Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!
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Current Database
- EMDB [2047]
Current status
- REL [2047]
Sample type
- Sample [1434]
- Protein [1377]
- Complex [688]
- Virus [172]
- Cellular component [126]
- RNA [92]
- Ligand [88]
- DNA [65]
- Other [15]
- Tissue [3]
- Em label [1]
Organism
- Homo sapiens [463]
- Saccharomyces cerevisiae [228]
- Escherichia coli [207]
- Bos taurus [121]
- Synthetic construct [104]
- Mus musculus [85]
- Rattus norvegicus [66]
- Oryctolagus cuniculus [35]
- Human immunodeficiency virus 1 [34]
- Severe acute respiratory syndrome coronavirus [32]
- Thermus thermophilus [24]
- Ovis aries [24]
- Methanococcus maripaludis [23]
- Drosophila melanogaster [21]
- Gallus gallus [21]
- Bacillus subtilis [17]
- Plasmodium falciparum [17]
- Sus scrofa [17]
- Escherichia phage ms2 [16]
- Escherichia coli [16]
- Phomopsis amygdali [15]
- Simian-human immunodeficiency virus [14]
- Salmonella enterica [13]
- Hepatitis b virus [12]
- Bacillus phage spp1 [12]
- Avian infectious bursal disease virus [12]
- Griffithsia pacifica [12]
- Streptococcus pneumoniae [11]
- Streptomyces venezuelae [11]
- Geobacillus stearothermophilus [10]
- Danio rerio [10]
- Simian virus 40 [9]
- Murine leukemia virus [9]
- Methanocaldococcus jannaschii [9]
- Thermoplasma acidophilum [9]
- Torpedo marmorata [9]
- Influenza d virus [8]
- Human immunodeficiency virus [8]
- Arabidopsis thaliana [8]
- Xenopus laevis [8]
- Salmonella phage p22 [7]
- Enterobacteria phage m13 [7]
- Escherichia phage ms2 [7]
- Staphylococcus aureus [7]
- Mycobacterium tuberculosis [7]
- Mycolicibacterium smegmatis [7]
- Photorhabdus luminescens [7]
- Schizosaccharomyces pombe [7]
- Neurospora crassa [7]
- Streptomyces coelicolor [6]
- Enterobacteria phage t4 [6]
- Bacillus phage phi29 [6]
- Campylobacter jejuni [6]
- Porcine epidemic diarrhea virus [6]
- Pseudomonas aeruginosa [6]
- Chlamydomonas reinhardtii [6]
- Spinacia oleracea [6]
- Manduca sexta [6]
- Bovine papillomavirus [5]
- Enterovirus c [5]
- Brome mosaic virus [5]
- Acidianus tengchongensis [5]
- Alkalihalobacillus halodurans [5]
- Vibrio cholerae [5]
- Chikungunya virus [5]
- Vibrio cholerae [5]
- Adeno-associated dependoparvovirus b [5]
- Camelus dromedarius [5]
- Pseudomonas virus prd1 [4]
- Pseudoalteromonas phage pm2 [4]
- Tobacco mosaic virus [4]
- Barley stripe mosaic virus [4]
- Helicobacter pylori [4]
- Thermus thermophilus [4]
- Lactococcus phage tp901-1 [4]
- Caenorhabditis elegans [4]
- Komagataella phaffii [4]
- Desulfovibrio vulgaris [4]
- Sus scrofa [4]
- Rosellinia necatrix quadrivirus 1 [3]
- Human herpesvirus 1 [3]
- Escherichia phage mu [3]
- Pseudomonas phage phi6 [3]
- Dengue virus [3]
- Enterovirus c [3]
- Red clover necrotic mosaic virus [3]
- Rosellinia necatrix megabirnavirus 1 [3]
- Lactococcus lactis [3]
- Methanothermobacter marburgensis [3]
- Mycoplasma genitalium [3]
- Mycoplasma pneumoniae [3]
- Escherichia coli [3]
- Pyrococcus furiosus [3]
- Saccharolobus solfataricus [3]
- Kelp fly virus [3]
- Escherichia phage k1e [3]
- Haliotis diversicolor [3]
- Enterovirus a [3]
- Grammostola rosea [3]
- Dictyostelium discoideum [3]
EM Method
- Single-particle [1763]
- Helical reconstruction [94]
- Subtomogram averaging [90]
- Tomography [83]
- Electron Crystallography [17]
Resolution
- < 2Å [6]
- ≥ 2Å and < 3Å [45]
- ≥ 3Å and < 4Å [190]
- ≥ 4Å and < 5Å [142]
- ≥ 5Å and < 6Å [58]
- ≥ 6Å and < 8Å [201]
- ≥ 8Å and < 12Å [301]
- ≥ 12Å and < 16Å [213]
- ≥ 16Å and < 20Å [240]
- ≥ 20Å and < 30Å [437]
- ≥ 30Å [178]
Model molecular weight
- 0-50 kDa [14]
- 50-100 kDa [16]
- 100-250 kDa [67]
- 250-500 kDa [68]
- 500-1000 kDa [102]
- 1-2 MDa [63]
- 2-5 MDa [57]
- 5-10 MDa [19]
