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molecular_replacement_software:PHASER

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Current Database

  • EMDB [13]

Current status

  • REL [13]

Sample type

  • Protein [13]
  • Complex [12]
  • Ligand [10]
  • Cellular component [1]

Organism

  • Homo sapiens [7]
  • Parengyodontium album [6]

EM Method

  • Electron Crystallography [13]

Resolution

  • < 2Å [8]
  • ≥ 2Å and < 3Å [2]

Model molecular weight

  • 0-50 kDa [12]
  • 50-100 kDa [1]

Release Date

  • 2026 [3]
  • 2025 [3]
  • 2021 [1]
  • 2018 [3]
  • 2016 [3]

Author by name

  • Gonen T [13]
  • Hattne J [8]
  • Cascio D [6]
  • Clabbers MTB [6]
  • Sawaya MR [6]
  • Eisenberg DS [5]
  • Martynowycz MW [5]
  • Rodriguez JA [4]
  • Shi D [4]
  • Glabe CG [3]
  • Jiang L [3]
  • Krotee P [3]
  • Martynoqycz MW [3]
  • Nannenga BL [3]
  • Philipp S [3]
  • Reyes FE [3]
  • Boyer DR [2]
  • Griner S [2]
  • Krotee PAL [2]
  • Murray K [2]
  • Oskarsson ME [2]
  • Seidler P [2]
  • Westermark GT [2]
  • Calero G [1]
  • Cherezov V [1]
  • Eisenberg D [1]
  • Ge P [1]
  • Ge X [1]
  • Griner SL [1]
  • Guenther EL [1]
  • Hinck AP [1]
  • Hinck CS [1]
  • Kim SK [1]
  • Lee J [1]
  • Rodriguez J [1]
  • Saelices L [1]
  • Seidler PM [1]
  • Shiriaeva A [1]
  • Trinh H [1]
  • Weiss SC [1]
  • Zhou ZH [1]
  • De La Cruz Mj [1]

Author by ORCID

  • Hattne J [8]
  • Gonen T [7]
  • Clabbers MTB [6]
  • Sawaya MR [6]
  • Martynowycz MW [4]
  • Nannenga BL [3]
  • Cascio D [2]
  • Griner S [2]
  • Krotee P [2]
  • Eisenberg DS [2]
  • Seidler PM [1]
  • Saelices L [1]
  • Ge P [1]
  • Shiriaeva A [1]
  • Griner SL [1]
  • Cherezov V [1]
  • De La Cruz Mj [1]
  • Trinh H [1]

Journal

  • BIORXIV [4]
  • ELIFE [2]
  • STRUCT DYN. [2]
  • J BIOL CHEM [1]
  • NAT CHEM [1]
  • NAT COMMUN [1]
  • NAT METHODS [1]
  • NAT STRUCT MOL BIOL [1]
  • PNAS [1]

Software

  • PHASER [13]
  • XSCALE [9]
  • XDS [7]
  • PHENIX [6]
  • AIMLESS [1]
  • DIALS [1]
  • PHENIX.REFINE [1]
  • POINTLESS [1]

Microscope

  • TFS KRIOS [6]
  • FEI TECNAI 20 [4]
  • FEI TECNAI F20 [2]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [13]

Film or detector model

  • FEI FALCON IV 4K X 4K [6]
  • TVIPS TEMCAM-F416 4K X 4K [6]
  • FEI CETA 4K X 4K [1]

External links

  • AlphaFold DB [13]
  • PDB [13]
  • UniProt [13]
  • PDBe-Kb [12]
  • ChEBI [10]
  • ChEMBL [10]
  • DrugBank [10]
  • Gene Ontology [5]
  • InterPro [5]
  • Complex Portal [2]
  • Pfam [2]
  • CATH [1]
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Showing 1 - 10 of 13. Page 1 of 2
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EMD-48783
Download Map
3D View
Structure of proteinase K from energy-filtered MicroED data using a 5 eV slit width
CryoEM
Release date: July 29, 2026
Resolution: 1.2 Å
EM Method: Electron Crystallography
Fitted PDBs: 9n0f

