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microscopy_software_sgt:SerialEM

Filter By

Current Database

  • EMDB [167]

Current status

  • REL [167]

Sample type

  • Complex [108]
  • Protein [100]
  • Ligand [55]
  • Cellular component [50]
  • Cell [8]
  • RNA [5]
  • DNA [4]
  • Virus [1]

Organism

  • Trypanosoma brucei [46]
  • Homo sapiens [37]
  • Methanosarcina acetivorans [10]
  • Mus musculus [8]
  • Cricetulus griseus [6]
  • Prevotella copri [6]
  • Synthetic construct [6]
  • Toxoplasma gondii [6]
  • Influenza a virus [5]
  • Bordetella bronchiseptica [5]
  • Severe acute respiratory syndrome coronavirus [5]
  • Sus scrofa [5]
  • Rattus norvegicus [4]
  • Arabidopsis thaliana [4]
  • Escherichia coli [4]
  • Oryctolagus cuniculus [4]
  • Pasteurella multocida [3]
  • Flock house virus [3]
  • Bos taurus [3]
  • Human herpesvirus 1 [2]
  • Synechococcus elongatus [2]
  • Oryza sativa [2]
  • Cryptosporidium parvum [2]
  • Saccharomyces cerevisiae [2]
  • Escherichia coli [2]
  • Aequorea victoria [2]
  • Caenorhabditis elegans [2]
  • Salmonella enterica [2]
  • Semliki forest virus [1]
  • Human immunodeficiency virus 1 [1]
  • Human immunodeficiency virus 1 [1]
  • Clostridium perfringens [1]
  • (no species) [1]
  • Thermus thermophilus [1]
  • Azotobacter vinelandii [1]
  • Oryza sativa [1]
  • Schizosaccharomyces pombe [1]
  • Saccharomyces cerevisiae [1]
  • Bat coronavirus hku5 [1]
  • Synechococcus virus scbp4 [1]
  • Mycobacterium tuberculosis [1]
  • Xenopus laevis [1]
  • Clavularia sp. [1]
  • Yersinia entomophaga [1]
  • Bdellovibrio bacteriovorus [1]

EM Method

  • Single-particle [139]
  • Tomography [11]
  • Subtomogram averaging [10]
  • Helical reconstruction [7]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [39]
  • ≥ 3Å and < 4Å [75]
  • ≥ 4Å and < 5Å [24]
  • ≥ 5Å and < 6Å [7]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [6]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 100-250 kDa [1]

Release Date

  • 2026 [24]
  • 2025 [92]
  • 2024 [28]
  • 2023 [19]
  • 2022 [2]
  • 2020 [2]