- > 10 MDa [11]
Release Date
- 2022 [114]
- 2021 [147]
- 2020 [113]
- 2019 [85]
- 2018 [47]
- 2017 [74]
- 2016 [206]
- 2015 [251]
- 2014 [187]
- 2013 [194]
- 2012 [130]
- 2011 [104]
- 2010 [87]
- 2009 [75]
- 2008 [29]
- 2007 [66]
- 2006 [75]
- 2005 [28]
- 2004 [17]
- 2003 [18]
Author by name
- Chiu W [97]
- Walker JE [79]
- Montgomery MG [77]
- Spikes TE [69]
- Saibil HR [63]
- Carragher B [59]
- Potter CS [59]
- Ward AB [58]
- Ren G [54]
- Zhang X [52]
- Orlova EV [51]
- Nogales E [44]
- Ludtke SJ [42]
- Mielke T [42]
- Wang HW [40]
- Zhang J [38]
- Clare DK [37]
- Beckmann R [36]
- Liu Y [36]
- Cheng Y [35]
- Zhang K [35]
- Lei J [33]
- Wilson IA [33]
- Yu Y [33]
- De Val N [33]
- Berninghausen O [32]
- Schmid MF [32]
- Chen Y [31]
- Grigorieff N [31]
- Krauss RM [31]
- Lei D [31]
- Scheres SHW [31]
- Liu J [30]
- Shi Y [30]
- Frank J [29]
- Gilbert RJC [29]
- Krauss R [29]
- Kuang Y [29]
- Kuang YL [29]
- Jakana J [28]
- Zhang L [28]
- Zhang Y [28]
- Gao N [27]
- Llorca O [27]
- Li X [26]
- Wendler P [26]
- Cramer P [25]
- Campbell MG [24]
- Heddle JG [24]
- Lander GC [24]
- Marletta MA [24]
- Scheres SH [24]
- Underbakke ES [24]
- Bai XC [23]
- Biela AP [23]
- Wang Y [23]
- Wang Z [23]
- Rossmann MG [22]
- Wang L [22]
- Xu Y [22]
- Bhushan S [21]
- Guo Q [21]
- Liu X [21]
- Murakami K [21]
- Schulten K [21]
- Skiniotis G [21]
- Wang J [21]
- Zhang Z [21]
- Armache JP [20]
- Liu JJ [20]
- Niu CY [20]
- Plitzko JM [20]
- Stark H [20]
- Stuart DI [20]
- Barford D [19]
- Penczek PA [19]
- Rubinstein JL [19]
- Stagg SM [19]
- Sui SF [19]
- Wilson DN [19]
- Zhao J [19]
- Agard DA [18]
- Baumeister W [18]
- Breese Z [18]
- Cambillau C [18]
- Carrascosa JL [18]
- Caston JR [18]
- Cheng A [18]
- Deng H [18]
- Frydman J [18]
- Gilbert RJ [18]
- Goto S [18]
- Himeno H [18]
- Houry WA [18]
- Kampjut D [18]
- Kravchuk V [18]
- Luque D [18]
- Muto A [18]
- Petrova O [18]
- Sazanov L [18]
Author by ORCID
- Walker JE [79]
- Montgomery MG [77]
- Chiu W [77]
- Spikes TE [69]
- Orlova EV [51]
- Ren G [40]
- Ludtke SJ [39]
- Schmid MF [32]
- Cheng Y [29]
- Clare DK [28]
- Llorca O [26]
- Gao N [25]
- Scheres SH [24]
- Carragher B [24]
- Campbell MG [24]
- Underbakke ES [24]
- Lander GC [24]
- Bai XC [23]
- Grigorieff N [22]
- Skiniotis G [21]
- Armache JP [20]
- Murakami K [20]
- Bhushan S [20]
- Sui SF [19]
- Barford D [19]
- Stagg SM [19]
- Stuart DI [19]
- Deng H [18]
- Kravchuk V [18]
- Sazanov L [18]
- Plitzko JM [18]
- Zhang J [18]
- Wendler P [18]
- Frydman J [18]
- Caston JR [18]
- Liu J [17]
- Van Eeuwen T [17]
- Wilson DN [17]
- Grob P [16]
- Walz T [16]
- Akhouri RR [15]
- Julien JP [15]
- Li N [15]
- Christianson DW [15]
- Skoglund U [15]
- Ramakrishnan V [15]
- Furusho H [15]
- Topf M [15]
- Rubinstein JL [15]
- Fronzes R [15]
- Tegunov D [14]
- Jarrold MF [14]
- Robinson CV [14]
- Raunser S [14]
- Scheres SHW [14]
- Liu Y [14]
- Rivera-calzada A [14]
- Lee JH [13]
- Faylo JL [13]
- Zhang X [13]
- Loerke J [13]
- Quispe J [13]
- Freemont PS [13]
- Carroni M [13]
- Yang J [13]
- Moeller A [13]
- Subramaniam S [13]
- Reguera D [12]
- Chapman MS [12]
- Hoenger A [12]
- Gilbert RJ [12]
- Stahlberg H [12]
- Zhang J [12]
- Schoehn G [12]
- Ma J [12]
- Malet H [12]
- Rice WJ [12]
- Bamford DH [12]
- Leschziner AE [12]
- Shi Y [12]
- Barnes CO [12]
- Mata CP [12]
- Scheerer P [11]
- Behrmann E [11]
- Ward AB [11]
- Valpuesta JM [11]
- Mao Y [11]
- Zlotnick A [11]
- Peng R [11]
- Burger J [11]
- Plaschka C [11]
- Taylor DW [11]
- Schultz P [11]
- Zhang K [11]
- Martin A [11]
- Hakansson K [11]
- Chipman PR [11]
- Villa E [11]
- Hansen DA [11]
- Cramer P [10]
Journal
- PNAS [286]
- NATURE [220]
- STRUCTURE [139]
- NAT COMMUN [106]
- J MOL BIOL [101]
- SCIENCE [100]
- NAT STRUCT MOL BIOL [99]
