6]
  • Chen L [5]
  • Perez-segura C [5]
  • Hadden-perilla JA [5]
  • Kang Y [4]
  • Xu J [4]
  • Patel N [3]
  • Li F [3]
  • Hou CD [3]
  • Twarock R [3]
  • Lau WCY [3]
  • Ngo JCK [3]
  • Farquhar ER [3]
  • Clark S [3]
  • Bohon J [3]
  • Cingolani G [3]
  • White SJ [3]
  • Wingfield PT [3]
  • Tuma R [3]
  • Mata CP [3]
  • Ko YH [3]
  • Yang R [3]
  • Marin JF [3]
  • Antolinez S [3]
  • Klein S [3]
  • Park JH [2]
  • Park SY [2]
  • Ishimoto N [2]
  • Gilbert RJ [2]
  • Cao J [2]
  • Shimizu T [2]
  • Huang R [2]
  • Stuart DI [2]
  • Ohto U [2]
  • Watashi K [2]
  • Chisari FV [2]
  • Nomura N [2]
  • Rasmussen T [2]
  • Shvetsov AV [2]
  • Beales L [2]
  • Nassal M [2]
  • Garmay YP [2]
  • Steven AC [2]
  • Shibata M [1]
  • Jih J [1]
  • Mizokami M [1]
  • Neuveut C [1]
  • Jay B [1]
  • Bharat TA [1]
  • Scheres SHW [1]
  • Russo CJ [1]
  • Maenaka K [1]
  • Tanaka H [1]
  • Kishimoto N [1]
  • Misumi S [1]
  • Takeda H [1]
  • Passmore LA [1]
  • Sumikama T [1]
  • Kita S [1]
  • Machida S [1]
  • Sasaki M [1]
  • Diogo Dias J [1]

Journal

  • PLOS PATHOG [16]
  • EMBO J [10]
  • MICROORGANISMS [8]
  • STRUCTURE [8]
  • CELL DISCOV [4]
  • PNAS [4]
  • TO BE PUBLISHED [4]
  • COMMUN BIOL [3]
  • ELIFE [3]
  • J MOL BIOL [3]
  • NAT MICROBIOL [3]
  • SCI ADV [3]
  • BIOPHYS.CHEM. [2]
  • BIORXIV [2]
  • J BIOL CHEM [2]
  • NAT STRUCT MOL BIOL [2]
  • PLOS COMPUT BIOL [2]
  • ULTRAMICROSCOPY [2]
  • VIRUS RES [2]
  • J STRUCT BIOL [1]
  • PLOS ONE [1]

Software

  • RELION [37]
  • CTFFIND [16]
  • AUTO3DEM [13]
  • MRC [10]
  • CRYOSPARC [5]
  • CHIMERA [3]
  • GCTF [2]
  • IMAGIC, FREALIGN AND SPIDER [2]
  • CHIMERA,SITUS [1]
  • EMAN,EMAN2 [1]
  • IMIRS [1]
  • IMOD, TOMO3D, RELION [1]

Microscope

  • FEI TITAN KRIOS [31]
  • TFS KRIOS [16]
  • JEOL 3200FS [14]
  • FEI/PHILIPS CM120T [10]
  • FEI TALOS ARCTICA [4]
  • FEI/PHILIPS CM200FEG [3]
  • TFS TALOS F200C [3]
  • FEI POLARA 300 [2]
  • FEI TECNAI 20 [2]

Electron Source

  • FIELD EMISSION GUN [75]
  • LAB6 [10]

Film or detector model

  • FEI FALCON III 4K X 4K [22]
  • GATAN ULTRASCAN 4000 4K X 4K [16]
  • GATAN K3 BIOQUANTUM 6K X 4K [15]
  • KODAK SO-163 FILM [13]
  • FEI FALCON II 4K X 4K [7]
  • GATAN K3 6K X 4K [5]
  • GATAN K2 SUMMIT 4K X 4K [3]
  • DIRECT ELECTRON DE-20 5K X 3K [2]
  • GATAN K2 4K X 4K [1]

External links

  • PDB [25]
  • UniProt [25]
  • PDBe-Kb [17]
  • Pfam [13]
  • Gene Ontology [12]
  • InterPro [12]
  • AlphaFold DB [7]
  • Complex Portal [3]
  • CATH [1]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 85. Page 1 of 9
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EMD-64014
Download Map
3D View
HBsAg in complex with H020 Fab
Release date: Oct. 29, 2025
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 9ubq
Q-score: 0.55