Author by name

  • Hill KL [46]
  • Kassem AM [46]
  • Langousis G [46]
  • Liu S [46]
  • Shimogawa MM [46]
  • Wang H [46]
  • Wijono A [46]
  • Wohlschlegel JA [46]
  • Xia X [46]
  • Zhou ZH [46]
  • Fukuda Y [11]
  • Inoue T [11]
  • Cate JHD [10]
  • Kivimae RW [10]
  • Nayak DD [10]
  • Nissley AJ [10]
  • Shulgina Y [10]
  • Williams MC [10]
  • Chang Y-W [8]
  • Chang YW [8]
  • Martinez M [8]
  • Soldati-favre D [8]
  • Balaji A [7]
  • Brunger AT [7]
  • Chen S [7]
  • Couoh-cardel S [7]
  • Diao J [7]
  • Esquivies L [7]
  • Guerin A [7]
  • Khan YA [7]
  • Pfuetzner RA [7]
  • Qiu K [7]
  • Striepen B [7]
  • White KI [7]
  • Basiashvili T [6]
  • Ehara H [6]
  • Gonen S [6]
  • Henmi M [6]
  • Hutchings J [6]
  • Ito T [6]
  • Kobayashi T [6]
  • Kujirai T [6]
  • Kurumizaka H [6]
  • Leschziner AE [6]
  • Neumann B [6]
  • Oya E [6]
  • Sekine SI [6]
  • Shobu K [6]
  • Villa E [6]
  • Abu-shmais A [5]
  • Alegrio Louro J [5]
  • Andrews S [5]
  • Bjorkman PJ [5]
  • Fan C [5]
  • Kanekiyo M [5]
  • Maco B [5]
  • Malla T [5]
  • Malla TN [5]
  • Sanz Murillo M [5]
  • Sassa M [5]
  • Tanino H [5]
  • Tsybovsky Y [5]
  • Villagran Suarez A [5]
  • Yamato H [5]
  • Zhou T [5]
  • Al-bassam J [4]
  • Alvarez J [4]
  • Ashaduzzaman M [4]
  • Baharani VA [4]
  • Bieniasz PD [4]
  • Cagatay T [4]
  • Chook YM [4]
  • Cohen AA [4]
  • Daelemans D [4]
  • Delgado-betancourt E [4]
  • Dos Santos Pacheco N [4]
  • Fried SD [4]
  • Fung HYJ [4]
  • Gao H [4]
  • Gharghabi M [4]
  • Gnanapragasam PNP [4]
  • Guo F [4]
  • Hatziioannou T [4]
  • Jacquemyn M [4]
  • Kashyap T [4]
  • Keeffe JR [4]
  • Kwanten B [4]
  • Landesman Y [4]
  • Lapalombella R [4]
  • Lee YJ [4]
  • Liu B [4]
  • Lunghi M [4]
  • Malecek KE [4]
  • Nandi R [4]
  • Niesman AB [4]
  • Permentier B [4]
  • Ready JM [4]
  • Rho S [4]
  • Rorick AV [4]
  • Segovia LN [4]

Author by ORCID

  • Lapalombella R [1]
  • Daelemans D [1]
  • Gharghabi M [1]
  • Fung HYJ [1]
  • Chook YM [1]
  • Wing CE [1]
  • Cagatay T [1]
  • Ready JM [1]
  • Jacquemyn M [1]
  • Kwanten B [1]
  • Permentier B [1]
  • Niesman AB [1]

Journal

  • SCIENCE [46]
  • BIORXIV [28]
  • NAT COMMUN [28]
  • TO BE PUBLISHED [12]
  • PNAS [10]
  • ELIFE [9]
  • SCI ADV [9]
  • J BIOL CHEM [5]
  • NAT STRUCT MOL BIOL [5]
  • CELL [4]
  • PLOS PATHOG [3]
  • BLOOD [2]
  • CELL RES [2]
  • NAT CHEM BIOL [2]
  • NAT PLANTS [2]
  • RNA [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • J MED CHEM [1]
  • MICROSC MICROANAL [1]
  • NATURE [1]
  • NUCLEIC ACIDS RES [1]
  • PLOS BIOL [1]
  • STRUCTURE [1]

Software

  • CRYOSPARC [119]
  • RELION [80]
  • UCSF CHIMERAX [35]
  • UCSF CHIMERA [16]
  • COOT [15]
  • CTFFIND [11]
  • IMOD [8]
  • DYNAMO [6]
  • PHENIX [6]
  • WARP [6]
  • CISTEM [4]
  • EMCLARITY [4]
  • GCTF [4]
  • ISOLDE [2]
  • CRYOLO [1]

Microscope

  • TFS KRIOS [93]
  • FEI TITAN KRIOS [52]
  • JEOL CRYO ARM 200 [9]
  • TFS GLACIOS [4]
  • JEOL CRYO ARM 300 [3]
  • FEI TALOS ARCTICA [2]
  • FEI TECNAI ARCTICA [2]
  • FEI TECNAI F30 [1]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [167]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [67]
  • GATAN K3 6K X 4K [62]
  • GATAN K2 SUMMIT 4K X 4K [14]
  • FEI FALCON IV 4K X 4K [10]
  • DIRECT ELECTRON APOLLO 4K X 4K [5]
  • FEI FALCON III 4K X 4K [3]
  • GATAN K3 BIOCONTINUUM 6K X 4K [3]
  • TFS FALCON 4I 4K X 4K [2]
  • OTHER [1]