- CELL [91]
- J BIOL CHEM [75]
- MOL CELL [74]
- J VIROL [73]
- ELIFE [70]
- EMBO J [57]
- TO BE PUBLISHED [49]
- PLOS PATHOG [39]
- NUCLEIC ACIDS RES [38]
- CELL REP [37]
- J STRUCT BIOL [27]
- SCI ADV [24]
- J CELL BIOL [21]
- BIOCHEMISTRY [17]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [17]
- NAT METHODS [17]
- COMMUN MATER [16]
- PLOS BIOL [16]
- FRONT MOL BIOSCI [15]
- PLOS ONE [14]
- BIORXIV [13]
- SCI REP [13]
- J LIPID RES [12]
- PROTEIN CELL [12]
- EMBO REP [11]
- OPEN BIOL [11]
- CELL RES [10]
- NAT MICROBIOL [10]
- BIOCHIM BIOPHYS ACTA [9]
- PHILOS TRANS R SOC LOND, B, BIOL SCI [8]
- FEBS LETT [7]
- GENES DEV [7]
- BIOCHEM J [6]
- DEV CELL [6]
- COMMUN BIOL [5]
- RNA [5]
- CELL CYCLE [4]
- J BACTERIOL [4]
- METHODS [4]
- NAT CELL BIOL [4]
- NAT NANOTECHNOL [4]
- PROTEIN SCI [4]
- SMALL [4]
- ACTA CRYSTALLOGR D STRUCT BIOL [3]
- CELL DISCOV [3]
- IMMUNITY [3]
- IUCRJ [3]
- NAT PLANTS [3]
- PHYS BIOL [3]
- ACS CHEM BIOL [2]
- ACTA NEUROPATHOL [2]
- ADV MATER WEINHEIM [2]
- ARCH BIOCHEM BIOPHYS [2]
- BIOPOLYMERS [2]
- CELL DEATH DIFFER. [2]
- J AM CHEM SOC [2]
- J CELL SCI [2]
- MOL MICROBIOL [2]
- NANO LETTERS [2]
- NAT CHEM BIOL [2]
- TRANSCRIPTION [2]
- ACS CENT SCI [1]
- AIDS RES HUM RETROVIRUSES [1]
- ANGEW CHEM INT ED ENGL [1]
- BIOPHYS J [1]
- BLOOD [1]
- CELL HOST MICROBE [1]
- CURR BIOL [1]
- FEBS J [1]
- FRONT CELL INFECT MICROBIOL [1]
- FRONT MICROBIOL [1]
- INT J BIOL MACROMOL [1]
- J BIOCHEM [1]
- J IMMUNOL [1]
- J VIS EXP [1]
- MICRO PUBL BIOL [1]
- MOL IMMUNOL [1]
- MOL PHARMACOL [1]
- MOL SYST BIOL [1]
- NAT CHEM [1]
- NAT IMMUNOL [1]
- NAT MED [1]
- NEURON [1]
- PHOTOCHEM PHOTOBIOL SCI [1]
- SCI TRANSL MED [1]
- VIROLOGY [1]
Software
- RELION [426]
- CHIMERA [226]
- SPIDER [221]
- CTFFIND [184]
- EMAN [141]
- CRYOSPARC [105]
- EMAN2 [67]
- IMAGIC [56]
- XMIPP [52]
- GCTF [50]
- FREALIGN [36]
- SITUS [34]
- IMAGIC, SPIDER [33]
- MDFF [26]
- EMAN2, SPARX [25]
- WARP [24]
- URO [23]
- CTFFIND3, RELION [22]
- IMOD [22]
- EMAN1 [18]
- SPARX [17]
- EMAN1, EMAN2 [16]
- COMET [15]
- UCSF CHIMERA [15]
- IPET, FETR, SPIDER, IMOD, EMAN, AND, EMAN2 [14]
- SPIDER, IMAGIC [14]
- IPET [12]
- O [12]
- SPIDER, RELION [12]
- TOMOCTF [12]
- CHIMERA, MDFF [11]
- CHIMERA, SITUS [11]
- SIGNATURE, CTFFIND3, SPIDER, SPARX [11]
- AUTO3DEM [10]
- IMAGIC-5, SPIDER [10]
- BSOFT [9]
- CISTEM [9]
- EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [9]
- IHRSR [9]
- IMAGIC-5 [9]
- PROTOMO [9]
- TOM, TOOLBOX, BSOFT, XMIPP [9]
- MOLREP, CHIMERA [8]
- MRC [8]
- MRC, IMAGIC, SPIDER [8]
- RELION, FREALIGN [8]
- SPIDER, IHRSR [8]
- CHIMERA, COOT [7]
- DIREX [7]
- EMAN, XMIPP [7]
- EMAN2, IMAGIC, RELION-1.3 [7]
- EMFIT [7]
- FLEX-EM [7]
- GAP [7]
- IMOD, EMAN2 [7]
- SPIDER, EMAN [7]
- SPIDER, TOM_TOOLBOX [7]
- CHIMERA, CNS [6]
- CHIMERA, FLEX-EM, NAMD2.6 [6]
- EMAN, SPARX [6]
- EMAN, SPIDER [6]
- EMAN1.8 [6]
- EMAN2, AND, SPARX [6]
- EMAN2, RELION [6]
- IMAGIC, FREALIGN [6]
- IMOD, PRIISM/IVE [6]
- PHOELIX [6]
- RELION, BOXER, EMAN2, CFTFIND, SPIDER [6]
- SPIDER, EMAN2, RELION [6]
- XMIPP, ML, TOMO [6]
- XMIPP, SPIDER [6]
- EMAN2 SPARX [5]
- EMAN2, RELION1.3 [5]
- IMAGIC, EMAN, FREALIGN, SPIDER, GAP [5]
- MPSA, EMAN, EMAN2 [5]
- SPIDER XMIPP [5]
- SPIDER, FREALIGN [5]
- SPIDER,XMIPP,IHRSR [5]
- SPRING [5]
- 2DX [4]
- CHIMERA, FLEX-EM [4]
- COOT [4]
- CTFFIND4 [4]
- CTFFIND4, RELION [4]
- EMAN, FREALIGN [4]
- EMAN, IMAGIC, SPIDER [4]
- EMAN2, SPIDER, XMIPP [4]
- EMBL, P3DR [4]
- IMAGIC, SPIDER, EMAN [4]
- IPET, AND, FETR [4]
- MANUAL [4]
- PHOELIX, SUPRIM [4]
- RELION1.4 [4]
- SPARX, EMAN2, FREALIGN [4]
- SPIDER AND GAP [4]
- SPIDER PACKAGE [4]
- SPIDER, EMAN, IHRSR, BSOFT [4]
- SPIDER, EMAN2 [4]
- SPIDER,EMAN1.9 [4]
- CHIMERA, ROSETTA [3]
Microscope
- FEI TITAN KRIOS [669]
- FEI TECNAI F20 [404]
