Electron Microscopy Data Bank

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Current Database

Current status

Sample type

Organism

Homo sapiens [123]
Escherichia coli [70]
Synthetic construct [36]
Geobacillus stearothermophilus [21]
Thermotoga maritima [18]
Saccharomyces cerevisiae [17]
Mus musculus [14]
Acetivibrio thermocellus [14]
Severe acute respiratory syndrome coronavirus [12]
Arabidopsis thaliana [12]
Enterobacteria phage t4 [9]
Azotobacter vinelandii [8]
Lama glama [8]
Entamoeba histolytica [6]
Morbillivirus hominis [6]
Drosophila melanogaster [6]
Adeno-associated dependoparvovirus a [5]
Paracoccus denitrificans [5]
Mycolicibacterium phage mycofy1 [5]
Salmonella enterica [5]
Jhaorihella thermophila [4]
Escherichia coli [4]
Streptomyces phage phic31 [3]
Measles morbillivirus [3]
Human immunodeficiency virus 1 [3]
(no species) [3]
Methanosarcina mazei [3]
Prevotella buccae [3]
Plasmodium falciparum [3]
Legionella pneumophila [3]
Saccharomyces cerevisiae [3]
Betainfluenzavirus influenzae [3]
Escherichia coli [3]
Betainfluenzavirus influenzae [2]
Streptococcus thermophilus [2]
Staphylococcus aureus [2]
Methanosarcina thermophila [2]
Geobacter sulfurreducens [2]
Sarbecovirus sp. rhgb07 [2]
(no species) [2]
Escherichia phage fcwl1 [2]
Vibrio cholerae [2]
Geobacter sulfurreducens [2]
(no species) [2]
Triticum monococcum [2]
Puccinia graminis [2]
Platynereis dumerilii [2]
Vibrio alginolyticus [2]
Morbillivirus hominis [2]
Coxiella burnetii [2]
Rattus norvegicus [1]
Human herpesvirus 1 [1]
Dengue virus [1]
Influenza b virus [1]
Francisella tularensis [1]
Enterovirus c [1]
Betacoronavirus gravedinis [1]
Clostridium perfringens [1]
Rabbit hemorrhagic disease virus [1]
Haloarcula taiwanensis [1]
Shigella flexneri [1]
Candidatus saccharibacteria bacterium [1]
Chaetomium thermophilum [1]
Escherichia coli [1]
Sulfolobus acidocaldarius [1]
(no species) [1]
Francisella tularensis [1]
Chlorella ohadii [1]
Streptomyces phage phic31 [1]
Geobacillus stearothermophilus [1]
Dna molecule [1]
Enquatrovirus n4 [1]
Nipah virus [1]
Vicugna pacos [1]
Tetrahymena thermophila [1]
Betacoronavirus 1 [1]
Marchantia polymorpha [1]
Babesia divergens [1]
Riemerella anatipestifer [1]
Lablab purpureus [1]
Svunavirus gbsv1 [1]
Maackia amurensis [1]
Actinia fragacea [1]
Pomacea canaliculata [1]
Anthoceros agrestis [1]
Enterovirus d [1]
Enterovirus b [1]
Komagataella pastoris [1]
(no species) [1]
Klebsiella pneumoniae [1]
Saccharomyces cerevisiae [1]
Rhizophagus irregularis [1]
Salmonella enterica [1]
Aequorea victoria [1]
Albugo candida [1]
Danio rerio [1]
Mycobacterium tuberculosis [1]
Photorhabdus heterorhabditis [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Andersson ER [25]
Fontana C [25]
Friebe Sandoz S [25]
Galindo Riera N [25]
Karlsson H [25]
Kosek D [25]
Petzold K [25]
Riad M [25]
Schlagnitweit J [25]
Steiner E [25]
Steinmetzger C [25]
Degenhardt MFS [21]
Li Y [21]
Stagno J [21]
Wang YX [21]
Akif Tezcan F [19]
Cook BD [19]
Erramilli SK [19]
Herzik Jr Ma [19]
Herzik MA [19]
Hou J [19]
Kossiakoff AA [19]
Mcguire KL [19]
Narehood SM [19]
Tezcan FA [19]
Li T [18]
Nosol K [18]
Perozo E [18]
Pietrzak-lichwa K [18]
Schmandt N [18]
Tokarz P [18]
Zhao M [18]
Burger J [16]
Dabrowski M [16]
Diebolder CA [16]
Fluegel T [16]
Flugel T [16]
Guillen Schlippe Yv [16]
Mielke T [16]
Schacherl M [16]
Schroeer B [16]
Spahn CMT [16]
Sprink T [16]
Unbehaun A [16]
Li L [15]
Liu B [15]
Lu G [15]
Czarnocki-cieciura M [14]
Nirwal S [14]
Nowotny M [14]
Park J [14]
Skowronek K [14]
Szczepanowski RH [14]
Zajko W [14]
Rouse SL [13]
Wang Y [13]
Lin J [12]
Zhang Z [12]
Carroni M [11]
Chen H [11]
Cretu C [11]
Moser T [11]
Pena V [11]
Preobraschenski J [11]
Asher WB [10]
Clarke OB [10]
Conigrave AD [10]
Eng E [10]
Fan QR [10]
Frangaj A [10]
Grassucci R [10]
Grasucci R [10]
Hendrickson WA [10]
Hu G [10]
Hu GB [10]
Javitch JA [10]
Li X [10]
Lin X [10]
Lu Z [10]
Manning JJ [10]
Mendez J [10]
Pardon E [10]
Steyaert J [10]
Wang L [10]
Ye J [10]
Zuo H [10]
Adelroth P [9]
Appelgren S [9]
Bourguet M [9]
Chalk R [9]
Dessus AN [9]
Fang Q [9]
Kahle M [9]
Konig F [9]
Ohashi Y [9]
Shao Q [9]
Spokaite S [9]
Wendler P [9]
Williams RL [9]
Bazan F [8]