External links

  • AlphaFold DB [1]
  • PDB [1]
  • PDBe-Kb [1]
  • Pfam [1]
  • UniProt [1]
Sort by: Download
Showing 1 - 10 of 167. Page 1 of 17
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EMD-49577
Download Map
3D View
Bordetella filamentous hemagglutinin FhaB C-terminal domain bound to microtubules
CryoEM
Release date: Feb. 25, 2026
Resolution: 2.42 Å
EM Method: Helical reconstruction
Fitted PDBs: 9nnl

Neumann B, Gonen S

To Be Published

EMD-49766
Download Map
3D View
Bordetella filamentous hemagglutinin FhaB C-terminal domain bound to microtubules, ab initio
CryoEM
Release date: Feb. 25, 2026
Resolution: 3.22 Å
EM Method: Helical reconstruction

Neumann B, Gonen S

To Be Published

EMD-49767
Download Map
3D View
Bordetella filamentous hemagglutinin FhaB C-terminal domain bound to 14-3 microtubules
CryoEM
Release date: Feb. 25, 2026
Resolution: 2.89 Å
EM Method: Helical reconstruction

Neumann B, Gonen S

To Be Published

EMD-49768
Download Map
3D View
Bordetella filamentous hemagglutinin FhaB C-terminal domain bound to 14-3 microtubules, aligned
CryoEM
Release date: Feb. 25, 2026
Resolution: 3.16 Å
EM Method: Helical reconstruction

Neumann B, Gonen S

To Be Published

EMD-49769
Download Map
3D View
Bordetella filamentous hemagglutinin FhaB C-terminal domain bound to microtubules at the seam
CryoEM
Release date: Feb. 25, 2026
Resolution: 2.93 Å
EM Method: Helical reconstruction

Neumann B, Gonen S

To Be Published

EMD-62853
Download Map
3D View
Glycogen phosphorylase from Segatella copri
Release date: Feb. 18, 2026
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 9l6i

Kujirai T, Ehara H, Ito T, Henmi M, Oya E, Kobayashi T, Sekine SI, Kurumizaka H

Sci Adv (2026) 12 pp. eaed1952-eaed1952 [ Pubmed: 41604494 DOI: doi:10.1126/sciadv.aed1952 ]

EMD-63749
Download Map
3D View
Glycogen phosphorylase from Segatella copri bound to glycogen-chain A and E
Release date: Feb. 18, 2026
Resolution: 3.85 Å
EM Method: Single-particle
Fitted PDBs: 9ma8

Kujirai T, Ehara H, Ito T, Henmi M, Oya E, Kobayashi T, Sekine SI, Kurumizaka H

Sci Adv (2026) 12 pp. eaed1952-eaed1952 [ Pubmed: 41604494 DOI: doi:10.1126/sciadv.aed1952 ]

EMD-63814
Download Map
3D View
Glycogen phosphorylase from Segatella copri in complex with AMP
Release date: Feb. 18, 2026
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 9u3a

Kujirai T, Ehara H, Ito T, Henmi M, Oya E, Kobayashi T, Sekine SI, Kurumizaka H

Sci Adv (2026) 12 pp. eaed1952-eaed1952 [ Pubmed: 41604494 DOI: doi:10.1126/sciadv.aed1952 ]

EMD-63816
Download Map
3D View
Glycogen phosphorylase from Segatella copri pentamer in complex with AMP chains D and E
Release date: Feb. 18, 2026
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 9u3k

Kujirai T, Ehara H, Ito T, Henmi M, Oya E, Kobayashi T, Sekine SI, Kurumizaka H

Sci Adv (2026) 12 pp. eaed1952-eaed1952 [ Pubmed: 41604494 DOI: doi:10.1126/sciadv.aed1952 ]

EMD-64491
Download Map
3D View
Glycogen phosphorylase from Segatella copri decamer in complex with AMP
Release date: Feb. 18, 2026
Resolution: 3.58 Å
EM Method: Single-particle
Fitted PDBs: 9utg

Kujirai T, Ehara H, Ito T, Henmi M, Oya E, Kobayashi T, Sekine SI, Kurumizaka H

Sci Adv (2026) 12 pp. eaed1952-eaed1952 [ Pubmed: 41604494 DOI: doi:10.1126/sciadv.aed1952 ]

