Electron Microscopy Data Bank

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molecular_weight_experimental_value:{50 TO *]

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Current Database

Current status

Sample type

Organism

Saccharomyces cerevisiae [32]
Homo sapiens [30]
Human mastadenovirus c [5]
Rattus norvegicus [4]
Pseudomonas virus prd1 [4]
Gallus gallus [4]
Salmonella enterica [4]
Oryctolagus cuniculus [4]
Unidentified adenovirus [3]
Enterobacteria phage t4 [3]
Canine mastadenovirus a [2]
Escherichia virus t7 [2]
Synthetic construct [2]
Escherichia phage k1e [2]
Shigella flexneri [2]
Ovis aries [2]
Suid alphaherpesvirus 1 [1]
Cereibacter sphaeroides [1]
Salmonella phage p22 [1]
Enterobacteria phage fd [1]
(no species) [1]
(no species) [1]
Rice dwarf virus [1]
Sindbis virus [1]
Western equine encephalitis virus [1]
Mouse mammary tumor virus [1]
Methanothermobacter thermautotrophicus [1]
Escherichia virus k1-5 [1]
Escherichia coli [1]
Thermoplasma acidophilum [1]
Mycoplasma genitalium [1]
Severe acute respiratory syndrome coronavirus [1]
Conus kinoshitai [1]
Human mastadenovirus b [1]
Escherichia coli [1]
Macacine gammaherpesvirus 5 [1]
Shewanella oneidensis [1]
Danio rerio [1]
Desulfovibrio vulgaris [1]
Sus scrofa [1]
Bos taurus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Carragher B [23]
Lyumkis D [23]
Potter CS [23]
Bengtson MH [22]
Doamekpor SK [22]
Joazeiro CA [22]
Joazeiro CAP [22]
Lee JW [22]
Lima CD [22]
Petroski MD [22]
Toro TB [22]
Bamford DH [8]
Oksanen HM [8]
Schoehn G [8]
Fabry CM [7]
Li H [7]
Liu J [7]
Ruigrok RW [7]
Bai L [6]
Chen D [6]
Chiu W [6]
Conway JF [6]
Leiman PG [6]
Yun C [6]
Zhao C [6]
Zhao P [6]
Hong C [5]
Jakana J [5]
Liu X [5]
Taylor KA [5]
Zhang X [5]
Carrascosa JL [4]
Chipman PR [4]
Curiel DT [4]
Derosier DJ [4]
Galan JE [4]
Grigorieff N [4]
Hampton CM [4]
Klebl DP [4]
Kubori T [4]
Marlovits TC [4]
Muench SP [4]
Rosa-calatrava M [4]
Rossmann MG [4]
Sobott F [4]
Taylor DW [4]
Thompson RF [4]
Unger VM [4]
Wang Y [4]
Abrescia NG [3]
Abrescia NGA [3]
Andres-pons A [3]
Baldock C [3]
Battisti AJ [3]
Beck M [3]
Bowman VD [3]
Bui KH [3]
Cai Y [3]
Carazo JM [3]
Chen JZ [3]
Collins RF [3]
Cusack S [3]
Dormitzer PR [3]
Gerardy-schahn R [3]
Glavy JS [3]
Goni FM [3]
Hagen W [3]
Harrison SC [3]
Jowitt TA [3]
Kesimer M [3]
Lockhart-cairns MP [3]
Lockhart-lockhart MP [3]
Mesyanzhinov VV [3]
Molineux IJ [3]
Muhlenhoff M [3]
Ori A [3]
Reguera D [3]
Ridley C [3]
San Martin C [3]
Santos-perez I [3]
Scholl D [3]
Settembre EC [3]
Sparks L [3]
Stummeyer K [3]
Subramani DB [3]
Thornton DJ [3]
Valpuesta JM [3]
Wang J [3]
Yu Z [3]
Zhang H [3]
Zhu H [3]
Zubieta C [3]
Von Appen A [3]
Aebi M [2]
Akey CW [2]
Alpizar A [2]
Aoki ST [2]
Beatty MS [2]
Bellamy AR [2]
Beuron F [2]