Tao W, He X, Chen L

J Mol Biol (2025) 437 pp. 169483-169483 [ Pubmed: 41075972 DOI: doi:10.1016/j.jmb.2025.169483 ]

EMD-63960
Composite map
Download Map
3D View
HBsAg in complex with HBC34 Fab
Release date: July 2, 2025
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 9u9b
Q-score: 0.472

He X, Tao W, Kang Y, Xu J, Liu X, Chen L

Cell Discov (2025) 11 pp. 57-57 [ DOI: doi:10.1038/s41421-025-00803-2 Pubmed: 40523894 ]

EMD-64465
Download Map
3D View
HBsAg AGL region in complex with HBC34 Fab variable region
Release date: July 2, 2025
Resolution: 3.2 Å
EM Method: Single-particle

He X, Tao W, Kang Y, Xu J, Liu X, Chen L

Cell Discov (2025) 11 pp. 57-57 [ DOI: doi:10.1038/s41421-025-00803-2 Pubmed: 40523894 ]

EMD-64466
Download Map
3D View
HBsAg in complex with HBC34 Fab
Release date: July 2, 2025
Resolution: 3.25 Å
EM Method: Single-particle

He X, Tao W, Kang Y, Xu J, Liu X, Chen L

Cell Discov (2025) 11 pp. 57-57 [ DOI: doi:10.1038/s41421-025-00803-2 Pubmed: 40523894 ]

EMD-64467
Download Map
3D View
HBsAg in complex with HBC34 Fab
Release date: July 2, 2025
Resolution: 3.25 Å
EM Method: Single-particle

He X, Tao W, Kang Y, Xu J, Liu X, Chen L

Cell Discov (2025) 11 pp. 57-57 [ DOI: doi:10.1038/s41421-025-00803-2 Pubmed: 40523894 ]

EMD-61175
Download Map
3D View
HBx complexed with DDB1
Release date: June 4, 2025
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 9j6k
Q-score: 0.34

Tanaka H, Diogo Dias J, Jay B, Kita S, Sasaki M, Takeda H, Kishimoto N, Sasaki S, Misumi S, Mizokami M, Neuveut C, Sumikama T, Shibata M, Maenaka K, Machida S

PNAS (2025) 122 pp. e2421325122-e2421325122 [ Pubmed: 40512786 DOI: doi:10.1073/pnas.2421325122 ]

EMD-19437
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3D View
Hepatitis B virus core antigen HBc with insertion of SpyCatcher at MIR
Release date: Jan. 29, 2025
Resolution: 3.84 Å
EM Method: Single-particle

Petrova E, Teixeira AI, Hallberg BM

To Be Published

EMD-19438
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3D View
Hepatitis B virus core antigen HBc with insertion of SpyCatcher at MIR and conjugated to single chain Fc domain
Release date: Jan. 29, 2025
Resolution: 3.43 Å
EM Method: Single-particle

Petrova E, Teixeira AI, Hallberg BM

To Be Published

EMD-42822
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3D View
HBV T 4 capsid from HEK-293T cells
Release date: Nov. 20, 2024
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8uyt
Q-score: 0.45

Bianchini EN, Perez-Segura C, Liu H, Luckenbaugh L, Flanagan J, Cai Y, Shanklin J, Zlotnick A, Hadden-Perilla JA, Hu J, Wang JCY

Structure (2025) [ ]

EMD-42823
Download Map
3D View
HBV T 3 capsid from HEK-293T cells
Release date: Nov. 20, 2024
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8uyu
Q-score: 0.401

Bianchini EN, Perez-Segura C, Liu H, Luckenbaugh L, Flanagan J, Cai Y, Shanklin J, Zlotnick A, Hadden-Perilla JA, Hu J, Wang JCY

Structure (2025) [ ]

Sort by: Download
Showing 1 - 10 of 85. Page 1 of 9
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [85]

Current status

  • REL [85]

Sample type

  • Virus [65]
  • Protein [57]
  • Sample [29]
  • Complex [17]
  • Ligand [1]

Organism

  • Hepatitis b virus [85]
  • Homo sapiens [18]
  • Synthetic construct [8]
  • Hepatitis b virus [5]
  • Ondatra zibethicus [2]

