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modelling_software_sgt:PHENIX

Filter By

Current Database

  • EMDB [31]

Current status

  • REL [31]

Sample type

  • Complex [31]
  • Protein [24]
  • Ligand [16]

Organism

  • Homo sapiens [10]
  • Paracoccus sp. dmf [3]
  • Synechococcus elongatus [2]
  • Sarbecovirus sp. rhgb07 [2]
  • Oryza sativa [2]
  • Saccharomyces cerevisiae [2]
  • Mus musculus [1]
  • Human cytomegalovirus [1]
  • Mycobacterium tuberculosis [1]
  • Escherichia phage lambda [1]
  • Geobacter metallireducens [1]
  • Oryza sativa [1]
  • Methylosinus sporium [1]
  • (no species) [1]
  • Saccharomyces cerevisiae [1]
  • Escherichia coli [1]
  • Synechococcus virus scbp4 [1]
  • Escherichia coli [1]
  • Salmonella enterica [1]
  • Canis lupus [1]

EM Method

  • Single-particle [30]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [23]
  • ≥ 3Å and < 4Å [6]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [7]
  • 250-500 kDa [8]
  • 500-1000 kDa [3]
  • 2-5 MDa [2]

Release Date

  • 2026 [16]
  • 2025 [5]
  • 2024 [2]
  • 2023 [3]
  • 2022 [3]
  • 2020 [2]

Author by name

  • Cheung J [8]
  • Karasawa A [8]
  • Dhanabalan K [4]
  • Subramanian R [4]
  • Thach T [4]
  • Allison J [3]
  • Brignole EJ [3]
  • Drennan CL [3]
  • Han-hallet Y [3]
  • Kong S [3]
  • Marquez MD [3]
  • Maurya S [3]
  • Park C [3]
  • Perlstein DL [3]
  • Quan S [3]
  • Ramanathan G [3]
  • Vasquez S [3]
  • Vo A [3]
  • Ai X [2]
  • Bischoff AJ [2]
  • Chen WF [2]
  • Dong CN [2]
  • Ekundayo B [2]
  • Fosse P [2]
  • Hou XM [2]
  • Huang LY [2]
  • Lafrance B [2]
  • Lafrance BJ [2]
  • Lau K [2]
  • Lei DS [2]
  • Li HH [2]
  • Liu NN [2]
  • Mauffret O [2]
  • Newman J [2]
  • Nichols RJ [2]
  • Nogales E [2]
  • Oltrogge LM [2]
  • Phillips NR [2]
  • Radford DR [2]
  • Rety S [2]
  • Savage DF [2]
  • Valentin-alvarado LE [2]
  • Xi XG [2]
  • Zhang ZL [2]
  • Alvarado S [1]
  • Amara P [1]
  • Ando N [1]
  • Arango N [1]
  • Aversa R [1]
  • Aversa RJ [1]
  • Bailey D [1]
  • Baimukhametov TN [1]
  • Basbous H [1]
  • Baymukhametov TN [1]
  • Boyko KM [1]
  • Breitkopf SB [1]
  • Brown D [1]
  • Bryk R [1]
  • Burnim AA [1]
  • Burtseva AD [1]
  • Caserta G [1]
  • Chait BT [1]
  • Chase J [1]
  • Chen D [1]
  • Cherrier MV [1]
  • Chesnokov YM [1]
  • Chevance FFV [1]
  • Collier P [1]
  • Collier PN [1]
  • Dergalev AA [1]
  • Dobrzynska K [1]
  • Doores KJ [1]
  • Echavarri-erasun C [1]
  • Ekundayo BE [1]
  • Enerson B [1]
  • Fitzpatrick JAJ [1]
  • Ford M [1]
  • Fyfe C [1]
  • Garcia KC [1]
  • Ginn J [1]
  • Growney JD [1]
  • Hay AL [1]
  • Heisler I [1]
  • Hong HJ [1]
  • Howarth C [1]
  • Howarth L [1]
  • Hughes KT [1]
  • Hwang Y [1]
  • Isiorho E [1]
  • Jackson CJ [1]
  • Jeruzalmi D [1]
  • Jude KM [1]
  • Kang HG [1]
  • Kato T [1]
  • Kochanczyk T [1]
  • Kushnirov VV [1]
  • Kwiatkowski NP [1]
  • Lee DH [1]
  • Lee SJ [1]
  • Legrand P [1]

