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natural_source_ncbi_code:"10306"

Filter By

Current Database

  • EMDB [69]

Current status

  • REL [69]

Sample type

  • Complex [58]
  • Protein [38]
  • DNA [20]
  • Ligand [14]
  • Virus [11]
  • Sample [4]

Organism

  • Human herpesvirus 1 [69]
  • Synthetic construct [20]
  • Mus musculus [2]
  • Human herpesvirus 1 [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [69]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [23]
  • ≥ 3Å and < 4Å [17]
  • ≥ 4Å and < 5Å [11]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [7]
  • ≥ 12Å and < 16Å [2]
  • ≥ 16Å and < 20Å [2]

Model molecular weight

  • 100-250 kDa [15]
  • 250-500 kDa [3]
  • 500-1000 kDa [4]
  • 1-2 MDa [2]
  • > 10 MDa [1]

Release Date

  • 2025 [28]
  • 2024 [28]
  • 2023 [2]
  • 2019 [5]
  • 2018 [2]
  • 2012 [4]

Author by name

  • Elias P [29]
  • Grunewald K [29]
  • Gustavsson E [29]
  • Hallberg BM [29]
  • Zhou ZH [26]
  • Jih J [24]
  • Alvarez-cabrera AL [19]
  • Crofut E [19]
  • Crofut EH [19]
  • Kashyap S [19]
  • Liu Y-T [19]
  • Stevens A [19]
  • Hallberg M [10]
  • Abraham J [7]
  • Bian Y [7]
  • Coen DM [7]
  • Dai X [7]
  • Filman DJ [7]
  • Hogle J [7]
  • Hogle JM [7]
  • Mukherjee P [7]
  • Oroszlan G [7]
  • Pan J [7]
  • Shankar S [7]
  • Shekhar M [7]
  • Yang P [7]
  • Yu Z [7]
  • Bi GQ [5]
  • Liu YT [5]
  • Conway JF [4]
  • Homa FL [4]
  • Huffman JB [3]
  • Toropova K [3]
  • Achkar JM [2]
  • Almo SC [2]
  • Aschner CB [2]
  • Cockrell SK [2]
  • Dai XH [2]
  • Garforth SJ [2]
  • Harrison SC [2]
  • Herold BC [2]
  • Kelsoe G [2]
  • Kong SL [2]
  • Kuraoka M [2]
  • Mahant AM [2]
  • Windsor IW [2]
  • Brown JC [1]
  • Bu GL [1]
  • Copeland AM [1]
  • Dai DL [1]
  • Fang X [1]
  • Fang XY [1]
  • Liu Z [1]
  • Newcomb WW [1]
  • Sun C [1]
  • Xie C [1]
  • Yang J [1]
  • Yang JW [1]
  • Zeng M [1]
  • Zeng MS [1]
  • Zhao GX [1]

Author by ORCID

  • Hallberg BM [29]
  • Gustavsson E [29]
  • Jih J [24]
  • Zhou ZH [21]
  • Grunewald K [20]
  • Alvarez-cabrera AL [19]
  • Stevens A [19]
  • Kashyap S [19]
  • Liu Y-T [19]
  • Crofut E [19]
  • Mukherjee P [7]
  • Dai X [7]
  • Bi GQ [5]
  • Liu YT [5]
  • Conway JF [4]
  • Toropova K [3]
  • Garforth SJ [2]
  • Kuraoka M [2]
  • Aschner CB [2]
  • Achkar JM [2]
  • Windsor IW [2]
  • Kelsoe G [2]
  • Kong SL [2]

Journal

  • NUCLEIC ACIDS RES [29]
  • J VIROL [22]
  • CELL [7]
  • NATURE [5]
  • J CLIN INV [2]
  • SCIENCE [2]
  • HLIFE [1]
  • J MOL BIOL [1]

Software

  • CRYOSPARC [47]
  • CTFFIND [15]
  • RELION [13]
  • AUTO3DEM [4]
  • UCSF CHIMERA [2]
  • IMIRS [1]

Microscope

  • FEI TITAN KRIOS [37]
  • TFS KRIOS [28]
  • FEI TECNAI F20 [4]

Electron Source

  • FIELD EMISSION GUN [69]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [32]
  • GATAN K3 6K X 4K [26]
  • GATAN K2 SUMMIT 4K X 4K [7]
  • KODAK SO-163 FILM [4]