- FEI POLARA 300 [157]
- FEI/PHILIPS CM200FEG [87]
- FEI TECNAI 12 [82]
- JEOL 2010F [66]
- FEI TECNAI 20 [62]
- FEI TECNAI SPIRIT [59]
- FEI TECNAI F30 [50]
- ZEISS LIBRA120PLUS [45]
- JEOL 3200FSC [41]
- FEI TALOS ARCTICA [28]
- JEOL 2200FS [27]
- FEI/PHILIPS CM300FEG/T [25]
- JEOL 2100F [22]
- JEOL 1230 [21]
- TFS GLACIOS [21]
- JEOL 4000EX [17]
- FEI/PHILIPS CM200FEG/ST [13]
- JEOL 1200EXII [13]
- JEOL 2100 [13]
- JEOL 3200FS [13]
- JEOL 3000SFF [10]
- OTHER [10]
- FEI/PHILIPS CM200T [9]
- JEOL 1200EX [9]
- FEI TECNAI ARCTICA [8]
- FEI TITAN [8]
- TFS KRIOS [8]
- FEI/PHILIPS CM120T [7]
- FEI TECNAI 10 [6]
- JEOL 1400 [6]
- JEOL 2000EX [6]
- JEOL KYOTO-3000SFF [5]
- TFS TALOS [5]
- JEOL 100CX [4]
- FEI/PHILIPS CM200FEG/UT [3]
- FEI/PHILIPS CM300FEG/ST [3]
- JEOL 2200FSC [3]
- FEI/PHILIPS CM10 [2]
- FEI/PHILIPS CM12 [2]
- HITACHI H-9500SD [2]
- JEOL 2010HT [2]
- JEOL 2010UHR [2]
- FEI TECNAI SPHERA [1]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- FEI/PHILIPS EM420 [1]
- JEOL 1200 [1]
- JEOL 2000EXII [1]
- JEOL 2010 [1]
- JEOL CRYO ARM 300 [1]
- ZEISS LEO912 [1]
Electron Source
- FIELD EMISSION GUN [1705]
- LAB6 [258]
- TUNGSTEN HAIRPIN [77]
- OTHER [8]
Film or detector model
- KODAK SO-163 FILM [417]
- GATAN ULTRASCAN 4000 4K X 4K [301]
- GATAN K2 SUMMIT 4K X 4K [199]
- FEI FALCON II 4K X 4K [158]
- GATAN K2 QUANTUM 4K X 4K [121]
- TVIPS TEMCAM-F416 4K X 4K [110]
- GENERIC GATAN 4K X 4K [80]
- GATAN K2 4K X 4K [78]
- GATAN K3 6K X 4K [68]
- FEI EAGLE 4K X 4K [67]
- FEI FALCON III 4K X 4K [54]
- GATAN K3 BIOQUANTUM 6K X 4K [44]
- TVIPS TEMCAM-F415 4K X 4K [40]
- GENERIC CCD [31]
- TVIPS TEMCAM-F816 8K X 8K [26]
- FEI FALCON I 4K X 4K [22]
- OTHER [20]
- GENERIC TVIPS 4K X 4K [19]
- GENERIC GATAN [18]
- GATAN MULTISCAN [17]
- GATAN ULTRASCAN 1000 2K X 2K [16]
- FEI EAGLE 2K X 2K [13]
- DIRECT ELECTRON DE-20 5K X 3K [12]
- KODAK 4489 FILM [12]
- FEI CETA 4K X 4K [11]
- DIRECT ELECTRON DE-12 4K X 3K [10]
- GENERIC CCD 2K X 2K [7]
- GATAN ORIUS SC200 2K X 2K [6]
- GENERIC FILM [6]
- TVIPS TEMCAM-F224 2K X 2K [6]
- FEI FALCON IV 4K X 4K [5]
- GATAN ULTRASCAN 10000 10K X 10K [3]
- GENERIC TVIPS [3]
- DIRECT ELECTRON DE-16 4K X 4K [2]
- SIA 15C 3K X 3K [2]
- AGFA SCIENTA FILM [1]
- DIRECT ELECTRON DE-10 5K X 4K [1]
- GATAN K2 BASE 4K X 4K [1]
- GATAN ORIUS SC1000 4K X 2.7K [1]
- GENERIC GATAN 2K X 2K [1]
- GENERIC IMAGE PLATES [1]
- PROSCAN TEM-PIV 2K X 2K [1]
External links
- UniProt [520]
- PDBe-Kb [496]
- AlphaFold DB [463]
- PDB [429]
- InterPro [155]
- Gene Ontology [125]
- EMPIAR [80]
- Pfam [38]
- ChEBI [30]
- DrugBank [29]
- ChEMBL [27]
- Complex Portal [19]
- SCOP2 [1]
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 7zq9
Q-score: 0.609
Naschberger A, Mosebach L, Tobiasson V, Kuhlgert S, Scholz M, Perez-Boerema A, Ho TTH, Vidal-Meireles A, Takahashi Y, Hippler M, Amunts A
Nat Plants (2022) 8 pp. 1191-1201 [ Pubmed: 36229605 DOI: doi:10.1038/s41477-022-01253-4 ]
Resolution: 2.31 Å
EM Method: Single-particle
Fitted PDBs: 7zqc
Q-score: 0.675
Naschberger A, Mosebach L, Tobiasson V, Kuhlgert S, Scholz M, Perez-Boerema A, Ho TTH, Vidal-Meireles A, Takahashi Y, Hippler M, Amunts A
Nat Plants (2022) 8 pp. 1191-1201 [ Pubmed: 36229605 DOI: doi:10.1038/s41477-022-01253-4 ]
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 7zqd
Q-score: 0.559
Naschberger A, Mosebach L, Tobiasson V, Kuhlgert S, Scholz M, Perez-Boerema A, Ho TTH, Vidal-Meireles A, Takahashi Y, Hippler M, Amunts A
Nat Plants (2022) 8 pp. 1191-1201 [ Pubmed: 36229605 DOI: doi:10.1038/s41477-022-01253-4 ]
Resolution: 6.1 Å
EM Method: Single-particle
Faylo JL, van Eeuwen T, Gupta K, Murakami K, Christianson DW
Biochemistry (2022) 61 pp. 2417-2430 [ Pubmed: 36227241 DOI: doi:10.1021/acs.biochem.2c00509 ]