Author by ORCID

  • Oltrogge LM [2]
  • Nogales E [2]
  • Savage DF [2]
  • Hughes KT [1]
  • Mount J [1]
  • Drennan CL [1]
  • Jeruzalmi D [1]
  • Maksaev G [1]
  • Pozharski E [1]
  • Garcia KC [1]
  • Lee SJ [1]
  • Yamaguchi T [1]
  • Tsutsumi N [1]
  • Jude KM [1]
  • Kochanczyk T [1]
  • Yuan P [1]
  • Hwang Y [1]
  • Perlstein DL [1]
  • Fitzpatrick JAJ [1]
  • Collier PN [1]
  • Zheng X [1]
  • Kato T [1]
  • Lima CD [1]
  • Marquez MD [1]
  • Aversa RJ [1]
  • Paul A [1]
  • Ryu B [1]
  • Su L [1]
  • Namba K [1]
  • Chevance FFV [1]
  • Growney JD [1]

Journal

  • STRUCTURE [8]
  • ELIFE [6]
  • BIORXIV [5]
  • COMMUN BIOL [4]
  • NAT COMMUN [2]
  • NAT PLANTS [2]
  • TO BE PUBLISHED [2]
  • J BIOL CHEM [1]
  • J MED CHEM [1]
  • NAT CHEM BIOL [1]
  • NOT PUBLISHED [1]
  • NUCLEIC ACIDS RES [1]

Software

  • PHENIX [31]
  • CRYOSPARC [25]
  • RELION [6]
  • CRYOLO [1]
  • CTFFIND [1]
  • WARP [1]

Microscope

  • TFS KRIOS [17]
  • FEI TITAN KRIOS [6]
  • FEI TECNAI ARCTICA [3]
  • TFS GLACIOS [3]
  • JEOL CRYO ARM 300 [1]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [31]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [12]
  • GATAN K2 SUMMIT 4K X 4K [5]
  • FEI FALCON IV 4K X 4K [4]
  • GATAN K3 6K X 4K [4]
  • GATAN K3 BIOCONTINUUM 6K X 4K [4]
  • FEI FALCON III 4K X 4K [2]

External links

  • PDB [21]
  • Pfam [16]
  • UniProt [16]
  • AlphaFold DB [15]
  • InterPro [15]
  • ChEBI [14]
  • ChEMBL [13]
  • Gene Ontology [13]
  • PDBe-Kb [13]
  • DrugBank [11]
  • EMPIAR [4]
  • Complex Portal [2]
Sort by: Download
Showing 1 - 10 of 31. Page 1 of 4
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EMD-76967
Download Map
3D View
Focus map for tetramerization domain of cryo-EM structure of an intact human acetylcholinesterase T-form tetramer in complex with ColQ
CryoEM
Focused map
Release date: Oct. 7, 2026
Resolution: 2.91 Å
EM Method: Single-particle

Cheung J, Karasawa A

Structure (2026) [ Pubmed: 42772275 DOI: doi:10.1016/j.str.2026.08.016 ]

EMD-76969
Download Map
3D View
Focus map for catalytic domains A and B for cryo-EM structure of an intact human acetylcholinesterase T-form tetramer in complex with ColQ
CryoEM
Focused map
Release date: Oct. 7, 2026
Resolution: 2.7 Å
EM Method: Single-particle

Cheung J, Karasawa A

Structure (2026) [ Pubmed: 42772275 DOI: doi:10.1016/j.str.2026.08.016 ]

EMD-76970
Download Map
3D View
Consensus map for cryo-EM structure of an intact human acetylcholinesterase T-form tetramer in complex with ColQ
CryoEM
Consensus map
Release date: Oct. 7, 2026
Resolution: 2.81 Å
EM Method: Single-particle

Cheung J, Karasawa A

Structure (2026) [ Pubmed: 42772275 DOI: doi:10.1016/j.str.2026.08.016 ]

EMD-76972
Download Map
3D View
Focus map C and D chains for cryo-EM structure of an intact human acetylcholinesterase T-form tetramer in complex with PRiMA
CryoEM
Focused map
Release date: Oct. 7, 2026
Resolution: 2.82 Å
EM Method: Single-particle

Cheung J, Karasawa A

Structure (2026) [ Pubmed: 42772275 DOI: doi:10.1016/j.str.2026.08.016 ]

EMD-76973
Download Map
3D View
Focus map A and B chains for cryo-EM structure of an intact human acetylcholinesterase T-form tetramer in complex with PRiMA
CryoEM
Focused map
Release date: Oct. 7, 2026
Resolution: 2.95 Å
EM Method: Single-particle

Cheung J, Karasawa A

Structure (2026) [ Pubmed: 42772275 DOI: doi:10.1016/j.str.2026.08.016 ]