Sort by: Download
Showing 1 - 10 of 167. Page 1 of 17
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [167]

Current status

  • REL [167]

Sample type

  • Complex [108]
  • Protein [100]
  • Ligand [55]
  • Cellular component [50]
  • Cell [8]
  • RNA [5]
  • DNA [4]
  • Virus [1]

Organism

  • Trypanosoma brucei [46]
  • Homo sapiens [37]
  • Methanosarcina acetivorans [10]
  • Mus musculus [8]
  • Cricetulus griseus [6]
  • Prevotella copri [6]
  • Synthetic construct [6]
  • Toxoplasma gondii [6]
  • Influenza a virus [5]
  • Bordetella bronchiseptica [5]
  • Severe acute respiratory syndrome coronavirus [5]
  • Sus scrofa [5]
  • Rattus norvegicus [4]
  • Arabidopsis thaliana [4]
  • Escherichia coli [4]
  • Oryctolagus cuniculus [4]
  • Pasteurella multocida [3]
  • Flock house virus [3]
  • Bos taurus [3]
  • Human herpesvirus 1 [2]
  • Synechococcus elongatus [2]
  • Oryza sativa [2]
  • Cryptosporidium parvum [2]
  • Saccharomyces cerevisiae [2]
  • Escherichia coli [2]
  • Aequorea victoria [2]
  • Caenorhabditis elegans [2]
  • Salmonella enterica [2]
  • Semliki forest virus [1]
  • Human immunodeficiency virus 1 [1]
  • Human immunodeficiency virus 1 [1]
  • Clostridium perfringens [1]
  • (no species) [1]
  • Thermus thermophilus [1]
  • Azotobacter vinelandii [1]
  • Oryza sativa [1]
  • Schizosaccharomyces pombe [1]
  • Saccharomyces cerevisiae [1]
  • Bat coronavirus hku5 [1]
  • Synechococcus virus scbp4 [1]
  • Mycobacterium tuberculosis [1]
  • Xenopus laevis [1]
  • Clavularia sp. [1]
  • Yersinia entomophaga [1]
  • Bdellovibrio bacteriovorus [1]

EM Method

  • Single-particle [139]
  • Tomography [11]
  • Subtomogram averaging [10]
  • Helical reconstruction [7]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [39]
  • ≥ 3Å and < 4Å [75]
  • ≥ 4Å and < 5Å [24]
  • ≥ 5Å and < 6Å [7]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [6]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 100-250 kDa [1]

Release Date

  • 2026 [24]
  • 2025 [92]
  • 2024 [28]
  • 2023 [19]
  • 2022 [2]
  • 2020 [2]