Author by ORCID

Wang YX [21]
Stagno J [21]
Degenhardt MFS [21]
Herzik Jr Ma [19]
Narehood SM [19]
Akif Tezcan F [19]
Cook BD [19]
Li Y [19]
Mcguire KL [19]
Zhao M [18]
Perozo E [18]
Erramilli SK [18]
Nosol K [18]
Kossiakoff AA [18]
Li T [18]
Hou J [18]
Pietrzak-lichwa K [18]
Diebolder CA [16]
Mielke T [16]
Guillen Schlippe Yv [16]
Spahn CMT [16]
Schacherl M [16]
Dabrowski M [16]
Flugel T [16]
Czarnocki-cieciura M [14]
Nowotny M [14]
Zajko W [14]
Skowronek K [14]
Nirwal S [14]
Moser T [11]
Preobraschenski J [11]
Cretu C [11]
Pena V [11]
Carroni M [11]
Javitch JA [10]
Asher WB [10]
Pardon E [10]
Mendez J [10]
Steyaert J [10]
Lu Z [10]
Frangaj A [10]
Liu B [10]
Manning JJ [10]
Conigrave AD [10]
Eng E [10]
Zuo H [10]
Fan QR [10]
Hendrickson WA [10]
Hu GB [10]
Ye J [10]
Williams RL [9]
Kahle M [9]
Spokaite S [9]
Ohashi Y [9]
Bourguet M [9]
Wendler P [9]
Adelroth P [9]
Appelgren S [9]
Dessus AN [9]
Pusapati GV [8]
Kong JH [8]
Gagnon MG [8]
Lin J [7]
Nguyen HTV [7]
Rybak MY [7]
Zhu Y [7]
Li L [7]
Ma C [7]
Kaushal PS [6]
Pape C [6]
Huang KA [6]
Zyla D [6]
Wichmann C [6]
Leidner F [6]
Kim TH [6]
Esch K [6]
Ruan Z [6]
Grubmuller H [6]
Lin TY [6]
Brose N [6]
Strenzke N [6]
Chen H [6]
Trebilcock A [6]
Mutschall S [6]
Benseler F [6]
Wang D [6]
Hsu PH [6]
Evdokimova N [6]
Horne JE [5]
Temiakov D [5]
Itoh Y [5]
Shih HA [5]
Zhou Y [5]
Nayak AR [5]
Horne RJ [5]
Schaberle TF [5]
Chang YC [5]
Wu KP [5]
Chen T [5]
Radford SE [5]