External links

  • UniProt [29]
  • PDBe-Kb [26]
  • PDB [25]
  • Pfam [19]
  • InterPro [17]
  • Gene Ontology [16]
  • ChEBI [14]
  • DrugBank [14]
  • ChEMBL [12]
  • EMPIAR [4]
  • AlphaFold DB [2]
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Showing 1 - 10 of 69. Page 1 of 7
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EMD-52135
Download Map
3D View
HSV-1 Origin Binding Protein in complex with double-stranded DNA recognition sequence OriS with 6 basepairs removed from the AT-rich region
Release date: Oct. 22, 2025
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 9hgi
Q-score: 0.5

Gustavsson E, Grunewald K, Elias P, Hallberg BM

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf1029 Pubmed: 41125242 ]

EMD-52136
Download Map
3D View
Focused map of HSV-1 Origin Binding Protein monomer A in complex with double-stranded DNA recognition sequence OriS with 6 basepairs removed from the AT-rich region
Release date: Oct. 22, 2025
Resolution: 2.76 Å
EM Method: Single-particle

Gustavsson E, Grunewald K, Elias P, Hallberg BM

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf1029 Pubmed: 41125242 ]

EMD-52137
Download Map
3D View
Focused map of HSV-1 Origin Binding Protein monomer B in complex with double-stranded DNA recognition sequence OriS with 6 basepairs removed from the AT-rich region
Release date: Oct. 22, 2025
Resolution: 2.74 Å
EM Method: Single-particle

Gustavsson E, Grunewald K, Elias P, Hallberg BM

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf1029 Pubmed: 41125242 ]

EMD-52145
Download Map
3D View
HSV-1 Origin Binding Protein in complex with double-stranded DNA recognition sequence OriS and non-hydrolyzable ATP analog
Release date: Oct. 22, 2025
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 9hgj
Q-score: 0.411

Gustavsson E, Grunewald K, Elias P, Hallberg BM

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf1029 Pubmed: 41125242 ]

EMD-52146
Composite map
Download Map
3D View
Composite map of HSV-1 Origin Binding Protein tetramer in complex with single-stranded DNA recognition sites Box 1 and Box 3 with 10 dT-tail
Release date: Oct. 22, 2025
Resolution: 4.34 Å
EM Method: Single-particle

Gustavsson E, Grunewald K, Elias P, Hallberg BM

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf1029 Pubmed: 41125242 ]

EMD-52147
Download Map
3D View
Consensus map of HSV-1 Origin Binding Protein tetramer in complex with single-stranded DNA recognition sites Box 1 and Box 3 with 10 dT-tail
Release date: Oct. 22, 2025
Resolution: 4.34 Å
EM Method: Single-particle

Gustavsson E, Grunewald K, Elias P, Hallberg BM

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf1029 Pubmed: 41125242 ]

EMD-52148
Download Map
3D View
Focused map of dimer 1 in HSV-1 Origin Binding Protein tetramer in complex with single-stranded DNA recognition sites Box 1 and Box 3 with 10 dT-tail
Release date: Oct. 22, 2025
Resolution: 4.38 Å
EM Method: Single-particle

Gustavsson E, Grunewald K, Elias P, Hallberg BM

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf1029 Pubmed: 41125242 ]

EMD-52149
Download Map
3D View
Focused map of dimer 2 of HSV-1 Origin Binding Protein tetramer in complex with single-stranded DNA recognition sites Box 1 and Box 3 with 10 dT-tail
Release date: Oct. 22, 2025
Resolution: 4.17 Å
EM Method: Single-particle

Gustavsson E, Grunewald K, Elias P, Hallberg BM

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf1029 Pubmed: 41125242 ]

EMD-52150
Download Map
3D View
HSV-1 Origin Binding Protein monomer in complex with hairpin DNA OriS recognition sites Box 1 and Box 3 with 10 dT-tail
Release date: Oct. 22, 2025
Resolution: 2.9 Å
EM Method: Single-particle

Gustavsson E, Grunewald K, Elias P, Hallberg BM

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf1029 Pubmed: 41125242 ]

EMD-70678
Download Map
3D View
Herpes simplex virus type 1 HSV-1 A-capsid pUL6 portal protein, dodecameric complex
Release date: June 11, 2025
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9op4
Q-score: 0.432

Stevens A, Kashyap S, Crofut E, Alvarez-Cabrera AL, Jih J, Liu Y-T, Zhou ZH

J Virol (2025) 99 pp. e0050425-e0050425 [ DOI: doi:10.1128/jvi.00504-25 Pubmed: 40607812 ]

Sort by: Download
Showing 1 - 10 of 69. Page 1 of 7
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [69]

Current status

  • REL [69]