Author by ORCID

Carragher B [23]
Bengtson MH [22]
Doamekpor SK [22]
Lima CD [22]
Joazeiro CA [22]
Schoehn G [8]
Bamford DH [8]
Oksanen HM [8]
Chiu W [6]
Leiman PG [6]
Marlovits TC [4]
Grigorieff N [4]
Conway JF [4]
Rosa-calatrava M [4]
Hampton CM [4]
Kubori T [4]
Chipman PR [4]
Santos-perez I [3]
Abrescia NG [3]
Andres-pons A [3]
Hagen W [3]
Reguera D [3]
Von Appen A [3]
Thornton DJ [3]
Valpuesta JM [3]
San Martin C [3]
Subramani DB [3]
Ori A [3]
Jowitt TA [3]
Ridley C [3]
Beck M [3]
Cusack S [3]
Lockhart-cairns MP [3]
Bui KH [3]
Baldock C [3]
Glavy JS [3]
Zubieta C [3]
Ueno H [2]
Beatty MS [2]
Liu J [2]
Hallinan GI [2]
Kremer EJ [2]
Yue J [2]
Marabini R [2]
Zyla DS [2]
Murata K [2]
Kostyuchenko VA [2]
Zhang X [2]
Truck J [2]
Aoki ST [2]
Jiang W [2]
Garringer HJ [2]
Weiss GL [2]
Kajava AV [2]
Si X [2]
Stanisich JJ [2]
Shi Y [2]
Glasgow JN [2]
Pilhofer M [2]
Freemont PS [2]
Murata T [2]
Vidal R [2]
Fender P [2]
Martin-benito J [2]
Cai Y [2]
Bock T [2]
Ye Z [2]
Iino R [2]
Fernandez-martinez J [2]
Sauer MM [2]
Li S [2]
Aebi M [2]
Estrozi LF [2]
Mackmull MT [2]
Hoq MR [2]
Glockshuber R [2]
Devuyst O [2]
Wang R [2]
Zhang H [2]
Zhu K [2]
Echeverria I [2]
Lin CW [2]
Yan N [2]
Egelman EH [2]
Mroczek S [1]
Jih J [1]
Byrne DP [1]
Goldstein SA [1]
Ratera M [1]
Mao C [1]
Walters BT [1]
Gonzalez JM [1]
Czarnocki-cieciura M [1]
Moriscot C [1]
Ramlaul K [1]
Liu L [1]
Shivaraju M [1]
Sumarheni S [1]
Sykora UM [1]
Baker TS [1]

Journal

Software

SPIDER, APPION [22]
RELION [14]
CTFFIND [10]
SPIDER [8]
CHIMERA [6]
FREALIGN [6]
MPSA, EMAN, EMAN2 [5]
PROTOMO [5]
CRYOSPARC [4]
CISTEM [3]
IMOD [3]
IMOD, TOM, AV3 [3]
PFT EM3DR [3]
SPIDER, IMAGIC-5, MRC [3]
AUTO3DEM, CTFFIND3 [2]
CTFFIND4 [2]
DYNAMO [2]
EMAN [2]
EMAN2 [2]
IMAGIC [2]
PFT2, EM3DR2 [2]
SPHIRE [2]
SPIDER, EMAN [2]
SPIDER,XMIPP [2]
TOMOCTF [2]
2DX [1]
AMIRA [1]
BUSTER-TNT [1]
CHIMERA, SITUS [1]
COLORES [1]
EMAN, SPIDER [1]
EMAN,SPIDER,XMIPP [1]
EMAN2, RELION [1]
EMFIT [1]
FREALIGN IMIRS [1]
GCTF [1]
IHRSR [1]
IMAGIC, FREALIGN [1]
IMAGIC, SPIDER [1]
IMIRS [1]
PFT EM3DR PFT2 EM3DR2 [1]
PFT2 EM3DR2 [1]
PHOELIX, SUPRIM [1]
PHT2, EM3DR2 [1]
PIF [1]
PURDUE SUITE [1]
SAVR [1]
SITUS [1]
SITUS V.2.0 [1]
SPIDER AND MRC [1]
SPIDER, IMAGIC, MRC [1]
SPIDER, XMIPP [1]
URO SITUS [1]
YUP [1]

Microscope

Electron Source

Film or detector model

External links

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EMDB [132]

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EMD-15162

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3D View

Structure of the human mitochondrial HSPD1 single ring from grids produced in 14ms

Release date: Aug. 31, 2022
Resolution: 6.8 Å
EM Method: Single-particle

Klebl DP, Wang Y, Sobott F, Thompson RF, Muench SP

Front Mol Biosci (2022) 9 pp. 945772-945772 [ Pubmed: 35992264 DOI: doi:10.3389/fmolb.2022.945772 ]