EM Method

  • Single-particle [84]
  • Subtomogram averaging [1]

Resolution

  • ≥ 2Å and < 3Å [15]
  • ≥ 3Å and < 4Å [26]
  • ≥ 4Å and < 5Å [8]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [11]
  • ≥ 12Å and < 16Å [6]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [3]
  • ≥ 30Å [2]

Model molecular weight

  • 50-100 kDa [4]
  • 100-250 kDa [6]
  • 250-500 kDa [2]
  • 2-5 MDa [2]
  • 5-10 MDa [10]
  • > 10 MDa [1]

Release Date

  • 2025 [8]
  • 2024 [18]
  • 2023 [2]
  • 2022 [2]
  • 2021 [13]
  • 2019 [6]
  • 2018 [4]
  • 2017 [3]
  • 2016 [7]
  • 2015 [1]
  • 2014 [1]
  • 2013 [5]
  • 2012 [3]
  • 2007 [10]
  • 2006 [2]

Author by name

  • Zlotnick A [29]
  • Bottcher B [25]
  • Wang JC-Y [16]
  • Makbul C [13]
  • Hadden-perilla JA [12]
  • Perez-segura C [12]
  • Khayenko V [11]
  • Maric HM [11]
  • Antoni C [10]
  • Jarrold MF [10]
  • Seitz S [10]
  • Urban S [10]
  • Chen C [9]
  • Wang JC [8]
  • Bianchini EN [7]
  • Cai Y [7]
  • Cazenave C [7]
  • Delaleau M [7]
  • Flanagan J [7]
  • Gallucci L [7]
  • Hu J [7]
  • Kann M [7]
  • Kiefer DZ [7]
  • Liu H [7]
  • Luckenbaugh L [7]
  • Pierson EE [7]
  • Shanklin J [7]
  • Wang JCY [7]
  • Maskell DP [6]
  • Patel N [6]
  • Ranson NA [6]
  • Stockley PG [6]
  • Twarock R [6]
  • Weiss EU [6]
  • Chen L [5]
  • He X [5]
  • Kim C [5]
  • Tao W [5]
  • Dhasan RS [4]
  • Dhason MS [4]
  • Kang Y [4]
  • Liu X [4]
  • Xu J [4]
  • Antolinez S [3]
  • Bingham R [3]
  • Bohon J [3]
  • Chan CP [3]
  • Cheng N [3]
  • Cingolani G [3]
  • Clark S [3]
  • Dykeman E [3]
  • Farquhar ER [3]
  • Hemmelmann N [3]
  • Ho SM [3]
  • Hou CD [3]
  • Kachler S [3]
  • Klein S [3]
  • Ko YH [3]
  • Kwok DCY [3]
  • Lai LTF [3]
  • Lau WCY [3]
  • Li F [3]
  • Lokareddy RK [3]
  • Maric MH [3]
  • Marin JF [3]
  • Mata CP [3]
  • Ngo JCK [3]
  • Schulte C [3]
  • Steven AC [3]
  • Thompson RF [3]
  • Tuma R [3]
  • Watts NR [3]
  • Wei EU [3]
  • White SJ [3]
  • Wingfield PT [3]
  • Wong ICK [3]
  • Wu W [3]
  • Yang R [3]
  • Yip RPH [3]
  • Asami J [2]
  • Beales L [2]
  • Blond D [2]
  • Cao J [2]
  • Chisari FV [2]
  • Comas-garcia M [2]
  • Dotsch V [2]
  • Drew D [2]
  • Egorov VV [2]
  • Farquhar E [2]
  • Flegler V [2]
  • Flegler VJ [2]
  • Gallagher JR [2]
  • Gao Y [2]
  • Garmay YP [2]
  • Gilbert RJ [2]
  • Gilbert RJC [2]
  • Gorshkov AN [2]
  • Gulati NM [2]
  • Hallberg BM [2]
  • Harris AK [2]