Sample type

  • Complex [58]
  • Protein [38]
  • DNA [20]
  • Ligand [14]
  • Virus [11]
  • Sample [4]

Organism

  • Human herpesvirus 1 [69]
  • Synthetic construct [20]
  • Mus musculus [2]
  • Human herpesvirus 1 [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [69]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [23]
  • ≥ 3Å and < 4Å [17]
  • ≥ 4Å and < 5Å [11]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [7]
  • ≥ 12Å and < 16Å [2]
  • ≥ 16Å and < 20Å [2]

Model molecular weight

  • 100-250 kDa [15]
  • 250-500 kDa [3]
  • 500-1000 kDa [4]
  • 1-2 MDa [2]
  • > 10 MDa [1]

Release Date

  • 2025 [28]
  • 2024 [28]
  • 2023 [2]
  • 2019 [5]
  • 2018 [2]
  • 2012 [4]

Author by name

  • Elias P [29]
  • Grunewald K [29]
  • Gustavsson E [29]
  • Hallberg BM [29]
  • Zhou ZH [26]
  • Jih J [24]
  • Alvarez-cabrera AL [19]
  • Crofut E [19]
  • Crofut EH [19]
  • Kashyap S [19]
  • Liu Y-T [19]
  • Stevens A [19]
  • Hallberg M [10]
  • Abraham J [7]
  • Bian Y [7]
  • Coen DM [7]
  • Dai X [7]
  • Filman DJ [7]
  • Hogle J [7]
  • Hogle JM [7]
  • Mukherjee P [7]
  • Oroszlan G [7]
  • Pan J [7]
  • Shankar S [7]
  • Shekhar M [7]
  • Yang P [7]
  • Yu Z [7]
  • Bi GQ [5]
  • Liu YT [5]
  • Conway JF [4]
  • Homa FL [4]
  • Huffman JB [3]
  • Toropova K [3]
  • Achkar JM [2]
  • Almo SC [2]
  • Aschner CB [2]
  • Cockrell SK [2]
  • Dai XH [2]
  • Garforth SJ [2]
  • Harrison SC [2]
  • Herold BC [2]
  • Kelsoe G [2]
  • Kong SL [2]
  • Kuraoka M [2]
  • Mahant AM [2]
  • Windsor IW [2]
  • Brown JC [1]
  • Bu GL [1]
  • Copeland AM [1]
  • Dai DL [1]
  • Fang X [1]
  • Fang XY [1]
  • Liu Z [1]
  • Newcomb WW [1]
  • Sun C [1]
  • Xie C [1]
  • Yang J [1]
  • Yang JW [1]
  • Zeng M [1]
  • Zeng MS [1]
  • Zhao GX [1]

Author by ORCID

  • Hallberg BM [29]
  • Gustavsson E [29]
  • Jih J [24]
  • Zhou ZH [21]
  • Grunewald K [20]
  • Alvarez-cabrera AL [19]
  • Stevens A [19]
  • Kashyap S [19]
  • Liu Y-T [19]
  • Crofut E [19]
  • Mukherjee P [7]
  • Dai X [7]
  • Bi GQ [5]
  • Liu YT [5]
  • Conway JF [4]
  • Toropova K [3]
  • Garforth SJ [2]
  • Kuraoka M [2]
  • Aschner CB [2]
  • Achkar JM [2]
  • Windsor IW [2]
  • Kelsoe G [2]
  • Kong SL [2]

Journal

  • NUCLEIC ACIDS RES [29]
  • J VIROL [22]
  • CELL [7]
  • NATURE [5]
  • J CLIN INV [2]
  • SCIENCE [2]
  • HLIFE [1]
  • J MOL BIOL [1]

Software

  • CRYOSPARC [47]
  • CTFFIND [15]
  • RELION [13]
  • AUTO3DEM [4]
  • UCSF CHIMERA [2]
  • IMIRS [1]

Microscope

  • FEI TITAN KRIOS [37]
  • TFS KRIOS [28]
  • FEI TECNAI F20 [4]

Electron Source

  • FIELD EMISSION GUN [69]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [32]
  • GATAN K3 6K X 4K [26]
  • GATAN K2 SUMMIT 4K X 4K [7]
  • KODAK SO-163 FILM [4]

External links

  • UniProt [29]
  • PDBe-Kb [26]
  • PDB [25]
  • Pfam [19]
  • InterPro [17]
  • Gene Ontology [16]
  • ChEBI [14]
  • DrugBank [14]
  • ChEMBL [12]
  • EMPIAR [4]
  • AlphaFold DB [2]