EMD-15167

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Structure of the human mitochondrial HSPD1 single ring in the presence of Methionine

Release date: Aug. 31, 2022
Resolution: 4.2 Å
EM Method: Single-particle

Klebl DP, Wang Y, Sobott F, Thompson RF, Muench SP

Front Mol Biosci (2022) 9 pp. 945772-945772 [ Pubmed: 35992264 DOI: doi:10.3389/fmolb.2022.945772 ]

EMD-15176

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Structure of the human mitochondrial HSPD1 single ring in the presence of ascorbate

Release date: Aug. 31, 2022
Resolution: 4.8 Å
EM Method: Single-particle

Klebl DP, Wang Y, Sobott F, Thompson RF, Muench SP

Front Mol Biosci (2022) 9 pp. 945772-945772 [ Pubmed: 35992264 DOI: doi:10.3389/fmolb.2022.945772 ]

EMD-15178

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Structure of the human mitochondrial HSPD1 single ring blotted but no DTT

Release date: Aug. 31, 2022
Resolution: 3.4 Å
EM Method: Single-particle

Klebl DP, Wang Y, Sobott F, Thompson RF, Muench SP

Front Mol Biosci (2022) 9 pp. 945772-945772 [ Pubmed: 35992264 DOI: doi:10.3389/fmolb.2022.945772 ]

EMD-32825

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Negative stain volume of the mono-GlcNAc-decorated SARS-CoV-2 Spike

Release date: March 16, 2022
Resolution: 14.5 Å
EM Method: Single-particle

Huang HY, Liao HY, Chen X, Wang SW, Cheng CW, Shahed-Al-Mahmud M, Liu YM, Mohapatra A, Chen TH, Lo JM, Wu YM, Ma HH, Chang YH, Tsai HY, Chou YC, Hsueh YP, Tsai CY, Huang PY, Chang SY, Chao TL, Kao HC, Tsai YM, Chen YH, Wu CY, Jan JT, Cheng TR, Lin KI, Ma C, Wong CH

Sci Transl Med (2022) 14 pp. eabm0899-eabm0899 [ DOI: doi:10.1126/scitranslmed.abm0899 Pubmed: 35230146 ]

EMD-24225

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Low resolution, multi-part 3D structure of the isolated yeast NPC

Release date: Jan. 26, 2022
Resolution: 24.0 Å
EM Method: Single-particle

Akey CW, Singh D, Ouch C, Echeverria I, Nudelman I, Varberg JM, Yu Z, Fang F, Shi Y, Wang J, Salzberg D, Song K, Xu C, Gumbart JC, Suslov S, Unruh J, Jaspersen SL, Chait BT, Sali A, Fernandez-Martinez J, Ludtke SJ, Villa E, Rout MP

Cell (2021) [ Pubmed: 34982960 DOI: doi:10.1016/j.cell.2021.12.015 ]

EMD-32268

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Cryo-EM structure of the ghrelin-bound human ghrelin receptor-Go complex

Release date: Jan. 19, 2022
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7w2z
Q-score: 0.564

Qin J, Cai Y, Xu Z, Ming Q, Ji SY, Wu C, Zhang H, Mao C, Shen DD, Hirata K, Ma Y, Yan W, Zhang Y, Shao Z

Nat Commun (2022) 13 pp. 300-300 [ DOI: doi:10.1038/s41467-022-27975-9 Pubmed: 35027551 ]

EMD-31987

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Cryo-EM structure of the hexameric plasma membrane H -ATPase in the autoinhibited state pH 7.4, C6 symmetry

Release date: Nov. 17, 2021
Resolution: 2.9 Å
EM Method: Single-particle

Zhao P, Zhao C, Chen D, Yun C, Li H, Bai L

Nat Commun (2021) [ DOI: doi:10.1038/s41467-021-26782-y ]

EMD-31989

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3D View

Cryo-EM structure of the hexameric plasma membrane H -ATPase in the active state pH 6.0, BeF3-, conformation 1, C6 symmetry

Release date: Nov. 17, 2021
Resolution: 3.4 Å
EM Method: Single-particle

Zhao P, Zhao C, Chen D, Yun C, Li H, Bai L

Nat Commun (2021) [ DOI: doi:10.1038/s41467-021-26782-y ]