Author by ORCID

  • Zlotnick A [22]
  • Bottcher B [22]
  • Wang JC [8]
  • Wang JC-Y [8]
  • Maric HM [8]
  • Makbul C [8]
  • Khayenko V [8]
  • Gallucci L [7]
  • Jarrold MF [7]
  • Delaleau M [7]
  • Stockley PG [6]
  • Ranson NA [6]
  • Chen L [5]
  • Perez-segura C [5]
  • Hadden-perilla JA [5]
  • Kang Y [4]
  • Xu J [4]
  • Patel N [3]
  • Li F [3]
  • Hou CD [3]
  • Twarock R [3]
  • Lau WCY [3]
  • Ngo JCK [3]
  • Farquhar ER [3]
  • Clark S [3]
  • Bohon J [3]
  • Cingolani G [3]
  • White SJ [3]
  • Wingfield PT [3]
  • Tuma R [3]
  • Mata CP [3]
  • Ko YH [3]
  • Yang R [3]
  • Marin JF [3]
  • Antolinez S [3]
  • Klein S [3]
  • Park JH [2]
  • Park SY [2]
  • Ishimoto N [2]
  • Gilbert RJ [2]
  • Cao J [2]
  • Shimizu T [2]
  • Huang R [2]
  • Stuart DI [2]
  • Ohto U [2]
  • Watashi K [2]
  • Chisari FV [2]
  • Nomura N [2]
  • Rasmussen T [2]
  • Shvetsov AV [2]
  • Beales L [2]
  • Nassal M [2]
  • Garmay YP [2]
  • Steven AC [2]
  • Shibata M [1]
  • Jih J [1]
  • Mizokami M [1]
  • Neuveut C [1]
  • Jay B [1]
  • Bharat TA [1]
  • Scheres SHW [1]
  • Russo CJ [1]
  • Maenaka K [1]
  • Tanaka H [1]
  • Kishimoto N [1]
  • Misumi S [1]
  • Takeda H [1]
  • Passmore LA [1]
  • Sumikama T [1]
  • Kita S [1]
  • Machida S [1]
  • Sasaki M [1]
  • Diogo Dias J [1]

Journal

  • PLOS PATHOG [16]
  • EMBO J [10]
  • MICROORGANISMS [8]
  • STRUCTURE [8]
  • CELL DISCOV [4]
  • PNAS [4]
  • TO BE PUBLISHED [4]
  • COMMUN BIOL [3]
  • ELIFE [3]
  • J MOL BIOL [3]
  • NAT MICROBIOL [3]
  • SCI ADV [3]
  • BIOPHYS.CHEM. [2]
  • BIORXIV [2]
  • J BIOL CHEM [2]
  • NAT STRUCT MOL BIOL [2]
  • PLOS COMPUT BIOL [2]
  • ULTRAMICROSCOPY [2]
  • VIRUS RES [2]
  • J STRUCT BIOL [1]
  • PLOS ONE [1]

Software

  • RELION [37]
  • CTFFIND [16]
  • AUTO3DEM [13]
  • MRC [10]
  • CRYOSPARC [5]
  • CHIMERA [3]
  • GCTF [2]
  • IMAGIC, FREALIGN AND SPIDER [2]
  • CHIMERA,SITUS [1]
  • EMAN,EMAN2 [1]
  • IMIRS [1]
  • IMOD, TOMO3D, RELION [1]

Microscope

  • FEI TITAN KRIOS [31]
  • TFS KRIOS [16]
  • JEOL 3200FS [14]
  • FEI/PHILIPS CM120T [10]
  • FEI TALOS ARCTICA [4]
  • FEI/PHILIPS CM200FEG [3]
  • TFS TALOS F200C [3]
  • FEI POLARA 300 [2]
  • FEI TECNAI 20 [2]

Electron Source

  • FIELD EMISSION GUN [75]
  • LAB6 [10]

Film or detector model

  • FEI FALCON III 4K X 4K [22]
  • GATAN ULTRASCAN 4000 4K X 4K [16]
  • GATAN K3 BIOQUANTUM 6K X 4K [15]
  • KODAK SO-163 FILM [13]
  • FEI FALCON II 4K X 4K [7]
  • GATAN K3 6K X 4K [5]
  • GATAN K2 SUMMIT 4K X 4K [3]
  • DIRECT ELECTRON DE-20 5K X 3K [2]
  • GATAN K2 4K X 4K [1]

External links

  • PDB [25]
  • UniProt [25]
  • PDBe-Kb [17]
  • Pfam [13]
  • Gene Ontology [12]
  • InterPro [12]
  • AlphaFold DB [7]
  • Complex Portal [3]
  • CATH [1]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
  • SCOP2 [1]