Resolution: 6.5 Å
EM Method: Single-particle
Faylo JL, van Eeuwen T, Gupta K, Murakami K, Christianson DW
Biochemistry (2022) 61 pp. 2417-2430 [ Pubmed: 36227241 DOI: doi:10.1021/acs.biochem.2c00509 ]
Resolution: 6.9 Å
EM Method: Single-particle
Faylo JL, van Eeuwen T, Gupta K, Murakami K, Christianson DW
Biochemistry (2022) 61 pp. 2417-2430 [ Pubmed: 36227241 DOI: doi:10.1021/acs.biochem.2c00509 ]
Resolution: 7.9 Å
EM Method: Single-particle
Faylo JL, van Eeuwen T, Gupta K, Murakami K, Christianson DW
Biochemistry (2022) 61 pp. 2417-2430 [ Pubmed: 36227241 DOI: doi:10.1021/acs.biochem.2c00509 ]
Resolution: 7.9 Å
EM Method: Single-particle
Faylo JL, van Eeuwen T, Gupta K, Murakami K, Christianson DW
Biochemistry (2022) 61 pp. 2417-2430 [ Pubmed: 36227241 DOI: doi:10.1021/acs.biochem.2c00509 ]
Resolution: 7.8 Å
EM Method: Single-particle
Faylo JL, van Eeuwen T, Gupta K, Murakami K, Christianson DW
Biochemistry (2022) 61 pp. 2417-2430 [ Pubmed: 36227241 DOI: doi:10.1021/acs.biochem.2c00509 ]
Resolution: 8.0 Å
EM Method: Single-particle
Faylo JL, van Eeuwen T, Gupta K, Murakami K, Christianson DW
Biochemistry (2022) 61 pp. 2417-2430 [ Pubmed: 36227241 DOI: doi:10.1021/acs.biochem.2c00509 ]
Filter By
Current Database
- EMDB [2047]
Current status
- REL [2047]
Sample type
- Sample [1434]
- Protein [1377]
- Complex [688]
- Virus [172]
- Cellular component [126]
- RNA [92]
- Ligand [88]
- DNA [65]
- Other [15]
- Tissue [3]
- Em label [1]
Organism
- Homo sapiens [463]
- Saccharomyces cerevisiae [228]
- Escherichia coli [207]
- Bos taurus [121]
- Synthetic construct [104]
- Mus musculus [85]
- Rattus norvegicus [66]
- Oryctolagus cuniculus [35]
- Human immunodeficiency virus 1 [34]
- Severe acute respiratory syndrome coronavirus [32]
- Thermus thermophilus [24]
- Ovis aries [24]
- Methanococcus maripaludis [23]
- Drosophila melanogaster [21]
- Gallus gallus [21]
- Bacillus subtilis [17]
- Plasmodium falciparum [17]
- Sus scrofa [17]
- Escherichia phage ms2 [16]
- Escherichia coli [16]
- Phomopsis amygdali [15]
- Simian-human immunodeficiency virus [14]
- Salmonella enterica [13]
- Hepatitis b virus [12]
- Bacillus phage spp1 [12]
- Avian infectious bursal disease virus [12]
- Griffithsia pacifica [12]
- Streptococcus pneumoniae [11]
- Streptomyces venezuelae [11]
- Geobacillus stearothermophilus [10]
- Danio rerio [10]
- Simian virus 40 [9]
- Murine leukemia virus [9]
- Methanocaldococcus jannaschii [9]
- Thermoplasma acidophilum [9]
- Torpedo marmorata [9]
- Influenza d virus [8]
- Human immunodeficiency virus [8]
- Arabidopsis thaliana [8]
- Xenopus laevis [8]
- Salmonella phage p22 [7]
- Enterobacteria phage m13 [7]
- Escherichia phage ms2 [7]
- Staphylococcus aureus [7]
- Mycobacterium tuberculosis [7]
- Mycolicibacterium smegmatis [7]
- Photorhabdus luminescens [7]
- Schizosaccharomyces pombe [7]
- Neurospora crassa [7]
- Streptomyces coelicolor [6]
- Enterobacteria phage t4 [6]
- Bacillus phage phi29 [6]
- Campylobacter jejuni [6]
- Porcine epidemic diarrhea virus [6]
- Pseudomonas aeruginosa [6]
- Chlamydomonas reinhardtii [6]
- Spinacia oleracea [6]
- Manduca sexta [6]
- Bovine papillomavirus [5]
- Enterovirus c [5]
- Brome mosaic virus [5]
- Acidianus tengchongensis [5]
- Alkalihalobacillus halodurans [5]
- Vibrio cholerae [5]
- Chikungunya virus [5]
- Vibrio cholerae [5]
- Adeno-associated dependoparvovirus b [5]
- Camelus dromedarius [5]
- Pseudomonas virus prd1 [4]
- Pseudoalteromonas phage pm2 [4]
- Tobacco mosaic virus [4]
- Barley stripe mosaic virus [4]
- Helicobacter pylori [4]
- Thermus thermophilus [4]
- Lactococcus phage tp901-1 [4]
- Caenorhabditis elegans [4]
- Komagataella phaffii [4]
- Desulfovibrio vulgaris [4]
- Sus scrofa [4]
- Rosellinia necatrix quadrivirus 1 [3]
