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natural_source_ncbi_code:"10377"

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Current Database

  • EMDB [18]

Current status

  • REL [18]

Sample type

  • Virus [15]
  • Protein [10]
  • Complex [3]
  • DNA [2]
  • Ligand [1]
  • Other [1]

Organism

  • Epstein-barr virus (strain gd1) [18]
  • Epstein-barr virus (strain gd1) [5]

EM Method

  • Single-particle [18]

Resolution

  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [7]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [2]

Model molecular weight

  • 100-250 kDa [2]
  • 500-1000 kDa [1]
  • 1-2 MDa [3]
  • 5-10 MDa [2]
  • > 10 MDa [2]

Release Date

  • 2023 [2]
  • 2022 [1]
  • 2020 [15]

Author by name

  • Li Z [15]
  • Bi GQ [10]
  • Cui Y [10]
  • Cui YX [10]
  • Dai X [10]
  • Gong D [10]
  • Liu W [10]
  • Sun R [10]
  • Wang C [10]
  • Zhou ZH [10]
  • Dai XH [7]
  • Gong DY [7]
  • Li ZH [7]
  • Wang CY [7]
  • Xu M [6]
  • Zeng MS [6]
  • Zhang X [6]
  • Zhong Q [6]
  • Dong L [5]
  • Pang J [5]
  • Yu X [5]
  • Zeng M [5]
  • Mei Y [2]
  • Bu GL [1]
  • Chen XC [1]
  • Dheekollu J [1]
  • Fang XY [1]
  • Feng GK [1]
  • Hong DC [1]
  • Kang YF [1]
  • Kim HJ [1]
  • Kong XW [1]
  • Li Y [1]
  • Lieberman P [1]
  • Lieberman PM [1]
  • Lin WJ [1]
  • Liu YN [1]
  • Liu Z [1]
  • Lu ZZ [1]
  • Messick TE [1]
  • Moiskeenkova-bell V [1]
  • Molugu S [1]
  • Munoz LJC [1]
  • Murakami K [1]
  • Peng YJ [1]
  • Sun C [1]
  • Wang AJ [1]
  • Xie C [1]
  • Xu HQ [1]
  • Zeng YX [1]
  • Zhang H [1]
  • Zhong L [1]
  • Zhou L [1]
  • Zhu QY [1]

Author by ORCID

  • Liu W [10]
  • Bi GQ [10]
  • Dai X [10]
  • Li Z [10]
  • Zhou ZH [10]
  • Cui Y [10]
  • Xu M [5]
  • Li Z [5]
  • Yu X [5]
  • Zhong Q [5]
  • Zeng MS [5]
  • Messick TE [1]
  • Kim HJ [1]
  • Munoz LJC [1]
  • Murakami K [1]
  • Lieberman PM [1]

Journal

  • NAT MICROBIOL [10]
  • CELL RES [5]
  • CELL HOST MICROBE [1]
  • J VIROL [1]
  • TO BE PUBLISHED [1]

Software

  • RELION [6]
  • CRYOSPARC [1]

Microscope

  • FEI TITAN KRIOS [18]

Electron Source

  • FIELD EMISSION GUN [18]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]
  • GATAN K2 QUANTUM 4K X 4K [5]
  • GATAN K3 6K X 4K [2]

External links

  • Gene Ontology [10]
  • InterPro [10]
  • PDB [10]
  • PDBe-Kb [10]
  • Pfam [10]
  • UniProt [10]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
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Showing 1 - 10 of 18. Page 1 of 2
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EMD-27500
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EBNA1 DNA binding domain DBD 458-617 2 repeats of family repeat FR region
Release date: May 17, 2023
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 8dlf
Q-score: 0.308

Mei Y, Messick TE, Dheekollu J, Kim HJ, Molugu S, Munoz LJC, Moiskeenkova-Bell V, Murakami K, Lieberman PM

J Virol (2022) 96 pp. e0094922-e0094922 [ Pubmed: 36037477 DOI: doi:10.1128/jvi.00949-22 ]

EMD-26305
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EBNA1 DNA binding domain 401-641 binds to half Dyad Symmetry element
Release date: Feb. 22, 2023
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7u1t
Q-score: 0.299

Mei Y, Lieberman P

To Be Published

EMD-32088
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Computational design of a potent Epstein-Barr virus fusion protein gB nanoparticle vaccine
Release date: Oct. 26, 2022
Resolution: 3.3 Å
EM Method: Single-particle

Sun C, Kang YF, Fang XY, Liu YN, Bu GL, Wang AJ, Li Y, Zhu QY, Zhang H, Xie C, Kong XW, Peng YJ, Lin WJ, Zhou L, Chen XC, Lu ZZ, Xu HQ, Hong DC, Zhang X, Zhong L, Feng GK, Zeng YX, Xu M, Zhong Q, Liu Z, Zeng MS

Cell Host Microbe (2023) 31 pp. 1882- [ DOI: doi:10.1016/j.chom.2023.09.011 ]

EMD-30155
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Epstein-Barr virus, C12 portal dodecamer
Release date: Sept. 30, 2020
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7bqt
Q-score: 0.276

Li Z, Zhang X, Dong L, Pang J, Xu M, Zhong Q, Zeng MS, Yu X

Cell Res (2020) 30 pp. 873-884 [ Pubmed: 32620850 DOI: doi:10.1038/s41422-020-0363-0 ]

EMD-30157
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Epstein-Barr virus, C5 portal vertex
Release date: Sept. 30, 2020
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7bqx
Q-score: 0.365

Li Z, Zhang X, Dong L, Pang J, Xu M, Zhong Q, Zeng MS, Yu X

Cell Res (2020) 30 pp. 873-884 [ Pubmed: 32620850 DOI: doi:10.1038/s41422-020-0363-0 ]