Author by name

  • Hill KL [46]
  • Kassem AM [46]
  • Langousis G [46]
  • Liu S [46]
  • Shimogawa MM [46]
  • Wang H [46]
  • Wijono A [46]
  • Wohlschlegel JA [46]
  • Xia X [46]
  • Zhou ZH [46]
  • Fukuda Y [11]
  • Inoue T [11]
  • Cate JHD [10]
  • Kivimae RW [10]
  • Nayak DD [10]
  • Nissley AJ [10]
  • Shulgina Y [10]
  • Williams MC [10]
  • Chang Y-W [8]
  • Chang YW [8]
  • Martinez M [8]
  • Soldati-favre D [8]
  • Balaji A [7]
  • Brunger AT [7]
  • Chen S [7]
  • Couoh-cardel S [7]
  • Diao J [7]
  • Esquivies L [7]
  • Guerin A [7]
  • Khan YA [7]
  • Pfuetzner RA [7]
  • Qiu K [7]
  • Striepen B [7]
  • White KI [7]
  • Basiashvili T [6]
  • Ehara H [6]
  • Gonen S [6]
  • Henmi M [6]
  • Hutchings J [6]
  • Ito T [6]
  • Kobayashi T [6]
  • Kujirai T [6]
  • Kurumizaka H [6]
  • Leschziner AE [6]
  • Neumann B [6]
  • Oya E [6]
  • Sekine SI [6]
  • Shobu K [6]
  • Villa E [6]
  • Abu-shmais A [5]
  • Alegrio Louro J [5]
  • Andrews S [5]
  • Bjorkman PJ [5]
  • Fan C [5]
  • Kanekiyo M [5]
  • Maco B [5]
  • Malla T [5]
  • Malla TN [5]
  • Sanz Murillo M [5]
  • Sassa M [5]
  • Tanino H [5]
  • Tsybovsky Y [5]
  • Villagran Suarez A [5]
  • Yamato H [5]
  • Zhou T [5]
  • Al-bassam J [4]
  • Alvarez J [4]
  • Ashaduzzaman M [4]
  • Baharani VA [4]
  • Bieniasz PD [4]
  • Cagatay T [4]
  • Chook YM [4]
  • Cohen AA [4]
  • Daelemans D [4]
  • Delgado-betancourt E [4]
  • Dos Santos Pacheco N [4]
  • Fried SD [4]
  • Fung HYJ [4]
  • Gao H [4]
  • Gharghabi M [4]
  • Gnanapragasam PNP [4]
  • Guo F [4]
  • Hatziioannou T [4]
  • Jacquemyn M [4]
  • Kashyap T [4]
  • Keeffe JR [4]
  • Kwanten B [4]
  • Landesman Y [4]
  • Lapalombella R [4]
  • Lee YJ [4]
  • Liu B [4]
  • Lunghi M [4]
  • Malecek KE [4]
  • Nandi R [4]
  • Niesman AB [4]
  • Permentier B [4]
  • Ready JM [4]
  • Rho S [4]
  • Rorick AV [4]
  • Segovia LN [4]

Author by ORCID

  • Lapalombella R [1]
  • Daelemans D [1]
  • Gharghabi M [1]
  • Fung HYJ [1]
  • Chook YM [1]
  • Wing CE [1]
  • Cagatay T [1]
  • Ready JM [1]
  • Jacquemyn M [1]
  • Kwanten B [1]
  • Permentier B [1]
  • Niesman AB [1]

Journal

  • SCIENCE [46]
  • BIORXIV [28]
  • NAT COMMUN [28]
  • TO BE PUBLISHED [12]
  • PNAS [10]
  • ELIFE [9]
  • SCI ADV [9]
  • J BIOL CHEM [5]
  • NAT STRUCT MOL BIOL [5]
  • CELL [4]
  • PLOS PATHOG [3]
  • BLOOD [2]
  • CELL RES [2]
  • NAT CHEM BIOL [2]
  • NAT PLANTS [2]
  • RNA [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • J MED CHEM [1]
  • MICROSC MICROANAL [1]
  • NATURE [1]
  • NUCLEIC ACIDS RES [1]
  • PLOS BIOL [1]
  • STRUCTURE [1]

Software

  • CRYOSPARC [119]
  • RELION [80]
  • UCSF CHIMERAX [35]
  • UCSF CHIMERA [16]
  • COOT [15]
  • CTFFIND [11]
  • IMOD [8]
  • DYNAMO [6]
  • PHENIX [6]
  • WARP [6]
  • CISTEM [4]
  • EMCLARITY [4]
  • GCTF [4]
  • ISOLDE [2]
  • CRYOLO [1]

Microscope

  • TFS KRIOS [93]
  • FEI TITAN KRIOS [52]
  • JEOL CRYO ARM 200 [9]
  • TFS GLACIOS [4]
  • JEOL CRYO ARM 300 [3]
  • FEI TALOS ARCTICA [2]
  • FEI TECNAI ARCTICA [2]
  • FEI TECNAI F30 [1]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [167]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [67]
  • GATAN K3 6K X 4K [62]
  • GATAN K2 SUMMIT 4K X 4K [14]
  • FEI FALCON IV 4K X 4K [10]
  • DIRECT ELECTRON APOLLO 4K X 4K [5]
  • FEI FALCON III 4K X 4K [3]
  • GATAN K3 BIOCONTINUUM 6K X 4K [3]
  • TFS FALCON 4I 4K X 4K [2]
  • OTHER [1]

External links

  • AlphaFold DB [1]
  • PDB [1]
  • PDBe-Kb [1]
  • Pfam [1]
  • UniProt [1]