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merging_software:XSCALE

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Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Protein [11]
  • Complex [9]
  • Ligand [9]
  • Cellular component [2]

Organism

  • Parengyodontium album [6]
  • Homo sapiens [4]
  • Hathewaya histolytica [1]

EM Method

  • Electron Crystallography [11]

Resolution

  • < 2Å [7]
  • ≥ 2Å and < 3Å [1]

Model molecular weight

  • 0-50 kDa [10]
  • 50-100 kDa [1]

Release Date

  • 2026 [3]
  • 2025 [3]
  • 2024 [1]
  • 2018 [4]

Author by name

  • Gonen T [10]
  • Clabbers MTB [6]
  • Hattne J [5]
  • Cascio D [4]
  • Eisenberg DS [4]
  • Martynowycz MW [4]
  • Sawaya MR [4]
  • Boyer DR [3]
  • Martynoqycz MW [3]
  • Rodriguez JA [3]
  • Guenther EL [2]
  • Murray K [2]
  • Trinh H [2]
  • Bu G [1]
  • Cao Q [1]
  • Ge P [1]
  • Glabe CG [1]
  • Griner SL [1]
  • Hughes MP [1]
  • Jiang L [1]
  • Krotee P [1]
  • Lee J [1]
  • Lu J [1]
  • Philipp S [1]
  • Ruma YN [1]
  • Saelices L [1]
  • Seidler P [1]
  • Seidler PM [1]
  • Shi D [1]
  • Zhou ZH [1]

Author by ORCID

  • Clabbers MTB [6]
  • Gonen T [6]
  • Hattne J [5]
  • Sawaya MR [4]
  • Martynowycz MW [3]
  • Eisenberg DS [3]
  • Trinh H [2]
  • Rodriguez JA [1]
  • Seidler PM [1]
  • Saelices L [1]
  • Ge P [1]
  • Griner SL [1]
  • Lu J [1]

Journal

  • BIORXIV [4]
  • NAT STRUCT MOL BIOL [2]
  • STRUCT DYN. [2]
  • J BIOL CHEM [1]
  • J STRUCT BIOL X [1]
  • NAT CHEM [1]
  • NAT COMMUN [1]

Software

  • XSCALE [11]
  • PHASER [9]
  • XDS [7]
  • PHENIX [6]
  • PHENIX.REFINE [1]
  • SHELXD [1]

Microscope

  • TFS KRIOS [6]
  • FEI TECNAI 20 [2]
  • FEI TECNAI F20 [2]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • FEI FALCON IV 4K X 4K [7]
  • TVIPS TEMCAM-F416 4K X 4K [4]

External links

  • AlphaFold DB [11]
  • PDB [11]
  • UniProt [11]
  • PDBe-Kb [10]
  • ChEBI [9]
  • ChEMBL [9]
  • DrugBank [9]
  • InterPro [4]
  • Gene Ontology [3]
  • Complex Portal [1]
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Showing 1 - 10 of 11. Page 1 of 2
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EMD-48783
Download Map
3D View
Structure of proteinase K from energy-filtered MicroED data using a 5 eV slit width
CryoEM
Release date: July 29, 2026
Resolution: 1.2 Å
EM Method: Electron Crystallography
Fitted PDBs: 9n0f

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

bioRxiv (2025) [ Pubmed: 40060527 DOI: doi:10.1101/2025.02.24.639939 ]

EMD-48784
Download Map
3D View
Structure of proteinase K from energy-filtered MicroED data using a 10 eV slit width
CryoEM
Release date: July 29, 2026
Resolution: 1.2 Å
EM Method: Electron Crystallography
Fitted PDBs: 9n0g

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

bioRxiv (2025) [ Pubmed: 40060527 DOI: doi:10.1101/2025.02.24.639939 ]

EMD-48785
Download Map
3D View
Structure of proteinase K from energy-filtered MicroED data using a 20 eV slit width
CryoEM
Release date: July 29, 2026
Resolution: 1.2 Å
EM Method: Electron Crystallography
Fitted PDBs: 9n0h

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

bioRxiv (2025) [ Pubmed: 40060527 DOI: doi:10.1101/2025.02.24.639939 ]

EMD-70378
Download Map
3D View
MicroED structure of proteinase K without energy filtering
CryoEM
Release date: May 28, 2025
Resolution: 1.3 Å
EM Method: Electron Crystallography
Fitted PDBs: 9odv
Q-score: 0.763
Similar entry percentile: 20%

Clabbers MTB, Gonen T

Struct Dyn. (2025) 12 pp. 034702-034702 [ DOI: doi:10.1063/4.0000755 Pubmed: 40370641 ]

EMD-70379
Download Map
3D View
MicroED structure of proteinase K with energy filtering
CryoEM
Release date: May 28, 2025
Resolution: 1.3 Å
EM Method: Electron Crystallography
Fitted PDBs: 9odw
Q-score: 0.767
Similar entry percentile: 22%

Clabbers MTB, Gonen T

Struct Dyn. (2025) 12 pp. 034702-034702 [ DOI: doi:10.1063/4.0000755 Pubmed: 40370641 ]

EMD-46871
Download Map
3D View
Structure of proteinase K from energy-filtered MicroED data
CryoEM
Release date: March 19, 2025
Resolution: 1.09 Å
EM Method: Electron Crystallography
Fitted PDBs: 9dho