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

bioRxiv (2025) [ Pubmed: 40060527 DOI: doi:10.1101/2025.02.24.639939 ]

EMD-48784
Download Map
3D View
Structure of proteinase K from energy-filtered MicroED data using a 10 eV slit width
CryoEM
Release date: July 29, 2026
Resolution: 1.2 Å
EM Method: Electron Crystallography
Fitted PDBs: 9n0g

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

bioRxiv (2025) [ Pubmed: 40060527 DOI: doi:10.1101/2025.02.24.639939 ]

EMD-48785
Download Map
3D View
Structure of proteinase K from energy-filtered MicroED data using a 20 eV slit width
CryoEM
Release date: July 29, 2026
Resolution: 1.2 Å
EM Method: Electron Crystallography
Fitted PDBs: 9n0h

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

bioRxiv (2025) [ Pubmed: 40060527 DOI: doi:10.1101/2025.02.24.639939 ]

EMD-70378
Download Map
3D View
MicroED structure of proteinase K without energy filtering
CryoEM
Release date: May 28, 2025
Resolution: 1.3 Å
EM Method: Electron Crystallography
Fitted PDBs: 9odv
Q-score: 0.763
Similar entry percentile: 20%

Clabbers MTB, Gonen T

Struct Dyn. (2025) 12 pp. 034702-034702 [ DOI: doi:10.1063/4.0000755 Pubmed: 40370641 ]

EMD-70379
Download Map
3D View
MicroED structure of proteinase K with energy filtering
CryoEM
Release date: May 28, 2025
Resolution: 1.3 Å
EM Method: Electron Crystallography
Fitted PDBs: 9odw
Q-score: 0.767
Similar entry percentile: 22%

Clabbers MTB, Gonen T

Struct Dyn. (2025) 12 pp. 034702-034702 [ DOI: doi:10.1063/4.0000755 Pubmed: 40370641 ]

EMD-46871
Download Map
3D View
Structure of proteinase K from energy-filtered MicroED data
CryoEM
Release date: March 19, 2025
Resolution: 1.09 Å
EM Method: Electron Crystallography
Fitted PDBs: 9dho

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

Nat Commun (2025) 16 pp. 2247-2247 [ Pubmed: 40050283 DOI: doi:10.1038/s41467-025-57425-1 ]

EMD-24551
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3D View
MicroED structure of the human adenosine receptor at 2.8A
CryoEM
Release date: Sept. 8, 2021
Resolution: 2.79 Å
EM Method: Electron Crystallography
Fitted PDBs: 7rm5
Q-score: 0.582
Similar entry percentile: 83%

Martynowycz MW, Shiriaeva A, Ge X, Hattne J, Nannenga BL, Cherezov V, Gonen T

PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2106041118 Pubmed: 34462357 ]

EMD-8765
Download Map
3D View
MicroED structure of the segment, DLIIKGISVHI, from the RRM2 of TDP-43, residues 247-257
CryoEM
Release date: Feb. 21, 2018
EM Method: Electron Crystallography
Fitted PDBs: 5w52

Guenther EL, Ge P, Trinh H, Sawaya MR, Cascio D, Boyer DR, Gonen T, Zhou ZH, Eisenberg DS

Nat Struct Mol Biol (2018) 25 pp. 311-319 [ DOI: doi:10.1038/s41594-018-0045-5 Pubmed: 29531287 ]

EMD-8635
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3D View
VQIINK, Structure of the amyloid-spine from microtubule associated protein tau Repeat 2
CryoEM
Release date: Feb. 7, 2018
EM Method: Electron Crystallography
Fitted PDBs: 5v5c

Seidler PM, Boyer DR, Rodriguez JA, Sawaya MR, Cascio D, Murray K, Gonen T, Eisenberg DS

Nat Chem (2018) 10 pp. 170-176 [ Pubmed: 29359764 DOI: doi:10.1038/nchem.2889 ]

EMD-8720
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3D View
VGSNKGAIIGL from Amyloid Beta determined by MicroED
CryoEM
Release date: Jan. 3, 2018
EM Method: Electron Crystallography
Fitted PDBs: 5vos