Journal

NAT COMMUN [118]
BIORXIV [56]
TO BE PUBLISHED [53]
PNAS [35]
NAT STRUCT MOL BIOL [14]
MOL CELL [13]
NATURE [12]
J MOL BIOL [11]
SCI ADV [11]
STRUCTURE [10]
CELL REP [9]
ELIFE [9]
CELL RES [8]
COMMUN BIOL [6]
EMBO J [5]
ACTA CRYSTALLOGR D STRUCT BIOL [4]
CELL HOST MICROBE [4]
NUCLEIC ACIDS RES [4]
SCIENCE [3]
J BIOL CHEM [2]
J CELL BIOL [2]
J MED CHEM [2]
NAT PLANTS [2]
NAT PROTOC [2]
PLOS PATHOG [2]
PROTEIN CELL [2]
ANGEW CHEM INT ED ENGL [1]
BIOMATER SCI [1]
CHEM.COMMUN.(CAMB.) [1]
CHEMPLUSCHEM [1]
COMMUN CHEM [1]
J VIROL [1]
J.MUSCLE RES.CELL.MOTIL. [1]
MOL PLANT [1]
MOL THER [1]
MOL.BIOL.EVOL. [1]
NPJ VACCINES [1]
PROTEIN SCI [1]
RES SQ [1]
SOIL BIOL.BIOCHEM. [1]

Software

Microscope

Electron Source

Film or detector model

External links

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EMDB [403]

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EMD-58663

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3D View

Unbinned map of EMD-53938

CryoEM

Release date: July 8, 2026
Resolution: 2.97 Å
EM Method: Single-particle

Thazuk N, Newman J

To Be Published

EMD-71833

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3D View

Cryo-EM structure of the DCAF11 E3 ligase bound to the DDX18 helicase mediated by GSH-M12 DDX18 local refinement

Focused map

CryoEM

Release date: July 1, 2026
Resolution: 2.38 Å
EM Method: Single-particle

Wachter F, Jin CY, Yoon H, Ebert BL, Fischer ES

To Be Published

EMD-71834

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3D View

Cryo-EM structure of the DCAF11 E3 ligase bound to the DDX18 helicase mediated by GSH-M12 consensus refinement

Consensus map

CryoEM

Release date: July 1, 2026
Resolution: 2.35 Å
EM Method: Single-particle

Wachter F, Jin CY, Yoon H, Ebert BL, Fischer ES

To Be Published

EMD-72146

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3D View

Structure of the Measles virus Hemagglutinin ectodomain in complex with neutralizing antibody 1C02

CryoEM

Release date: July 1, 2026
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 9q1z
Q-score: 0.552

Acciani M, Zyla D, Niemeyer G, Harkins S, Parekh D, Pawlack E, Lacarbonara D, Kansara D, Ackerman ME, Niewiesk S, Porotto M, Hastie KM, Saphire EO

Cell Host Microbe (2026) 34 pp. 1067-1081.e12 [ Pubmed: 42102820 DOI: doi:10.1016/j.chom.2026.04.010 ]

EMD-72147

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Structure of the Measles virus Hemagglutinin ectodomain in complex with neutralizing antibody 1C08

CryoEM

Release date: July 1, 2026
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 9q20
Q-score: 0.504

Acciani M, Zyla D, Niemeyer G, Harkins S, Parekh D, Pawlack E, Lacarbonara D, Kansara D, Ackerman ME, Niewiesk S, Porotto M, Hastie KM, Saphire EO

Cell Host Microbe (2026) 34 pp. 1067-1081.e12 [ Pubmed: 42102820 DOI: doi:10.1016/j.chom.2026.04.010 ]

EMD-72149

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Structure of the Measles virus Hemagglutinin ectodomain in complex with two neutralizing antibodies 1C08 and 4D08

CryoEM

Release date: July 1, 2026
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 9q24
Q-score: 0.473

Acciani M, Zyla D, Niemeyer G, Harkins S, Parekh D, Pawlack E, Lacarbonara D, Kansara D, Ackerman ME, Niewiesk S, Porotto M, Hastie KM, Saphire EO