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

Nat Commun (2025) 16 pp. 2247-2247 [ Pubmed: 40050283 DOI: doi:10.1038/s41467-025-57425-1 ]

EMD-45623
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3D View
MicroED structure of the C11 cysteine protease clostripain
CryoEM
Release date: Aug. 14, 2024
Resolution: 2.5 Å
EM Method: Electron Crystallography
Fitted PDBs: 9cip

Ruma YN, Bu G, Hattne J, Gonen T

J Struct Biol X (2024) 10 pp. 100107-100107 [ Pubmed: 39100863 DOI: doi:10.1016/j.yjsbx.2024.100107 ]

EMD-8857
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3D View
MicroED structure of the segment, NFGEFS, from the A315E familial variant of the low complexity domain of TDP-43, residues 312-317
CryoEM
Release date: May 23, 2018
Resolution: 1.0 Å
EM Method: Electron Crystallography
Fitted PDBs: 5wkb
Q-score: 0.383
Similar entry percentile: 6%

Guenther EL, Cao Q, Trinh H, Lu J, Sawaya MR, Cascio D, Boyer DR, Rodriguez JA, Hughes MP, Eisenberg DS

Nat Struct Mol Biol (2018) 25 pp. 463-471 [ Pubmed: 29786080 DOI: doi:10.1038/s41594-018-0064-2 ]

EMD-8765
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3D View
MicroED structure of the segment, DLIIKGISVHI, from the RRM2 of TDP-43, residues 247-257
CryoEM
Release date: Feb. 21, 2018
EM Method: Electron Crystallography
Fitted PDBs: 5w52

Guenther EL, Ge P, Trinh H, Sawaya MR, Cascio D, Boyer DR, Gonen T, Zhou ZH, Eisenberg DS

Nat Struct Mol Biol (2018) 25 pp. 311-319 [ DOI: doi:10.1038/s41594-018-0045-5 Pubmed: 29531287 ]

EMD-8635
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3D View
VQIINK, Structure of the amyloid-spine from microtubule associated protein tau Repeat 2
CryoEM
Release date: Feb. 7, 2018
EM Method: Electron Crystallography
Fitted PDBs: 5v5c

Seidler PM, Boyer DR, Rodriguez JA, Sawaya MR, Cascio D, Murray K, Gonen T, Eisenberg DS

Nat Chem (2018) 10 pp. 170-176 [ Pubmed: 29359764 DOI: doi:10.1038/nchem.2889 ]

Sort by: Download
Showing 1 - 10 of 11. Page 1 of 2
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Protein [11]
  • Complex [9]
  • Ligand [9]
  • Cellular component [2]

Organism

  • Parengyodontium album [6]
  • Homo sapiens [4]
  • Hathewaya histolytica [1]

EM Method

  • Electron Crystallography [11]

Resolution

  • < 2Å [7]
  • ≥ 2Å and < 3Å [1]

Model molecular weight

  • 0-50 kDa [10]
  • 50-100 kDa [1]

Release Date

  • 2026 [3]
  • 2025 [3]
  • 2024 [1]
  • 2018 [4]

Author by name

  • Gonen T [10]
  • Clabbers MTB [6]
  • Hattne J [5]
  • Cascio D [4]
  • Eisenberg DS [4]
  • Martynowycz MW [4]
  • Sawaya MR [4]
  • Boyer DR [3]
  • Martynoqycz MW [3]
  • Rodriguez JA [3]
  • Guenther EL [2]
  • Murray K [2]
  • Trinh H [2]
  • Bu G [1]
  • Cao Q [1]
  • Ge P [1]
  • Glabe CG [1]
  • Griner SL [1]
  • Hughes MP [1]
  • Jiang L [1]
  • Krotee P [1]
  • Lee J [1]
  • Lu J [1]
  • Philipp S [1]
  • Ruma YN [1]
  • Saelices L [1]
  • Seidler P [1]
  • Seidler PM [1]
  • Shi D [1]
  • Zhou ZH [1]

Author by ORCID

  • Clabbers MTB [6]
  • Gonen T [6]
  • Hattne J [5]
  • Sawaya MR [4]
  • Martynowycz MW [3]
  • Eisenberg DS [3]
  • Trinh H [2]
  • Rodriguez JA [1]
  • Seidler PM [1]
  • Saelices L [1]
  • Ge P [1]
  • Griner SL [1]
  • Lu J [1]

Journal

  • BIORXIV [4]
  • NAT STRUCT MOL BIOL [2]
  • STRUCT DYN. [2]
  • J BIOL CHEM [1]
  • J STRUCT BIOL X [1]
  • NAT CHEM [1]
  • NAT COMMUN [1]

Software

  • XSCALE [11]
  • PHASER [9]
  • XDS [7]
  • PHENIX [6]
  • PHENIX.REFINE [1]
  • SHELXD [1]

Microscope

  • TFS KRIOS [6]
  • FEI TECNAI 20 [2]
  • FEI TECNAI F20 [2]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • FEI FALCON IV 4K X 4K [7]
  • TVIPS TEMCAM-F416 4K X 4K [4]

External links

  • AlphaFold DB [11]
  • PDB [11]
  • UniProt [11]
  • PDBe-Kb [10]
  • ChEBI [9]
  • ChEMBL [9]
  • DrugBank [9]
  • InterPro [4]
  • Gene Ontology [3]
  • Complex Portal [1]