EMD-31990

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3D View

Cryo-EM structure of the hexameric plasma membrane H -ATPase in the autoinhibited state pH 6.0, BeF3-, conformation 2, C1 symmetry

Release date: Nov. 17, 2021
Resolution: 3.8 Å
EM Method: Single-particle

Zhao P, Zhao C, Chen D, Yun C, Li H, Bai L

Nat Commun (2021) [ DOI: doi:10.1038/s41467-021-26782-y ]

Sort by: Download

Showing 1 - 10 of 132. Page 1 of 14

Display:

Statistics

Download

Select database:

EMDB [132]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Saccharomyces cerevisiae [32]
Homo sapiens [30]
Human mastadenovirus c [5]
Rattus norvegicus [4]
Pseudomonas virus prd1 [4]
Gallus gallus [4]
Salmonella enterica [4]
Oryctolagus cuniculus [4]
Unidentified adenovirus [3]
Enterobacteria phage t4 [3]
Canine mastadenovirus a [2]
Escherichia virus t7 [2]
Synthetic construct [2]
Escherichia phage k1e [2]
Shigella flexneri [2]
Ovis aries [2]
Suid alphaherpesvirus 1 [1]
Cereibacter sphaeroides [1]
Salmonella phage p22 [1]
Enterobacteria phage fd [1]
(no species) [1]
(no species) [1]
Rice dwarf virus [1]
Sindbis virus [1]
Western equine encephalitis virus [1]
Mouse mammary tumor virus [1]
Methanothermobacter thermautotrophicus [1]
Escherichia virus k1-5 [1]
Escherichia coli [1]
Thermoplasma acidophilum [1]
Mycoplasma genitalium [1]
Severe acute respiratory syndrome coronavirus [1]
Conus kinoshitai [1]
Human mastadenovirus b [1]
Escherichia coli [1]
Macacine gammaherpesvirus 5 [1]
Shewanella oneidensis [1]
Danio rerio [1]
Desulfovibrio vulgaris [1]
Sus scrofa [1]
Bos taurus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Carragher B [23]
Lyumkis D [23]
Potter CS [23]
Bengtson MH [22]
Doamekpor SK [22]
Joazeiro CA [22]
Joazeiro CAP [22]
Lee JW [22]
Lima CD [22]
Petroski MD [22]
Toro TB [22]
Bamford DH [8]
Oksanen HM [8]
Schoehn G [8]
Fabry CM [7]
Li H [7]
Liu J [7]
Ruigrok RW [7]
Bai L [6]
Chen D [6]
Chiu W [6]
Conway JF [6]
Leiman PG [6]
Yun C [6]
Zhao C [6]
Zhao P [6]
Hong C [5]
Jakana J [5]
Liu X [5]
Taylor KA [5]
Zhang X [5]
Carrascosa JL [4]
Chipman PR [4]
Curiel DT [4]
Derosier DJ [4]
Galan JE [4]
Grigorieff N [4]
Hampton CM [4]
Klebl DP [4]
Kubori T [4]
Marlovits TC [4]
Muench SP [4]
Rosa-calatrava M [4]
Rossmann MG [4]
Sobott F [4]
Taylor DW [4]
Thompson RF [4]
Unger VM [4]
Wang Y [4]
Abrescia NG [3]
Abrescia NGA [3]
Andres-pons A [3]
Baldock C [3]
Battisti AJ [3]
Beck M [3]
Bowman VD [3]
Bui KH [3]
Cai Y [3]
Carazo JM [3]
Chen JZ [3]
Collins RF [3]
Cusack S [3]
Dormitzer PR [3]
Gerardy-schahn R [3]
Glavy JS [3]
Goni FM [3]
Hagen W [3]
Harrison SC [3]
Jowitt TA [3]
Kesimer M [3]
Lockhart-cairns MP [3]
Lockhart-lockhart MP [3]
Mesyanzhinov VV [3]
Molineux IJ [3]
Muhlenhoff M [3]
Ori A [3]
Reguera D [3]
Ridley C [3]
San Martin C [3]
Santos-perez I [3]
Scholl D [3]
Settembre EC [3]
Sparks L [3]
Stummeyer K [3]
Subramani DB [3]
Thornton DJ [3]
Valpuesta JM [3]
Wang J [3]
Yu Z [3]
Zhang H [3]
Zhu H [3]
Zubieta C [3]
Von Appen A [3]
Aebi M [2]
Akey CW [2]
Alpizar A [2]
Aoki ST [2]
Beatty MS [2]
Bellamy AR [2]
Beuron F [2]