Cell Host Microbe (2026) 34 pp. 1067-1081.e12 [ Pubmed: 42102820 DOI: doi:10.1016/j.chom.2026.04.010 ]

EMD-72151

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Structure of the Measles virus Fusion glycoprotein ectodomain in complex with two neutralizing antibodies 4F09 and 3A12

CryoEM

Release date: July 1, 2026
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 9q26
Q-score: 0.628

Acciani M, Zyla D, Niemeyer G, Harkins S, Parekh D, Pawlack E, Lacarbonara D, Kansara D, Ackerman ME, Niewiesk S, Porotto M, Hastie KM, Saphire EO

Cell Host Microbe (2026) 34 pp. 1067-1081.e12 [ Pubmed: 42102820 DOI: doi:10.1016/j.chom.2026.04.010 ]

EMD-74415

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HSV-1 UL32 tripentamer

CryoEM

Release date: July 1, 2026
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 9zly
Q-score: 0.499

Bailey EJ, Devarkar SC, Szczepaniak R, Meissner LM, Chen X, Wu C, Weller SK, Xiong Y, Didychuk AL

bioRxiv (2026) [ Pubmed: 41648366 DOI: doi:10.64898/2026.01.22.701024 ]

EMD-55863

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Raw data

Structure of echovirus 18 in complex with neonatal Fc receptor

CryoEM

Release date: June 24, 2026
Resolution: 2.26 Å
EM Method: Single-particle
Fitted PDBs: 9tf0
Q-score: 0.68

Mukhamedova L, Plevka P, Buchta D, Fuzik T, Trebichalska Z, Novacek J, Levdansky Y, Moravcova J, Hrebik D, Tollefsrud TG, Andersen JT

To Be Published

EMD-57361

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The complex of A1AT-NHK with the ERAD misfolded glycoprotein checkpoint complex from Chaetomium thermophilum EDEM:PDI heterodimer .

CryoEM

Release date: June 24, 2026
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 29te
Q-score: 0.236

Hitchman CJ, Lia A, Chiritoiu GN, Munteanu CVA, Ortigosa JR, Ghenea S, Savva C, Wada I, De Benedictis M, Tax G, Bayo Y, Crescioli I, Alonzi DL, Quigley A, Modenutti CP, Petrescu SM, Santino A, Gooptu B, Hosokawa N, Roversi P

bioRxiv (2025) [ DOI: doi:10.1101/2025.01.29.635535 ]

Sort by: Download

Showing 1 - 10 of 403. Page 1 of 41

Display:

Statistics

Download

Select database:

EMDB [403]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [123]
Escherichia coli [70]
Synthetic construct [36]
Geobacillus stearothermophilus [21]
Thermotoga maritima [18]
Saccharomyces cerevisiae [17]
Mus musculus [14]
Acetivibrio thermocellus [14]
Severe acute respiratory syndrome coronavirus [12]
Arabidopsis thaliana [12]
Enterobacteria phage t4 [9]
Azotobacter vinelandii [8]
Lama glama [8]
Entamoeba histolytica [6]
Morbillivirus hominis [6]
Drosophila melanogaster [6]
Adeno-associated dependoparvovirus a [5]
Paracoccus denitrificans [5]
Mycolicibacterium phage mycofy1 [5]
Salmonella enterica [5]
Jhaorihella thermophila [4]
Escherichia coli [4]
Streptomyces phage phic31 [3]
Measles morbillivirus [3]
Human immunodeficiency virus 1 [3]
(no species) [3]
Methanosarcina mazei [3]
Prevotella buccae [3]
Plasmodium falciparum [3]
Legionella pneumophila [3]
Saccharomyces cerevisiae [3]
Betainfluenzavirus influenzae [3]
Escherichia coli [3]
Betainfluenzavirus influenzae [2]
Streptococcus thermophilus [2]
Staphylococcus aureus [2]
Methanosarcina thermophila [2]
Geobacter sulfurreducens [2]
Sarbecovirus sp. rhgb07 [2]
(no species) [2]
Escherichia phage fcwl1 [2]
Vibrio cholerae [2]
Geobacter sulfurreducens [2]
(no species) [2]
Triticum monococcum [2]
Puccinia graminis [2]
Platynereis dumerilii [2]
Vibrio alginolyticus [2]
Morbillivirus hominis [2]
Coxiella burnetii [2]
Rattus norvegicus [1]
Human herpesvirus 1 [1]
Dengue virus [1]
Influenza b virus [1]
Francisella tularensis [1]
Enterovirus c [1]
Betacoronavirus gravedinis [1]
Clostridium perfringens [1]
Rabbit hemorrhagic disease virus [1]
Haloarcula taiwanensis [1]
Shigella flexneri [1]
Candidatus saccharibacteria bacterium [1]
Chaetomium thermophilum [1]
Escherichia coli [1]
Sulfolobus acidocaldarius [1]
(no species) [1]
Francisella tularensis [1]
Chlorella ohadii [1]
Streptomyces phage phic31 [1]
Geobacillus stearothermophilus [1]
Dna molecule [1]
Enquatrovirus n4 [1]
Nipah virus [1]
Vicugna pacos [1]
Tetrahymena thermophila [1]
Betacoronavirus 1 [1]
Marchantia polymorpha [1]
Babesia divergens [1]
Riemerella anatipestifer [1]
Lablab purpureus [1]
Svunavirus gbsv1 [1]
Maackia amurensis [1]
Actinia fragacea [1]
Pomacea canaliculata [1]
Anthoceros agrestis [1]
Enterovirus d [1]
Enterovirus b [1]
Komagataella pastoris [1]
(no species) [1]
Klebsiella pneumoniae [1]
Saccharomyces cerevisiae [1]
Rhizophagus irregularis [1]
Salmonella enterica [1]
Aequorea victoria [1]
Albugo candida [1]
Danio rerio [1]
Mycobacterium tuberculosis [1]
Photorhabdus heterorhabditis [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Andersson ER [25]
Fontana C [25]
Friebe Sandoz S [25]
Galindo Riera N [25]
Karlsson H [25]
Kosek D [25]
Petzold K [25]
Riad M [25]
Schlagnitweit J [25]
Steiner E [25]
Steinmetzger C [25]
Degenhardt MFS [21]
Li Y [21]
Stagno J [21]
Wang YX [21]
Akif Tezcan F [19]
Cook BD [19]
Erramilli SK [19]
Herzik Jr Ma [19]
Herzik MA [19]
Hou J [19]
Kossiakoff AA [19]
Mcguire KL [19]
Narehood SM [19]
Tezcan FA [19]
Li T [18]
Nosol K [18]
Perozo E [18]
Pietrzak-lichwa K [18]
Schmandt N [18]
Tokarz P [18]
Zhao M [18]
Burger J [16]
Dabrowski M [16]
Diebolder CA [16]
Fluegel T [16]
Flugel T [16]
Guillen Schlippe Yv [16]
Mielke T [16]
Schacherl M [16]
Schroeer B [16]
Spahn CMT [16]
Sprink T [16]
Unbehaun A [16]
Li L [15]
Liu B [15]
Lu G [15]
Czarnocki-cieciura M [14]
Nirwal S [14]
Nowotny M [14]
Park J [14]
Skowronek K [14]
Szczepanowski RH [14]
Zajko W [14]
Rouse SL [13]
Wang Y [13]
Lin J [12]
Zhang Z [12]
Carroni M [11]
Chen H [11]
Cretu C [11]
Moser T [11]
Pena V [11]
Preobraschenski J [11]
Asher WB [10]
Clarke OB [10]
Conigrave AD [10]
Eng E [10]
Fan QR [10]
Frangaj A [10]
Grassucci R [10]
Grasucci R [10]
Hendrickson WA [10]
Hu G [10]
Hu GB [10]
Javitch JA [10]
Li X [10]
Lin X [10]
Lu Z [10]
Manning JJ [10]
Mendez J [10]
Pardon E [10]
Steyaert J [10]
Wang L [10]
Ye J [10]
Zuo H [10]
Adelroth P [9]
Appelgren S [9]
Bourguet M [9]
Chalk R [9]
Dessus AN [9]
Fang Q [9]
Kahle M [9]
Konig F [9]
Ohashi Y [9]
Shao Q [9]
Spokaite S [9]
Wendler P [9]
Williams RL [9]
Bazan F [8]