EMD-30158
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Epstein-Barr virus, C1 portal-proximal penton vertex, CATC binding
Release date: Sept. 30, 2020
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7br7
Q-score: 0.401

Li Z, Zhang X, Dong L, Pang J, Xu M, Zhong Q, Zeng MS, Yu X

Cell Res (2020) 30 pp. 873-884 [ Pubmed: 32620850 DOI: doi:10.1038/s41422-020-0363-0 ]

EMD-30159
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Epstein-Barr virus, C5 penton vertex, CATC absent
Release date: Sept. 30, 2020
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7br8
Q-score: 0.039

Li Z, Zhang X, Dong L, Pang J, Xu M, Zhong Q, Zeng MS, Yu X

Cell Res (2020) 30 pp. 873-884 [ Pubmed: 32620850 DOI: doi:10.1038/s41422-020-0363-0 ]

EMD-30162
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Epstein-Barr virus, icosahedral tegumented capsid reconstruction
Release date: Sept. 30, 2020
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7bsi
Q-score: 0.375

Li Z, Zhang X, Dong L, Pang J, Xu M, Zhong Q, Zeng MS, Yu X

Cell Res (2020) 30 pp. 873-884 [ Pubmed: 32620850 DOI: doi:10.1038/s41422-020-0363-0 ]

EMD-21504
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Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Release date: July 15, 2020
Resolution: 5.5 Å
EM Method: Single-particle
Fitted PDBs: 6w19
Q-score: 0.059

Liu W, Cui Y, Wang C, Li Z, Gong D, Dai X, Bi GQ, Sun R, Zhou ZH

Nat Microbiol (2020) 5 pp. 1285-1298 [ Pubmed: 32719506 DOI: doi:10.1038/s41564-020-0758-1 ]

EMD-21505
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Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Release date: July 15, 2020
Resolution: 7.8 Å
EM Method: Single-particle

Liu W, Cui Y, Wang C, Li Z, Gong D, Dai X, Bi GQ, Sun R, Zhou ZH

Nat Microbiol (2020) 5 pp. 1285-1298 [ Pubmed: 32719506 DOI: doi:10.1038/s41564-020-0758-1 ]

Sort by: Download
Showing 1 - 10 of 18. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [18]

Current status

  • REL [18]

Sample type

  • Virus [15]
  • Protein [10]
  • Complex [3]
  • DNA [2]
  • Ligand [1]
  • Other [1]

Organism

  • Epstein-barr virus (strain gd1) [18]
  • Epstein-barr virus (strain gd1) [5]

EM Method

  • Single-particle [18]

Resolution

  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [7]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [2]

Model molecular weight

  • 100-250 kDa [2]
  • 500-1000 kDa [1]
  • 1-2 MDa [3]
  • 5-10 MDa [2]
  • > 10 MDa [2]

Release Date

  • 2023 [2]
  • 2022 [1]
  • 2020 [15]

Author by name

  • Li Z [15]
  • Bi GQ [10]
  • Cui Y [10]
  • Cui YX [10]
  • Dai X [10]
  • Gong D [10]
  • Liu W [10]
  • Sun R [10]
  • Wang C [10]
  • Zhou ZH [10]
  • Dai XH [7]
  • Gong DY [7]
  • Li ZH [7]
  • Wang CY [7]
  • Xu M [6]
  • Zeng MS [6]
  • Zhang X [6]
  • Zhong Q [6]
  • Dong L [5]
  • Pang J [5]
  • Yu X [5]
  • Zeng M [5]
  • Mei Y [2]
  • Bu GL [1]
  • Chen XC [1]
  • Dheekollu J [1]
  • Fang XY [1]
  • Feng GK [1]
  • Hong DC [1]
  • Kang YF [1]
  • Kim HJ [1]
  • Kong XW [1]
  • Li Y [1]
  • Lieberman P [1]
  • Lieberman PM [1]
  • Lin WJ [1]
  • Liu YN [1]
  • Liu Z [1]
  • Lu ZZ [1]
  • Messick TE [1]
  • Moiskeenkova-bell V [1]
  • Molugu S [1]
  • Munoz LJC [1]
  • Murakami K [1]
  • Peng YJ [1]
  • Sun C [1]
  • Wang AJ [1]
  • Xie C [1]
  • Xu HQ [1]
  • Zeng YX [1]
  • Zhang H [1]
  • Zhong L [1]
  • Zhou L [1]
  • Zhu QY [1]

Author by ORCID

  • Liu W [10]
  • Bi GQ [10]
  • Dai X [10]
  • Li Z [10]
  • Zhou ZH [10]
  • Cui Y [10]
  • Xu M [5]
  • Li Z [5]
  • Yu X [5]
  • Zhong Q [5]
  • Zeng MS [5]
  • Messick TE [1]
  • Kim HJ [1]
  • Munoz LJC [1]
  • Murakami K [1]
  • Lieberman PM [1]

Journal

  • NAT MICROBIOL [10]
  • CELL RES [5]
  • CELL HOST MICROBE [1]
  • J VIROL [1]
  • TO BE PUBLISHED [1]

Software

  • RELION [6]
  • CRYOSPARC [1]

Microscope

  • FEI TITAN KRIOS [18]

Electron Source

  • FIELD EMISSION GUN [18]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]
  • GATAN K2 QUANTUM 4K X 4K [5]
  • GATAN K3 6K X 4K [2]

External links

  • Gene Ontology [10]
  • InterPro [10]
  • PDB [10]
  • PDBe-Kb [10]
  • Pfam [10]
  • UniProt [10]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]