- Human herpesvirus 1 [3]
- Escherichia phage mu [3]
- Pseudomonas phage phi6 [3]
- Dengue virus [3]
- Enterovirus c [3]
- Red clover necrotic mosaic virus [3]
- Rosellinia necatrix megabirnavirus 1 [3]
- Lactococcus lactis [3]
- Methanothermobacter marburgensis [3]
- Mycoplasma genitalium [3]
- Mycoplasma pneumoniae [3]
- Escherichia coli [3]
- Pyrococcus furiosus [3]
- Saccharolobus solfataricus [3]
- Kelp fly virus [3]
- Escherichia phage k1e [3]
- Haliotis diversicolor [3]
- Enterovirus a [3]
- Grammostola rosea [3]
- Dictyostelium discoideum [3]
EM Method
- Single-particle [1763]
- Helical reconstruction [94]
- Subtomogram averaging [90]
- Tomography [83]
- Electron Crystallography [17]
Resolution
- < 2Å [6]
- ≥ 2Å and < 3Å [45]
- ≥ 3Å and < 4Å [190]
- ≥ 4Å and < 5Å [142]
- ≥ 5Å and < 6Å [58]
- ≥ 6Å and < 8Å [201]
- ≥ 8Å and < 12Å [301]
- ≥ 12Å and < 16Å [213]
- ≥ 16Å and < 20Å [240]
- ≥ 20Å and < 30Å [437]
- ≥ 30Å [178]
Model molecular weight
- 0-50 kDa [14]
- 50-100 kDa [16]
- 100-250 kDa [67]
- 250-500 kDa [68]
- 500-1000 kDa [102]
- 1-2 MDa [63]
- 2-5 MDa [57]
- 5-10 MDa [19]
- > 10 MDa [11]
Release Date
- 2022 [114]
- 2021 [147]
- 2020 [113]
- 2019 [85]
- 2018 [47]
- 2017 [74]
- 2016 [206]
- 2015 [251]
- 2014 [187]
- 2013 [194]
- 2012 [130]
- 2011 [104]
- 2010 [87]
- 2009 [75]
- 2008 [29]
- 2007 [66]
- 2006 [75]
- 2005 [28]
- 2004 [17]
- 2003 [18]
Author by name
- Chiu W [97]
- Walker JE [79]
- Montgomery MG [77]
- Spikes TE [69]
- Saibil HR [63]
- Carragher B [59]
- Potter CS [59]
- Ward AB [58]
- Ren G [54]
- Zhang X [52]
- Orlova EV [51]
- Nogales E [44]
- Ludtke SJ [42]
- Mielke T [42]
- Wang HW [40]
- Zhang J [38]
- Clare DK [37]
- Beckmann R [36]
- Liu Y [36]
- Cheng Y [35]
- Zhang K [35]
- Lei J [33]
- Wilson IA [33]
- Yu Y [33]
- De Val N [33]
- Berninghausen O [32]
- Schmid MF [32]
- Chen Y [31]
- Grigorieff N [31]
- Krauss RM [31]
- Lei D [31]
- Scheres SHW [31]
- Liu J [30]
- Shi Y [30]
- Frank J [29]
- Gilbert RJC [29]
- Krauss R [29]
- Kuang Y [29]
- Kuang YL [29]
- Jakana J [28]
- Zhang L [28]
- Zhang Y [28]
- Gao N [27]
- Llorca O [27]
- Li X [26]
- Wendler P [26]
- Cramer P [25]
- Campbell MG [24]
- Heddle JG [24]
- Lander GC [24]
- Marletta MA [24]
- Scheres SH [24]
- Underbakke ES [24]
- Bai XC [23]
- Biela AP [23]
- Wang Y [23]
- Wang Z [23]
- Rossmann MG [22]
- Wang L [22]
- Xu Y [22]
- Bhushan S [21]
- Guo Q [21]
- Liu X [21]
- Murakami K [21]
- Schulten K [21]
- Skiniotis G [21]
- Wang J [21]
- Zhang Z [21]
- Armache JP [20]
- Liu JJ [20]
- Niu CY [20]
- Plitzko JM [20]
- Stark H [20]
- Stuart DI [20]
- Barford D [19]
- Penczek PA [19]
- Rubinstein JL [19]
- Stagg SM [19]
- Sui SF [19]
- Wilson DN [19]
- Zhao J [19]
- Agard DA [18]
- Baumeister W [18]
- Breese Z [18]
- Cambillau C [18]
- Carrascosa JL [18]
- Caston JR [18]
- Cheng A [18]
- Deng H [18]
- Frydman J [18]
- Gilbert RJ [18]
- Goto S [18]
- Himeno H [18]
- Houry WA [18]
- Kampjut D [18]
- Kravchuk V [18]
- Luque D [18]
- Muto A [18]
- Petrova O [18]
- Sazanov L [18]
Author by ORCID
- Walker JE [79]
- Montgomery MG [77]
- Chiu W [77]
- Spikes TE [69]
- Orlova EV [51]
- Ren G [40]
- Ludtke SJ [39]
- Schmid MF [32]
- Cheng Y [29]
- Clare DK [28]
- Llorca O [26]
- Gao N [25]
- Scheres SH [24]
- Carragher B [24]
- Campbell MG [24]
- Underbakke ES [24]
- Lander GC [24]
- Bai XC [23]
- Grigorieff N [22]
- Skiniotis G [21]
- Armache JP [20]
- Murakami K [20]
- Bhushan S [20]
- Sui SF [19]
- Barford D [19]
- Stagg SM [19]
- Stuart DI [19]
- Deng H [18]
- Kravchuk V [18]
- Sazanov L [18]
- Plitzko JM [18]
- Zhang J [18]
- Wendler P [18]
- Frydman J [18]
- Caston JR [18]
- Liu J [17]
- Van Eeuwen T [17]
- Wilson DN [17]
- Grob P [16]
- Walz T [16]
- Akhouri RR [15]
- Julien JP [15]
- Li N [15]