Author by ORCID

Wang YX [21]
Stagno J [21]
Degenhardt MFS [21]
Herzik Jr Ma [19]
Narehood SM [19]
Akif Tezcan F [19]
Cook BD [19]
Li Y [19]
Mcguire KL [19]
Zhao M [18]
Perozo E [18]
Erramilli SK [18]
Nosol K [18]
Kossiakoff AA [18]
Li T [18]
Hou J [18]
Pietrzak-lichwa K [18]
Diebolder CA [16]
Mielke T [16]
Guillen Schlippe Yv [16]
Spahn CMT [16]
Schacherl M [16]
Dabrowski M [16]
Flugel T [16]
Czarnocki-cieciura M [14]
Nowotny M [14]
Zajko W [14]
Skowronek K [14]
Nirwal S [14]
Moser T [11]
Preobraschenski J [11]
Cretu C [11]
Pena V [11]
Carroni M [11]
Javitch JA [10]
Asher WB [10]
Pardon E [10]
Mendez J [10]
Steyaert J [10]
Lu Z [10]
Frangaj A [10]
Liu B [10]
Manning JJ [10]
Conigrave AD [10]
Eng E [10]
Zuo H [10]
Fan QR [10]
Hendrickson WA [10]
Hu GB [10]
Ye J [10]
Williams RL [9]
Kahle M [9]
Spokaite S [9]
Ohashi Y [9]
Bourguet M [9]
Wendler P [9]
Adelroth P [9]
Appelgren S [9]
Dessus AN [9]
Pusapati GV [8]
Kong JH [8]
Gagnon MG [8]
Lin J [7]
Nguyen HTV [7]
Rybak MY [7]
Zhu Y [7]
Li L [7]
Ma C [7]
Kaushal PS [6]
Pape C [6]
Huang KA [6]
Zyla D [6]
Wichmann C [6]
Leidner F [6]
Kim TH [6]
Esch K [6]
Ruan Z [6]
Grubmuller H [6]
Lin TY [6]
Brose N [6]
Strenzke N [6]
Chen H [6]
Trebilcock A [6]
Mutschall S [6]
Benseler F [6]
Wang D [6]
Hsu PH [6]
Evdokimova N [6]
Horne JE [5]
Temiakov D [5]
Itoh Y [5]
Shih HA [5]
Zhou Y [5]
Nayak AR [5]
Horne RJ [5]
Schaberle TF [5]
Chang YC [5]
Wu KP [5]
Chen T [5]
Radford SE [5]

Journal

NAT COMMUN [118]
BIORXIV [56]
TO BE PUBLISHED [53]
PNAS [35]
NAT STRUCT MOL BIOL [14]
MOL CELL [13]
NATURE [12]
J MOL BIOL [11]
SCI ADV [11]
STRUCTURE [10]
CELL REP [9]
ELIFE [9]
CELL RES [8]
COMMUN BIOL [6]
EMBO J [5]
ACTA CRYSTALLOGR D STRUCT BIOL [4]
CELL HOST MICROBE [4]
NUCLEIC ACIDS RES [4]
SCIENCE [3]
J BIOL CHEM [2]
J CELL BIOL [2]
J MED CHEM [2]
NAT PLANTS [2]
NAT PROTOC [2]
PLOS PATHOG [2]
PROTEIN CELL [2]
ANGEW CHEM INT ED ENGL [1]
BIOMATER SCI [1]
CHEM.COMMUN.(CAMB.) [1]
CHEMPLUSCHEM [1]
COMMUN CHEM [1]
J VIROL [1]
J.MUSCLE RES.CELL.MOTIL. [1]
MOL PLANT [1]
MOL THER [1]
MOL.BIOL.EVOL. [1]
NPJ VACCINES [1]
PROTEIN SCI [1]
RES SQ [1]
SOIL BIOL.BIOCHEM. [1]

Software

Microscope

Electron Source

Film or detector model

External links