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merging_software:XSCAL*

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Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Protein [8]
  • Complex [6]
  • Ligand [6]
  • Cellular component [2]

Organism

  • Homo sapiens [4]
  • Parengyodontium album [3]
  • Hathewaya histolytica [1]

EM Method

  • Electron Crystallography [8]

Resolution

  • < 2Å [4]
  • ≥ 2Å and < 3Å [1]

Model molecular weight

  • 0-50 kDa [7]
  • 50-100 kDa [1]

Release Date

  • 2025 [3]
  • 2024 [1]
  • 2018 [4]

Author by name

  • Gonen T [7]
  • Cascio D [4]
  • Eisenberg DS [4]
  • Sawaya MR [4]
  • Boyer DR [3]
  • Clabbers MTB [3]
  • Martynoqycz MW [3]
  • Rodriguez JA [3]
  • Guenther EL [2]
  • Hattne J [2]
  • Murray K [2]
  • Trinh H [2]
  • Bu G [1]
  • Cao Q [1]
  • Ge P [1]
  • Glabe CG [1]
  • Griner SL [1]
  • Hughes MP [1]
  • Jiang L [1]
  • Krotee P [1]
  • Lee J [1]
  • Lu J [1]
  • Martynowycz MW [1]
  • Philipp S [1]
  • Ruma YN [1]
  • Saelices L [1]
  • Seidler P [1]
  • Seidler PM [1]
  • Shi D [1]
  • Zhou ZH [1]

Author by ORCID

  • Sawaya MR [4]
  • Clabbers MTB [3]
  • Gonen T [3]
  • Eisenberg DS [3]
  • Hattne J [2]
  • Trinh H [2]
  • Rodriguez JA [1]
  • Seidler PM [1]
  • Saelices L [1]
  • Griner SL [1]
  • Lu J [1]

Journal

  • NAT STRUCT MOL BIOL [2]
  • STRUCT DYN. [2]
  • BIORXIV [1]
  • J BIOL CHEM [1]
  • J STRUCT BIOL X [1]
  • NAT CHEM [1]
  • NAT COMMUN [1]

Software

  • XSCALE [8]
  • PHASER [6]
  • XDS [4]
  • PHENIX [3]
  • PHENIX.REFINE [1]
  • SHELXD [1]

Microscope

  • TFS KRIOS [3]
  • FEI TECNAI 20 [2]
  • FEI TECNAI F20 [2]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • FEI FALCON IV 4K X 4K [4]
  • TVIPS TEMCAM-F416 4K X 4K [4]

External links

  • AlphaFold DB [8]
  • PDB [8]
  • UniProt [8]
  • PDBe-Kb [7]
  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
  • InterPro [4]
  • Gene Ontology [3]
  • Complex Portal [1]
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Showing 1 - 8 of 8. Page 1 of 1
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EMD-70378
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3D View
MicroED structure of proteinase K without energy filtering
Release date: May 28, 2025
Resolution: 1.3 Å
EM Method: Electron Crystallography
Fitted PDBs: 9odv
Q-score: 0.763

Clabbers MTB, Gonen T

Struct Dyn. (2025) 12 pp. 034702-034702 [ Pubmed: 40370641 DOI: doi:10.1063/4.0000755 ]

EMD-70379
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3D View
MicroED structure of proteinase K with energy filtering
Release date: May 28, 2025
Resolution: 1.3 Å
EM Method: Electron Crystallography
Fitted PDBs: 9odw
Q-score: 0.767

Clabbers MTB, Gonen T

Struct Dyn. (2025) 12 pp. 034702-034702 [ Pubmed: 40370641 DOI: doi:10.1063/4.0000755 ]

EMD-46871
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3D View
Structure of proteinase K from energy-filtered MicroED data
Release date: March 19, 2025
Resolution: 1.09 Å
EM Method: Electron Crystallography
Fitted PDBs: 9dho

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

Nat Commun (2025) 16 pp. 2247-2247 [ Pubmed: 40050283 DOI: doi:10.1038/s41467-025-57425-1 ]

EMD-45623
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MicroED structure of the C11 cysteine protease clostripain
Release date: Aug. 14, 2024
Resolution: 2.5 Å
EM Method: Electron Crystallography
Fitted PDBs: 9cip

Ruma YN, Bu G, Hattne J, Gonen T

J Struct Biol X (2024) 10 pp. 100107-100107 [ Pubmed: 39100863 DOI: doi:10.1016/j.yjsbx.2024.100107 ]

EMD-8857
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MicroED structure of the segment, NFGEFS, from the A315E familial variant of the low complexity domain of TDP-43, residues 312-317
Release date: May 23, 2018
Resolution: 1.0 Å
EM Method: Electron Crystallography
Fitted PDBs: 5wkb
Q-score: 0.383