- Christianson DW [15]
- Skoglund U [15]
- Ramakrishnan V [15]
- Furusho H [15]
- Topf M [15]
- Rubinstein JL [15]
- Fronzes R [15]
- Tegunov D [14]
- Jarrold MF [14]
- Robinson CV [14]
- Raunser S [14]
- Scheres SHW [14]
- Liu Y [14]
- Rivera-calzada A [14]
- Lee JH [13]
- Faylo JL [13]
- Zhang X [13]
- Loerke J [13]
- Quispe J [13]
- Freemont PS [13]
- Carroni M [13]
- Yang J [13]
- Moeller A [13]
- Subramaniam S [13]
- Reguera D [12]
- Chapman MS [12]
- Hoenger A [12]
- Gilbert RJ [12]
- Stahlberg H [12]
- Zhang J [12]
- Schoehn G [12]
- Ma J [12]
- Malet H [12]
- Rice WJ [12]
- Bamford DH [12]
- Leschziner AE [12]
- Shi Y [12]
- Barnes CO [12]
- Mata CP [12]
- Scheerer P [11]
- Behrmann E [11]
- Ward AB [11]
- Valpuesta JM [11]
- Mao Y [11]
- Zlotnick A [11]
- Peng R [11]
- Burger J [11]
- Plaschka C [11]
- Taylor DW [11]
- Schultz P [11]
- Zhang K [11]
- Martin A [11]
- Hakansson K [11]
- Chipman PR [11]
- Villa E [11]
- Hansen DA [11]
- Cramer P [10]
Journal
- PNAS [286]
- NATURE [220]
- STRUCTURE [139]
- NAT COMMUN [106]
- J MOL BIOL [101]
- SCIENCE [100]
- NAT STRUCT MOL BIOL [99]
- CELL [91]
- J BIOL CHEM [75]
- MOL CELL [74]
- J VIROL [73]
- ELIFE [70]
- EMBO J [57]
- TO BE PUBLISHED [49]
- PLOS PATHOG [39]
- NUCLEIC ACIDS RES [38]
- CELL REP [37]
- J STRUCT BIOL [27]
- SCI ADV [24]
- J CELL BIOL [21]
- BIOCHEMISTRY [17]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [17]
- NAT METHODS [17]
- COMMUN MATER [16]
- PLOS BIOL [16]
- FRONT MOL BIOSCI [15]
- PLOS ONE [14]
- BIORXIV [13]
- SCI REP [13]
- J LIPID RES [12]
- PROTEIN CELL [12]
- EMBO REP [11]
- OPEN BIOL [11]
- CELL RES [10]
- NAT MICROBIOL [10]
- BIOCHIM BIOPHYS ACTA [9]
- PHILOS TRANS R SOC LOND, B, BIOL SCI [8]
- FEBS LETT [7]
- GENES DEV [7]
- BIOCHEM J [6]
- DEV CELL [6]
- COMMUN BIOL [5]
- RNA [5]
- CELL CYCLE [4]
- J BACTERIOL [4]
- METHODS [4]
- NAT CELL BIOL [4]
- NAT NANOTECHNOL [4]
- PROTEIN SCI [4]
- SMALL [4]
- ACTA CRYSTALLOGR D STRUCT BIOL [3]
- CELL DISCOV [3]
- IMMUNITY [3]
- IUCRJ [3]
- NAT PLANTS [3]
- PHYS BIOL [3]
- ACS CHEM BIOL [2]
- ACTA NEUROPATHOL [2]
- ADV MATER WEINHEIM [2]
- ARCH BIOCHEM BIOPHYS [2]
- BIOPOLYMERS [2]
- CELL DEATH DIFFER. [2]
- J AM CHEM SOC [2]
- J CELL SCI [2]
- MOL MICROBIOL [2]
- NANO LETTERS [2]
- NAT CHEM BIOL [2]
- TRANSCRIPTION [2]
- ACS CENT SCI [1]
- AIDS RES HUM RETROVIRUSES [1]
- ANGEW CHEM INT ED ENGL [1]
- BIOPHYS J [1]
- BLOOD [1]
- CELL HOST MICROBE [1]
- CURR BIOL [1]
- FEBS J [1]
- FRONT CELL INFECT MICROBIOL [1]
- FRONT MICROBIOL [1]
- INT J BIOL MACROMOL [1]
- J BIOCHEM [1]
- J IMMUNOL [1]
- J VIS EXP [1]
- MICRO PUBL BIOL [1]
- MOL IMMUNOL [1]
- MOL PHARMACOL [1]
- MOL SYST BIOL [1]
- NAT CHEM [1]
- NAT IMMUNOL [1]
- NAT MED [1]
- NEURON [1]
- PHOTOCHEM PHOTOBIOL SCI [1]
- SCI TRANSL MED [1]
- VIROLOGY [1]
Software
- RELION [426]
- CHIMERA [226]
- SPIDER [221]
- CTFFIND [184]
- EMAN [141]
- CRYOSPARC [105]
- EMAN2 [67]
- IMAGIC [56]
- XMIPP [52]
- GCTF [50]
- FREALIGN [36]
- SITUS [34]
- IMAGIC, SPIDER [33]
- MDFF [26]
- EMAN2, SPARX [25]
- WARP [24]
- URO [23]
- CTFFIND3, RELION [22]
- IMOD [22]
- EMAN1 [18]
- SPARX [17]
- EMAN1, EMAN2 [16]
- COMET [15]
- UCSF CHIMERA [15]
- IPET, FETR, SPIDER, IMOD, EMAN, AND, EMAN2 [14]
- SPIDER, IMAGIC [14]
- IPET [12]
- O [12]
- SPIDER, RELION [12]
- TOMOCTF [12]
- CHIMERA, MDFF [11]
- CHIMERA, SITUS [11]
- SIGNATURE, CTFFIND3, SPIDER, SPARX [11]
- AUTO3DEM [10]
- IMAGIC-5, SPIDER [10]
- BSOFT [9]
- CISTEM [9]
- EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [9]
- IHRSR [9]
- IMAGIC-5 [9]
- PROTOMO [9]
- TOM, TOOLBOX, BSOFT, XMIPP [9]
- MOLREP, CHIMERA [8]
- MRC [8]
- MRC, IMAGIC, SPIDER [8]
- RELION, FREALIGN [8]
- SPIDER, IHRSR [8]
- CHIMERA, COOT [7]
- DIREX [7]
- EMAN, XMIPP [7]
- EMAN2, IMAGIC, RELION-1.3 [7]