EMD-76974
Download Map
3D View
Consensus map for cryo-EM structure of an intact human acetylcholinesterase T-form tetramer in complex with PRiMA
CryoEM
Consensus map
Release date: Oct. 7, 2026
Resolution: 2.94 Å
EM Method: Single-particle

Cheung J, Karasawa A

Structure (2026) [ Pubmed: 42772275 DOI: doi:10.1016/j.str.2026.08.016 ]

EMD-66942
Download Map
3D View
Raw data
EMPIAR-13238
Structure of the CX3CL1.44-US28-GqiN18-scFv16 in the E-state, chemokine domain fully modeled
CryoEM
Release date: Sept. 23, 2026
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 9xjp
Q-score: 0.581
Similar entry percentile: 82%

Jude KM, Garcia KC, Tsutsumi N

To Be Published

EMD-76971
Download Map
3D View
Cryo-EM structure of an intact human acetylcholinesterase T-form tetramer in complex with ColQ
Composite map
CryoEM
Release date: Sept. 16, 2026
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 13co
Q-score: 0.586
Similar entry percentile: 86%

Cheung J, Karasawa A

Structure (2026) [ Pubmed: 42772275 DOI: doi:10.1016/j.str.2026.08.016 ]

EMD-76975
Download Map
3D View
Cryo-EM structure of an intact human acetylcholinesterase T-form tetramer in complex with PRiMA
Composite map
CryoEM
Release date: Sept. 16, 2026
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 13cp
Q-score: 0.593
Similar entry percentile: 92%

Cheung J, Karasawa A

Structure (2026) [ Pubmed: 42772275 DOI: doi:10.1016/j.str.2026.08.016 ]

EMD-72223
Download Map
3D View
Cryo-EM structure of Paracoccus Trimethylamine N-oxide Demethylase
CryoEM
Release date: Aug. 26, 2026
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 9q59
Q-score: 0.616
Similar entry percentile: 92%

Thach T, Dhanabalan K, Maurya S, Han-Hallet Y, Quan S, Allison J, Ramanathan G, Subramanian R

eLife (2026) [ DOI: doi:10.7554/elife.109964.2 ]

Sort by: Download
Showing 1 - 10 of 31. Page 1 of 4
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [31]

Current status

  • REL [31]

Sample type

  • Complex [31]
  • Protein [24]
  • Ligand [16]

Organism

  • Homo sapiens [10]
  • Paracoccus sp. dmf [3]
  • Synechococcus elongatus [2]
  • Sarbecovirus sp. rhgb07 [2]
  • Oryza sativa [2]
  • Saccharomyces cerevisiae [2]
  • Mus musculus [1]
  • Human cytomegalovirus [1]
  • Mycobacterium tuberculosis [1]
  • Escherichia phage lambda [1]
  • Geobacter metallireducens [1]
  • Oryza sativa [1]
  • Methylosinus sporium [1]
  • (no species) [1]
  • Saccharomyces cerevisiae [1]
  • Escherichia coli [1]
  • Synechococcus virus scbp4 [1]
  • Escherichia coli [1]
  • Salmonella enterica [1]
  • Canis lupus [1]

EM Method

  • Single-particle [30]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [23]
  • ≥ 3Å and < 4Å [6]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [7]
  • 250-500 kDa [8]
  • 500-1000 kDa [3]
  • 2-5 MDa [2]

Release Date

  • 2026 [16]
  • 2025 [5]
  • 2024 [2]
  • 2023 [3]
  • 2022 [3]
  • 2020 [2]