Krotee P, Griner SL, Sawaya MR, Cascio D, Rodriguez JA, Shi D, Philipp S, Murray K, Saelices L, Lee J, Seidler P, Glabe CG, Jiang L, Gonen T, Eisenberg DS

J Biol Chem (2018) 293 pp. 2888-2902 [ Pubmed: 29282295 DOI: doi:10.1074/jbc.M117.806109 ]

Sort by: Download
Showing 1 - 10 of 13. Page 1 of 2
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [13]

Current status

  • REL [13]

Sample type

  • Protein [13]
  • Complex [12]
  • Ligand [10]
  • Cellular component [1]

Organism

  • Homo sapiens [7]
  • Parengyodontium album [6]

EM Method

  • Electron Crystallography [13]

Resolution

  • < 2Å [8]
  • ≥ 2Å and < 3Å [2]

Model molecular weight

  • 0-50 kDa [12]
  • 50-100 kDa [1]

Release Date

  • 2026 [3]
  • 2025 [3]
  • 2021 [1]
  • 2018 [3]
  • 2016 [3]

Author by name

  • Gonen T [13]
  • Hattne J [8]
  • Cascio D [6]
  • Clabbers MTB [6]
  • Sawaya MR [6]
  • Eisenberg DS [5]
  • Martynowycz MW [5]
  • Rodriguez JA [4]
  • Shi D [4]
  • Glabe CG [3]
  • Jiang L [3]
  • Krotee P [3]
  • Martynoqycz MW [3]
  • Nannenga BL [3]
  • Philipp S [3]
  • Reyes FE [3]
  • Boyer DR [2]
  • Griner S [2]
  • Krotee PAL [2]
  • Murray K [2]
  • Oskarsson ME [2]
  • Seidler P [2]
  • Westermark GT [2]
  • Calero G [1]
  • Cherezov V [1]
  • Eisenberg D [1]
  • Ge P [1]
  • Ge X [1]
  • Griner SL [1]
  • Guenther EL [1]
  • Hinck AP [1]
  • Hinck CS [1]
  • Kim SK [1]
  • Lee J [1]
  • Rodriguez J [1]
  • Saelices L [1]
  • Seidler PM [1]
  • Shiriaeva A [1]
  • Trinh H [1]
  • Weiss SC [1]
  • Zhou ZH [1]
  • De La Cruz Mj [1]

Author by ORCID

  • Hattne J [8]
  • Gonen T [7]
  • Clabbers MTB [6]
  • Sawaya MR [6]
  • Martynowycz MW [4]
  • Nannenga BL [3]
  • Cascio D [2]
  • Griner S [2]
  • Krotee P [2]
  • Eisenberg DS [2]
  • Seidler PM [1]
  • Saelices L [1]
  • Ge P [1]
  • Shiriaeva A [1]
  • Griner SL [1]
  • Cherezov V [1]
  • De La Cruz Mj [1]
  • Trinh H [1]

Journal

  • BIORXIV [4]
  • ELIFE [2]
  • STRUCT DYN. [2]
  • J BIOL CHEM [1]
  • NAT CHEM [1]
  • NAT COMMUN [1]
  • NAT METHODS [1]
  • NAT STRUCT MOL BIOL [1]
  • PNAS [1]

Software

  • PHASER [13]
  • XSCALE [9]
  • XDS [7]
  • PHENIX [6]
  • AIMLESS [1]
  • DIALS [1]
  • PHENIX.REFINE [1]
  • POINTLESS [1]

Microscope

  • TFS KRIOS [6]
  • FEI TECNAI 20 [4]
  • FEI TECNAI F20 [2]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [13]

Film or detector model

  • FEI FALCON IV 4K X 4K [6]
  • TVIPS TEMCAM-F416 4K X 4K [6]
  • FEI CETA 4K X 4K [1]

External links

  • AlphaFold DB [13]
  • PDB [13]
  • UniProt [13]
  • PDBe-Kb [12]
  • ChEBI [10]
  • ChEMBL [10]
  • DrugBank [10]
  • Gene Ontology [5]
  • InterPro [5]
  • Complex Portal [2]
  • Pfam [2]
  • CATH [1]