- EMFIT [7]
- FLEX-EM [7]
- GAP [7]
- IMOD, EMAN2 [7]
- SPIDER, EMAN [7]
- SPIDER, TOM_TOOLBOX [7]
- CHIMERA, CNS [6]
- CHIMERA, FLEX-EM, NAMD2.6 [6]
- EMAN, SPARX [6]
- EMAN, SPIDER [6]
- EMAN1.8 [6]
- EMAN2, AND, SPARX [6]
- EMAN2, RELION [6]
- IMAGIC, FREALIGN [6]
- IMOD, PRIISM/IVE [6]
- PHOELIX [6]
- RELION, BOXER, EMAN2, CFTFIND, SPIDER [6]
- SPIDER, EMAN2, RELION [6]
- XMIPP, ML, TOMO [6]
- XMIPP, SPIDER [6]
- EMAN2 SPARX [5]
- EMAN2, RELION1.3 [5]
- IMAGIC, EMAN, FREALIGN, SPIDER, GAP [5]
- MPSA, EMAN, EMAN2 [5]
- SPIDER XMIPP [5]
- SPIDER, FREALIGN [5]
- SPIDER,XMIPP,IHRSR [5]
- SPRING [5]
- 2DX [4]
- CHIMERA, FLEX-EM [4]
- COOT [4]
- CTFFIND4 [4]
- CTFFIND4, RELION [4]
- EMAN, FREALIGN [4]
- EMAN, IMAGIC, SPIDER [4]
- EMAN2, SPIDER, XMIPP [4]
- EMBL, P3DR [4]
- IMAGIC, SPIDER, EMAN [4]
- IPET, AND, FETR [4]
- MANUAL [4]
- PHOELIX, SUPRIM [4]
- RELION1.4 [4]
- SPARX, EMAN2, FREALIGN [4]
- SPIDER AND GAP [4]
- SPIDER PACKAGE [4]
- SPIDER, EMAN, IHRSR, BSOFT [4]
- SPIDER, EMAN2 [4]
- SPIDER,EMAN1.9 [4]
- CHIMERA, ROSETTA [3]
Microscope
- FEI TITAN KRIOS [669]
- FEI TECNAI F20 [404]
- FEI POLARA 300 [157]
- FEI/PHILIPS CM200FEG [87]
- FEI TECNAI 12 [82]
- JEOL 2010F [66]
- FEI TECNAI 20 [62]
- FEI TECNAI SPIRIT [59]
- FEI TECNAI F30 [50]
- ZEISS LIBRA120PLUS [45]
- JEOL 3200FSC [41]
- FEI TALOS ARCTICA [28]
- JEOL 2200FS [27]
- FEI/PHILIPS CM300FEG/T [25]
- JEOL 2100F [22]
- JEOL 1230 [21]
- TFS GLACIOS [21]
- JEOL 4000EX [17]
- FEI/PHILIPS CM200FEG/ST [13]
- JEOL 1200EXII [13]
- JEOL 2100 [13]
- JEOL 3200FS [13]
- JEOL 3000SFF [10]
- OTHER [10]
- FEI/PHILIPS CM200T [9]
- JEOL 1200EX [9]
- FEI TECNAI ARCTICA [8]
- FEI TITAN [8]
- TFS KRIOS [8]
- FEI/PHILIPS CM120T [7]
- FEI TECNAI 10 [6]
- JEOL 1400 [6]
- JEOL 2000EX [6]
- JEOL KYOTO-3000SFF [5]
- TFS TALOS [5]
- JEOL 100CX [4]
- FEI/PHILIPS CM200FEG/UT [3]
- FEI/PHILIPS CM300FEG/ST [3]
- JEOL 2200FSC [3]
- FEI/PHILIPS CM10 [2]
- FEI/PHILIPS CM12 [2]
- HITACHI H-9500SD [2]
- JEOL 2010HT [2]
- JEOL 2010UHR [2]
- FEI TECNAI SPHERA [1]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- FEI/PHILIPS EM420 [1]
- JEOL 1200 [1]
- JEOL 2000EXII [1]
- JEOL 2010 [1]
- JEOL CRYO ARM 300 [1]
- ZEISS LEO912 [1]
Electron Source
- FIELD EMISSION GUN [1705]
- LAB6 [258]
- TUNGSTEN HAIRPIN [77]
- OTHER [8]
Film or detector model
- KODAK SO-163 FILM [417]
- GATAN ULTRASCAN 4000 4K X 4K [301]
- GATAN K2 SUMMIT 4K X 4K [199]
- FEI FALCON II 4K X 4K [158]
- GATAN K2 QUANTUM 4K X 4K [121]
- TVIPS TEMCAM-F416 4K X 4K [110]
- GENERIC GATAN 4K X 4K [80]
- GATAN K2 4K X 4K [78]
- GATAN K3 6K X 4K [68]
- FEI EAGLE 4K X 4K [67]
- FEI FALCON III 4K X 4K [54]
- GATAN K3 BIOQUANTUM 6K X 4K [44]
- TVIPS TEMCAM-F415 4K X 4K [40]
- GENERIC CCD [31]
- TVIPS TEMCAM-F816 8K X 8K [26]
- FEI FALCON I 4K X 4K [22]
- OTHER [20]
- GENERIC TVIPS 4K X 4K [19]
- GENERIC GATAN [18]
- GATAN MULTISCAN [17]
- GATAN ULTRASCAN 1000 2K X 2K [16]
- FEI EAGLE 2K X 2K [13]
- DIRECT ELECTRON DE-20 5K X 3K [12]
- KODAK 4489 FILM [12]
- FEI CETA 4K X 4K [11]
- DIRECT ELECTRON DE-12 4K X 3K [10]
- GENERIC CCD 2K X 2K [7]
- GATAN ORIUS SC200 2K X 2K [6]
- GENERIC FILM [6]
- TVIPS TEMCAM-F224 2K X 2K [6]
- FEI FALCON IV 4K X 4K [5]
- GATAN ULTRASCAN 10000 10K X 10K [3]
- GENERIC TVIPS [3]
- DIRECT ELECTRON DE-16 4K X 4K [2]
- SIA 15C 3K X 3K [2]
- AGFA SCIENTA FILM [1]
- DIRECT ELECTRON DE-10 5K X 4K [1]
- GATAN K2 BASE 4K X 4K [1]
- GATAN ORIUS SC1000 4K X 2.7K [1]
- GENERIC GATAN 2K X 2K [1]
- GENERIC IMAGE PLATES [1]
- PROSCAN TEM-PIV 2K X 2K [1]
External links
- UniProt [520]
- PDBe-Kb [496]
- AlphaFold DB [463]
- PDB [429]
- InterPro [155]
- Gene Ontology [125]
- EMPIAR [80]
- Pfam [38]
- ChEBI [30]
- DrugBank [29]
- ChEMBL [27]
- Complex Portal [19]
- SCOP2 [1]