Author by name

  • Cheung J [8]
  • Karasawa A [8]
  • Dhanabalan K [4]
  • Subramanian R [4]
  • Thach T [4]
  • Allison J [3]
  • Brignole EJ [3]
  • Drennan CL [3]
  • Han-hallet Y [3]
  • Kong S [3]
  • Marquez MD [3]
  • Maurya S [3]
  • Park C [3]
  • Perlstein DL [3]
  • Quan S [3]
  • Ramanathan G [3]
  • Vasquez S [3]
  • Vo A [3]
  • Ai X [2]
  • Bischoff AJ [2]
  • Chen WF [2]
  • Dong CN [2]
  • Ekundayo B [2]
  • Fosse P [2]
  • Hou XM [2]
  • Huang LY [2]
  • Lafrance B [2]
  • Lafrance BJ [2]
  • Lau K [2]
  • Lei DS [2]
  • Li HH [2]
  • Liu NN [2]
  • Mauffret O [2]
  • Newman J [2]
  • Nichols RJ [2]
  • Nogales E [2]
  • Oltrogge LM [2]
  • Phillips NR [2]
  • Radford DR [2]
  • Rety S [2]
  • Savage DF [2]
  • Valentin-alvarado LE [2]
  • Xi XG [2]
  • Zhang ZL [2]
  • Alvarado S [1]
  • Amara P [1]
  • Ando N [1]
  • Arango N [1]
  • Aversa R [1]
  • Aversa RJ [1]
  • Bailey D [1]
  • Baimukhametov TN [1]
  • Basbous H [1]
  • Baymukhametov TN [1]
  • Boyko KM [1]
  • Breitkopf SB [1]
  • Brown D [1]
  • Bryk R [1]
  • Burnim AA [1]
  • Burtseva AD [1]
  • Caserta G [1]
  • Chait BT [1]
  • Chase J [1]
  • Chen D [1]
  • Cherrier MV [1]
  • Chesnokov YM [1]
  • Chevance FFV [1]
  • Collier P [1]
  • Collier PN [1]
  • Dergalev AA [1]
  • Dobrzynska K [1]
  • Doores KJ [1]
  • Echavarri-erasun C [1]
  • Ekundayo BE [1]
  • Enerson B [1]
  • Fitzpatrick JAJ [1]
  • Ford M [1]
  • Fyfe C [1]
  • Garcia KC [1]
  • Ginn J [1]
  • Growney JD [1]
  • Hay AL [1]
  • Heisler I [1]
  • Hong HJ [1]
  • Howarth C [1]
  • Howarth L [1]
  • Hughes KT [1]
  • Hwang Y [1]
  • Isiorho E [1]
  • Jackson CJ [1]
  • Jeruzalmi D [1]
  • Jude KM [1]
  • Kang HG [1]
  • Kato T [1]
  • Kochanczyk T [1]
  • Kushnirov VV [1]
  • Kwiatkowski NP [1]
  • Lee DH [1]
  • Lee SJ [1]
  • Legrand P [1]

Author by ORCID

  • Oltrogge LM [2]
  • Nogales E [2]
  • Savage DF [2]
  • Hughes KT [1]
  • Mount J [1]
  • Drennan CL [1]
  • Jeruzalmi D [1]
  • Maksaev G [1]
  • Pozharski E [1]
  • Garcia KC [1]
  • Lee SJ [1]
  • Yamaguchi T [1]
  • Tsutsumi N [1]
  • Jude KM [1]
  • Kochanczyk T [1]
  • Yuan P [1]
  • Hwang Y [1]
  • Perlstein DL [1]
  • Fitzpatrick JAJ [1]
  • Collier PN [1]
  • Zheng X [1]
  • Kato T [1]
  • Lima CD [1]
  • Marquez MD [1]
  • Aversa RJ [1]
  • Paul A [1]
  • Ryu B [1]
  • Su L [1]
  • Namba K [1]
  • Chevance FFV [1]
  • Growney JD [1]

Journal

  • STRUCTURE [8]
  • ELIFE [6]
  • BIORXIV [5]
  • COMMUN BIOL [4]
  • NAT COMMUN [2]
  • NAT PLANTS [2]
  • TO BE PUBLISHED [2]
  • J BIOL CHEM [1]
  • J MED CHEM [1]
  • NAT CHEM BIOL [1]
  • NOT PUBLISHED [1]
  • NUCLEIC ACIDS RES [1]

Software

  • PHENIX [31]
  • CRYOSPARC [25]
  • RELION [6]
  • CRYOLO [1]
  • CTFFIND [1]
  • WARP [1]

Microscope

  • TFS KRIOS [17]
  • FEI TITAN KRIOS [6]
  • FEI TECNAI ARCTICA [3]
  • TFS GLACIOS [3]
  • JEOL CRYO ARM 300 [1]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [31]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [12]
  • GATAN K2 SUMMIT 4K X 4K [5]
  • FEI FALCON IV 4K X 4K [4]
  • GATAN K3 6K X 4K [4]
  • GATAN K3 BIOCONTINUUM 6K X 4K [4]
  • FEI FALCON III 4K X 4K [2]

External links

  • PDB [21]
  • Pfam [16]
  • UniProt [16]
  • AlphaFold DB [15]
  • InterPro [15]
  • ChEBI [14]
  • ChEMBL [13]
  • Gene Ontology [13]
  • PDBe-Kb [13]
  • DrugBank [11]
  • EMPIAR [4]
  • Complex Portal [2]