Guenther EL, Cao Q, Trinh H, Lu J, Sawaya MR, Cascio D, Boyer DR, Rodriguez JA, Hughes MP, Eisenberg DS

Nat Struct Mol Biol (2018) 25 pp. 463-471 [ DOI: doi:10.1038/s41594-018-0064-2 Pubmed: 29786080 ]

EMD-8765
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MicroED structure of the segment, DLIIKGISVHI, from the RRM2 of TDP-43, residues 247-257
Release date: Feb. 21, 2018
EM Method: Electron Crystallography
Fitted PDBs: 5w52

Guenther EL, Ge P, Trinh H, Sawaya MR, Cascio D, Boyer DR, Gonen T, Zhou ZH, Eisenberg DS

Nat Struct Mol Biol (2018) 25 pp. 311-319 [ Pubmed: 29531287 DOI: doi:10.1038/s41594-018-0045-5 ]

EMD-8635
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VQIINK, Structure of the amyloid-spine from microtubule associated protein tau Repeat 2
Release date: Feb. 7, 2018
EM Method: Electron Crystallography
Fitted PDBs: 5v5c

Seidler PM, Boyer DR, Rodriguez JA, Sawaya MR, Cascio D, Murray K, Gonen T, Eisenberg DS

Nat Chem (2018) 10 pp. 170-176 [ DOI: doi:10.1038/nchem.2889 Pubmed: 29359764 ]

EMD-8720
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3D View
VGSNKGAIIGL from Amyloid Beta determined by MicroED
Release date: Jan. 3, 2018
EM Method: Electron Crystallography
Fitted PDBs: 5vos

Krotee P, Griner SL, Sawaya MR, Cascio D, Rodriguez JA, Shi D, Philipp S, Murray K, Saelices L, Lee J, Seidler P, Glabe CG, Jiang L, Gonen T, Eisenberg DS

J Biol Chem (2018) 293 pp. 2888-2902 [ Pubmed: 29282295 DOI: doi:10.1074/jbc.M117.806109 ]

Sort by: Download
Showing 1 - 8 of 8. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Protein [8]
  • Complex [6]
  • Ligand [6]
  • Cellular component [2]

Organism

  • Homo sapiens [4]
  • Parengyodontium album [3]
  • Hathewaya histolytica [1]

EM Method

  • Electron Crystallography [8]

Resolution

  • < 2Å [4]
  • ≥ 2Å and < 3Å [1]

Model molecular weight

  • 0-50 kDa [7]
  • 50-100 kDa [1]

Release Date

  • 2025 [3]
  • 2024 [1]
  • 2018 [4]

Author by name

  • Gonen T [7]
  • Cascio D [4]
  • Eisenberg DS [4]
  • Sawaya MR [4]
  • Boyer DR [3]
  • Clabbers MTB [3]
  • Martynoqycz MW [3]
  • Rodriguez JA [3]
  • Guenther EL [2]
  • Hattne J [2]
  • Murray K [2]
  • Trinh H [2]
  • Bu G [1]
  • Cao Q [1]
  • Ge P [1]
  • Glabe CG [1]
  • Griner SL [1]
  • Hughes MP [1]
  • Jiang L [1]
  • Krotee P [1]
  • Lee J [1]
  • Lu J [1]
  • Martynowycz MW [1]
  • Philipp S [1]
  • Ruma YN [1]
  • Saelices L [1]
  • Seidler P [1]
  • Seidler PM [1]
  • Shi D [1]
  • Zhou ZH [1]

Author by ORCID

  • Sawaya MR [4]
  • Clabbers MTB [3]
  • Gonen T [3]
  • Eisenberg DS [3]
  • Hattne J [2]
  • Trinh H [2]
  • Rodriguez JA [1]
  • Seidler PM [1]
  • Saelices L [1]
  • Griner SL [1]
  • Lu J [1]

Journal

  • NAT STRUCT MOL BIOL [2]
  • STRUCT DYN. [2]
  • BIORXIV [1]
  • J BIOL CHEM [1]
  • J STRUCT BIOL X [1]
  • NAT CHEM [1]
  • NAT COMMUN [1]

Software

  • XSCALE [8]
  • PHASER [6]
  • XDS [4]
  • PHENIX [3]
  • PHENIX.REFINE [1]
  • SHELXD [1]

Microscope

  • TFS KRIOS [3]
  • FEI TECNAI 20 [2]
  • FEI TECNAI F20 [2]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • FEI FALCON IV 4K X 4K [4]
  • TVIPS TEMCAM-F416 4K X 4K [4]

External links

  • AlphaFold DB [8]
  • PDB [8]
  • UniProt [8]
  • PDBe-Kb [7]
  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
  • InterPro [4]
  • Gene Ontology [3]
  • Complex Portal [1]