Author by ORCID

Carragher B [23]
Bengtson MH [22]
Doamekpor SK [22]
Lima CD [22]
Joazeiro CA [22]
Schoehn G [8]
Bamford DH [8]
Oksanen HM [8]
Chiu W [6]
Leiman PG [6]
Marlovits TC [4]
Grigorieff N [4]
Conway JF [4]
Rosa-calatrava M [4]
Hampton CM [4]
Kubori T [4]
Chipman PR [4]
Santos-perez I [3]
Abrescia NG [3]
Andres-pons A [3]
Hagen W [3]
Reguera D [3]
Von Appen A [3]
Thornton DJ [3]
Valpuesta JM [3]
San Martin C [3]
Subramani DB [3]
Ori A [3]
Jowitt TA [3]
Ridley C [3]
Beck M [3]
Cusack S [3]
Lockhart-cairns MP [3]
Bui KH [3]
Baldock C [3]
Glavy JS [3]
Zubieta C [3]
Ueno H [2]
Beatty MS [2]
Liu J [2]
Hallinan GI [2]
Kremer EJ [2]
Yue J [2]
Marabini R [2]
Zyla DS [2]
Murata K [2]
Kostyuchenko VA [2]
Zhang X [2]
Truck J [2]
Aoki ST [2]
Jiang W [2]
Garringer HJ [2]
Weiss GL [2]
Kajava AV [2]
Si X [2]
Stanisich JJ [2]
Shi Y [2]
Glasgow JN [2]
Pilhofer M [2]
Freemont PS [2]
Murata T [2]
Vidal R [2]
Fender P [2]
Martin-benito J [2]
Cai Y [2]
Bock T [2]
Ye Z [2]
Iino R [2]
Fernandez-martinez J [2]
Sauer MM [2]
Li S [2]
Aebi M [2]
Estrozi LF [2]
Mackmull MT [2]
Hoq MR [2]
Glockshuber R [2]
Devuyst O [2]
Wang R [2]
Zhang H [2]
Zhu K [2]
Echeverria I [2]
Lin CW [2]
Yan N [2]
Egelman EH [2]
Mroczek S [1]
Jih J [1]
Byrne DP [1]
Goldstein SA [1]
Ratera M [1]
Mao C [1]
Walters BT [1]
Gonzalez JM [1]
Czarnocki-cieciura M [1]
Moriscot C [1]
Ramlaul K [1]
Liu L [1]
Shivaraju M [1]
Sumarheni S [1]
Sykora UM [1]
Baker TS [1]

Journal

Software

SPIDER, APPION [22]
RELION [14]
CTFFIND [10]
SPIDER [8]
CHIMERA [6]
FREALIGN [6]
MPSA, EMAN, EMAN2 [5]
PROTOMO [5]
CRYOSPARC [4]
CISTEM [3]
IMOD [3]
IMOD, TOM, AV3 [3]
PFT EM3DR [3]
SPIDER, IMAGIC-5, MRC [3]
AUTO3DEM, CTFFIND3 [2]
CTFFIND4 [2]
DYNAMO [2]
EMAN [2]
EMAN2 [2]
IMAGIC [2]
PFT2, EM3DR2 [2]
SPHIRE [2]
SPIDER, EMAN [2]
SPIDER,XMIPP [2]
TOMOCTF [2]
2DX [1]
AMIRA [1]
BUSTER-TNT [1]
CHIMERA, SITUS [1]
COLORES [1]
EMAN, SPIDER [1]
EMAN,SPIDER,XMIPP [1]
EMAN2, RELION [1]
EMFIT [1]
FREALIGN IMIRS [1]
GCTF [1]
IHRSR [1]
IMAGIC, FREALIGN [1]
IMAGIC, SPIDER [1]
IMIRS [1]
PFT EM3DR PFT2 EM3DR2 [1]
PFT2 EM3DR2 [1]
PHOELIX, SUPRIM [1]
PHT2, EM3DR2 [1]
PIF [1]
PURDUE SUITE [1]
SAVR [1]
SITUS [1]
SITUS V.2.0 [1]
SPIDER AND MRC [1]
SPIDER, IMAGIC, MRC [1]
SPIDER, XMIPP [1]
URO SITUS [1]
YUP [1]

Microscope

Electron Source

Film or detector model

External links